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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 22:37:17 UTC
Update Date2021-09-26 23:17:31 UTC
HMDB IDHMDB0259764
Secondary Accession NumbersNone
Metabolite Identification
Common NameVanoxerine
DescriptionVanoxerine, also known as GBR 12909, belongs to the class of organic compounds known as diphenylmethanes. Diphenylmethanes are compounds containing a diphenylmethane moiety, which consists of a methane wherein two hydrogen atoms are replaced by two phenyl groups. Based on a literature review a significant number of articles have been published on Vanoxerine. This compound has been identified in human blood as reported by (PMID: 31557052 ). Vanoxerine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Vanoxerine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
GBR 12909ChEBI
GBR12909ChEBI
VanoxerinaChEBI
VanoxerinumChEBI
VanoxeamineMeSH
1-(2 (Bis(4-fluorophenyl)methoxy)ethyl)-4-(3-phenylpropyl)piperazineMeSH
1-(2 (Bis(4-fluorophenyl)methoxy)ethyl)-4-(3-phenylpropyl)piperazine dihydrochlorideMeSH
Chemical FormulaC28H32F2N2O
Average Molecular Weight450.574
Monoisotopic Molecular Weight450.248269984
IUPAC Name1-{2-[bis(4-fluorophenyl)methoxy]ethyl}-4-(3-phenylpropyl)piperazine
Traditional Namevanoxerine
CAS Registry NumberNot Available
SMILES
FC1=CC=C(C=C1)C(OCCN1CCN(CCCC2=CC=CC=C2)CC1)C1=CC=C(F)C=C1
InChI Identifier
InChI=1S/C28H32F2N2O/c29-26-12-8-24(9-13-26)28(25-10-14-27(30)15-11-25)33-22-21-32-19-17-31(18-20-32)16-4-7-23-5-2-1-3-6-23/h1-3,5-6,8-15,28H,4,7,16-22H2
InChI KeyNAUWTFJOPJWYOT-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as diphenylmethanes. Diphenylmethanes are compounds containing a diphenylmethane moiety, which consists of a methane wherein two hydrogen atoms are replaced by two phenyl groups.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassDiphenylmethanes
Direct ParentDiphenylmethanes
Alternative Parents
Substituents
  • Diphenylmethane
  • Phenylpropylamine
  • Benzylether
  • Fluorobenzene
  • Halobenzene
  • Aralkylamine
  • N-alkylpiperazine
  • Aryl fluoride
  • Aryl halide
  • 1,4-diazinane
  • Piperazine
  • Tertiary amine
  • Tertiary aliphatic amine
  • Azacycle
  • Ether
  • Dialkyl ether
  • Organoheterocyclic compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organofluoride
  • Organohalogen compound
  • Hydrocarbon derivative
  • Organopnictogen compound
  • Organic oxygen compound
  • Amine
  • Organic nitrogen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP4.9ALOGPS
logP6.24ChemAxon
logS-5.5ALOGPS
pKa (Strongest Basic)8.58ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area15.71 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity130.38 m³·mol⁻¹ChemAxon
Polarizability49.93 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+212.58732859911
AllCCS[M+H-H2O]+210.46232859911
AllCCS[M+Na]+215.0932859911
AllCCS[M+NH4]+214.53532859911
AllCCS[M-H]-206.32632859911
AllCCS[M+Na-2H]-206.61732859911
AllCCS[M+HCOO]-207.09932859911
DeepCCS[M+H]+205.99930932474
DeepCCS[M-H]-203.64230932474
DeepCCS[M-2H]-237.53830932474
DeepCCS[M+Na]+212.7530932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
VanoxerineFC1=CC=C(C=C1)C(OCCN1CCN(CCCC2=CC=CC=C2)CC1)C1=CC=C(F)C=C14308.7Standard polar33892256
VanoxerineFC1=CC=C(C=C1)C(OCCN1CCN(CCCC2=CC=CC=C2)CC1)C1=CC=C(F)C=C13204.5Standard non polar33892256
VanoxerineFC1=CC=C(C=C1)C(OCCN1CCN(CCCC2=CC=CC=C2)CC1)C1=CC=C(F)C=C13225.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Vanoxerine GC-MS (Non-derivatized) - 70eV, Positivesplash10-0udi-4194000000-344fe5131f2be13624892021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Vanoxerine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanoxerine 10V, Positive-QTOFsplash10-0udi-0020900000-00bd29950987973f7c3b2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanoxerine 20V, Positive-QTOFsplash10-0uyi-2595500000-3ee1c7bf802c3e64f6ae2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanoxerine 40V, Positive-QTOFsplash10-00kf-9740000000-96acadf78c51cd341f402017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanoxerine 10V, Negative-QTOFsplash10-0002-0030900000-af4306f4d98d60ace9332017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanoxerine 20V, Negative-QTOFsplash10-00kb-0090600000-9374dc3a2108b8d826722017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanoxerine 40V, Negative-QTOFsplash10-014j-6390000000-6837a4e35ab5c6f28f542017-07-26Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB03701
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID3337
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkVanoxerine
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID64089
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]