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Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-12 17:33:20 UTC

Update Date

2022-11-30 19:57:57 UTC

HMDB ID

HMDB0270209

Secondary Accession Numbers

None

Metabolite Identification

Common Name

PG(PGD1/22:4(7Z,10Z,13Z,16Z))

Description

PG(PGD1/22:4(7Z,10Z,13Z,16Z)) is an oxidized phosphatidylglycerol (PG). Oxidized phosphatidylglycerols are glycerophospholipids in which a phosphoglycerol moiety occupies a glycerol substitution site and at least one of the fatty acyl chains has undergone oxidation. As all oxidized lipids, oxidized phosphatidylglycerols belong to a group of biomolecules that have a role as signaling molecules. The biosynthesis of oxidized lipids is mediated by several enzymatic families, including cyclooxygenases (COX), lipoxygenases (LOX) and cytochrome P450s (CYP). Non-enzymatically oxidized lipids are produced by uncontrolled oxidation through free radicals and are considered harmful to human health (PMID: 33329396 ). As is the case with diacylglycerols, phosphatidylglycerols can have many different combinations of fatty acids of varying lengths, saturation and degrees of oxidation attached at the C-1 and C-2 positions. PG(PGD1/22:4(7Z,10Z,13Z,16Z)), in particular, consists of one chain of one Prostaglandin D1 at the C-1 position and one chain of 7Z,10Z,13Z,16Z-docosatetraenoyl at the C-2 position. Phospholipids are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. Similarly to what occurs with phospholipids, the fatty acid distribution at the C-1 and C-2 positions of glycerol within oxidized phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. Oxidized PGs can be synthesized via three different routes. In one route, the oxidized PG is synthetized de novo following the same mechanisms as for PGs but incorporating oxidized acyl chains (PMID: 33329396 ). An alternative is the transacylation of one of the non-oxidized acyl chains with an oxidized acylCoA (PMID: 33329396 ). The third pathway results from the oxidation of the acyl chain while still attached to the PG backbone, mainly through the action of LOX (PMID: 33329396 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309122119332D          

 62 62  0  0  1  0            999 V2000
    4.9196   -4.8095    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5820   -5.3012    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3391   -4.9734    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.0015   -5.4652    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4337   -4.1539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7713   -3.6621    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8659   -2.8426    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    5.0463   -2.7479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6854   -2.9372    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9605   -2.0230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7176   -1.6952    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8122   -0.8756    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1498   -0.3839    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3927   -0.7117    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7303   -0.2200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8249    0.5995    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9732   -0.5478    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3108   -0.0561    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5537   -0.3839    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8913    0.1078    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1342   -0.2200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0396   -1.0396    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2825   -1.3674    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1027   -2.1726    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6484   -2.7913    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7186   -2.2504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0464   -1.4933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8516   -1.3135    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4277   -0.9476    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5055   -0.1263    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2557    0.2170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3336    1.0383    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6612    1.5164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0838    1.3816    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7561    0.9035    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5063    1.2468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1787    0.7687    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9289    1.1120    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5693   -0.5478    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.2317   -1.0396    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1371   -1.8591    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9888   -0.7117    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6513   -1.2035    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4083   -0.8756    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0708   -1.3674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8278   -1.0396    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4903   -1.5313    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2473   -1.2035    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3420   -0.3839    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0991   -0.0561    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1937    0.7635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5312    1.2552    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7742    0.9274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1117    1.4191    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2064    2.2387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9634    2.5665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0581    3.3860    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3956    3.8778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4903    4.6973    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8278    5.1891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9225    6.0086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2600    6.5003    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  7 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 23 22  1  1  0  0  0
 23 24  1  0  0  0  0
 24 25  1  1  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
 23 29  1  0  0  0  0
 29 30  1  6  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  6  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 12 39  1  1  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
 40 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  2  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  2  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  2  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  2  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 60 61  1  0  0  0  0
 61 62  1  0  0  0  0
M  END

HMDB0270209
     RDKit          3D
PG(PGD1/22:4(7Z,10Z,13Z,16Z))
143143  0  0  0  0  0  0  0  0999 V2000
    1.1284    9.8371    2.4147 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1755    9.6555    1.6554 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0956    9.9156    0.1977 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1367    9.7732   -0.6139 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7717    8.3760   -0.5519 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9602    8.4513   -1.4368 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1061    7.6815   -2.4698 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1206    6.6552   -2.8744 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5769    6.8914   -4.2118 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6413    6.0268   -5.1671 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2348    4.7040   -5.0934 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1986    3.7176   -5.4811 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6750    2.7241   -4.8703 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9294    2.2011   -3.5227 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8597    2.8809   -2.6453 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9714    2.3696   -2.1583 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4929    1.0339   -2.3890 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8541    0.9718   -3.0615 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3067   -0.4907   -3.1575 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3871   -1.3588   -3.9370 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9734   -2.7797   -3.8608 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0411   -3.1647   -2.4121 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1291   -3.0047   -1.8190 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9415   -3.6768   -1.7294 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1310   -3.9603   -0.3528 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2494   -2.9262    0.3932 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9044   -3.1469    0.0856 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9171   -2.3027    0.5417 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2760   -1.2991    1.2354 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5095   -2.4970    0.2746 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3072   -1.2623    0.5696 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8540   -0.1701   -0.4000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5765    1.1110   -0.2087 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2771    1.7410    1.1571 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0288    3.0438    1.2423 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5396    2.8057    1.3272 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1117    4.2580    1.2595 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2164    5.1264    0.6890 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5301    4.6032    2.6557 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0029    3.2764    3.1233 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0224    3.0070    3.7075 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8919    2.3369    2.6896 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2392    0.9736    2.9824 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3403   -0.1079    2.2524 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7445   -1.3829    2.9487 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8315   -1.6440    3.9831 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7168   -2.5551    2.0248 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1455   -3.8442    2.6442 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3573   -4.3441    3.7950 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9589   -5.6768    4.2347 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1848   -6.2351    5.4189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7099   -5.3486    0.0420 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3597   -5.5673   -0.2023 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9043   -7.0903    0.2934 P   0  0  0  0  0  5  0  0  0  0  0  0
   -2.4191   -7.4023    1.6942 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4463   -8.2383   -0.8078 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2150   -7.1288    0.3248 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3430   -7.6334   -0.8204 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8572   -7.5827   -0.6343 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4339   -8.1019   -1.7852 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3239   -6.1450   -0.5024 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9197   -5.4061   -1.6268 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3663    8.8748    2.8901 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9876   10.6154    3.1863 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9631   10.1721    1.7456 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5664    8.6240    1.7749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9091   10.4034    1.9960 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9529    9.3230   -0.1864 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4683   10.9845    0.1610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9011   10.0241   -1.6714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9238   10.5127   -0.3020 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9916    7.6900   -0.8261 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0705    8.2258    0.5139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7445    9.2126   -1.1772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9971    7.7711   -3.0934 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2975    6.4717   -2.1839 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7361    5.7069   -2.8337 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0984    7.8916   -4.3420 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1965    6.3288   -6.1372 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0051    4.6119   -5.9745 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7490    4.3824   -4.2183 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8008    3.8951   -6.5306 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1219    2.1542   -5.4658 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0863    2.2574   -2.9658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0815    1.0866   -3.5501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6169    3.8978   -2.2842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6065    3.0129   -1.4863 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6286    0.5373   -1.3942 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7614    0.4075   -2.9174 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7032    1.3142   -4.1055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6234    1.5462   -2.5329 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652309122119332D          

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M  END
> <DATABASE_ID>
HMDB0270209

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCCCC(=O)O[C@H](COC(=O)CCCCCC[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC)COP(O)(=O)OC[C@@H](O)CO

> <INCHI_IDENTIFIER>
InChI=1S/C48H81O13P/c1-3-5-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-28-32-48(55)61-42(39-60-62(56,57)59-37-41(51)36-49)38-58-47(54)31-27-24-23-26-30-43-44(46(53)35-45(43)52)34-33-40(50)29-25-6-4-2/h9-10,12-13,15-16,18-19,33-34,40-45,49-52H,3-8,11,14,17,20-32,35-39H2,1-2H3,(H,56,57)/b10-9-,13-12-,16-15-,19-18-,34-33+/t40-,41-,42+,43+,44+,45-/m0/s1

> <INCHI_KEY>
SYTYAHWZNNZTTN-ASPHRCAVSA-N

> <FORMULA>
C48H81O13P

> <MOLECULAR_WEIGHT>
897.137

> <EXACT_MASS>
896.541479666

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
143

> <JCHEM_AVERAGE_POLARIZABILITY>
103.77864919004733

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2S)-2,3-dihydroxypropoxy][(2R)-2-[(7Z,10Z,13Z,16Z)-docosa-7,10,13,16-tetraenoyloxy]-3-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propoxy]phosphinic acid

> <ALOGPS_LOGP>
6.32

> <JCHEM_LOGP>
9.487385898666668

> <ALOGPS_LOGS>
-6.36

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.533908659939872

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8909148815596284

> <JCHEM_PKA_STRONGEST_BASIC>
-1.5975374826138498

> <JCHEM_POLAR_SURFACE_AREA>
206.34999999999997

> <JCHEM_REFRACTIVITY>
248.61620000000008

> <JCHEM_ROTATABLE_BOND_COUNT>
41

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.91e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2,3-dihydroxypropoxy((2R)-2-[(7Z,10Z,13Z,16Z)-docosa-7,10,13,16-tetraenoyloxy]-3-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propoxy)phosphinic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0270209
     RDKit          3D
PG(PGD1/22:4(7Z,10Z,13Z,16Z))
143143  0  0  0  0  0  0  0  0999 V2000
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M  END

HEADER    PROTEIN                                 12-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-21         0                                  
HETATM    1  O   UNK     0       9.183  -8.978   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      10.420  -9.896   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.833  -9.284   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      13.069 -10.202   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      12.010  -7.754   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      10.773  -6.836   0.000  0.00  0.00           O+0
HETATM    7  P   UNK     0      10.950  -5.306   0.000  0.00  0.00           P+0
HETATM    8  O   UNK     0       9.420  -5.129   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      12.480  -5.483   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      11.126  -3.776   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      12.540  -3.164   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      12.716  -1.635   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.480  -0.717   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      10.066  -1.329   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       8.830  -0.411   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       9.007   1.119   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       7.417  -1.023   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.180  -0.105   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.767  -0.717   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.530   0.201   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.117  -0.411   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.941  -1.941   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.527  -2.552   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.192  -4.055   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       1.210  -5.210   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -1.341  -4.201   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -1.953  -2.788   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -3.456  -2.452   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      -0.798  -1.769   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -0.944  -0.236   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -2.344   0.405   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -2.489   1.938   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -1.234   2.831   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      -3.890   2.579   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -5.145   1.687   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -6.545   2.327   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      -7.800   1.435   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -9.201   2.076   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0      14.129  -1.023   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0      15.366  -1.941   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      15.189  -3.470   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      16.779  -1.329   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      18.016  -2.246   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      19.429  -1.635   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      20.665  -2.552   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      22.079  -1.941   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      23.315  -2.858   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      24.728  -2.246   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      24.905  -0.717   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      26.318  -0.105   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      26.495   1.425   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      25.258   2.343   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      23.845   1.731   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      22.609   2.649   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      22.785   4.179   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      24.198   4.791   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      24.375   6.321   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      23.139   7.238   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      23.315   8.768   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      22.079   9.686   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0      22.255  11.216   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0      21.019  12.134   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   39                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   29                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   23   30                                                  
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37                                                            
CONECT   39   12   40                                                       
CONECT   40   39   41   42                                                  
CONECT   41   40                                                            
CONECT   42   40   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62                                                       
CONECT   62   61                                                            
MASTER        0    0    0    0    0    0    0    0   62    0  124    0
END

COMPND    HMDB0270209
HETATM    1  C1  UNL     1       1.128   9.837   2.415  1.00  0.00           C  
HETATM    2  C2  UNL     1      -0.176   9.656   1.655  1.00  0.00           C  
HETATM    3  C3  UNL     1       0.096   9.916   0.198  1.00  0.00           C  
HETATM    4  C4  UNL     1      -1.137   9.773  -0.614  1.00  0.00           C  
HETATM    5  C5  UNL     1      -1.772   8.376  -0.552  1.00  0.00           C  
HETATM    6  C6  UNL     1      -2.960   8.451  -1.437  1.00  0.00           C  
HETATM    7  C7  UNL     1      -3.106   7.682  -2.470  1.00  0.00           C  
HETATM    8  C8  UNL     1      -2.121   6.655  -2.874  1.00  0.00           C  
HETATM    9  C9  UNL     1      -1.577   6.891  -4.212  1.00  0.00           C  
HETATM   10  C10 UNL     1      -1.641   6.027  -5.167  1.00  0.00           C  
HETATM   11  C11 UNL     1      -2.235   4.704  -5.093  1.00  0.00           C  
HETATM   12  C12 UNL     1      -1.199   3.718  -5.481  1.00  0.00           C  
HETATM   13  C13 UNL     1      -0.675   2.724  -4.870  1.00  0.00           C  
HETATM   14  C14 UNL     1      -0.929   2.201  -3.523  1.00  0.00           C  
HETATM   15  C15 UNL     1      -1.860   2.881  -2.645  1.00  0.00           C  
HETATM   16  C16 UNL     1      -2.971   2.370  -2.158  1.00  0.00           C  
HETATM   17  C17 UNL     1      -3.493   1.034  -2.389  1.00  0.00           C  
HETATM   18  C18 UNL     1      -4.854   0.972  -3.061  1.00  0.00           C  
HETATM   19  C19 UNL     1      -5.307  -0.491  -3.157  1.00  0.00           C  
HETATM   20  C20 UNL     1      -4.387  -1.359  -3.937  1.00  0.00           C  
HETATM   21  C21 UNL     1      -4.973  -2.780  -3.861  1.00  0.00           C  
HETATM   22  C22 UNL     1      -5.041  -3.165  -2.412  1.00  0.00           C  
HETATM   23  O1  UNL     1      -6.129  -3.005  -1.819  1.00  0.00           O  
HETATM   24  O2  UNL     1      -3.941  -3.677  -1.729  1.00  0.00           O  
HETATM   25  C23 UNL     1      -4.131  -3.960  -0.353  1.00  0.00           C  
HETATM   26  C24 UNL     1      -3.249  -2.926   0.393  1.00  0.00           C  
HETATM   27  O3  UNL     1      -1.904  -3.147   0.086  1.00  0.00           O  
HETATM   28  C25 UNL     1      -0.917  -2.303   0.542  1.00  0.00           C  
HETATM   29  O4  UNL     1      -1.276  -1.299   1.235  1.00  0.00           O  
HETATM   30  C26 UNL     1       0.510  -2.497   0.275  1.00  0.00           C  
HETATM   31  C27 UNL     1       1.307  -1.262   0.570  1.00  0.00           C  
HETATM   32  C28 UNL     1       0.854  -0.170  -0.400  1.00  0.00           C  
HETATM   33  C29 UNL     1       1.577   1.111  -0.209  1.00  0.00           C  
HETATM   34  C30 UNL     1       1.277   1.741   1.157  1.00  0.00           C  
HETATM   35  C31 UNL     1       2.029   3.044   1.242  1.00  0.00           C  
HETATM   36  C32 UNL     1       3.540   2.806   1.327  1.00  0.00           C  
HETATM   37  C33 UNL     1       4.112   4.258   1.259  1.00  0.00           C  
HETATM   38  O5  UNL     1       3.216   5.126   0.689  1.00  0.00           O  
HETATM   39  C34 UNL     1       4.530   4.603   2.656  1.00  0.00           C  
HETATM   40  C35 UNL     1       5.003   3.276   3.123  1.00  0.00           C  
HETATM   41  O6  UNL     1       6.022   3.007   3.707  1.00  0.00           O  
HETATM   42  C36 UNL     1       3.892   2.337   2.690  1.00  0.00           C  
HETATM   43  C37 UNL     1       4.239   0.974   2.982  1.00  0.00           C  
HETATM   44  C38 UNL     1       4.340  -0.108   2.252  1.00  0.00           C  
HETATM   45  C39 UNL     1       4.745  -1.383   2.949  1.00  0.00           C  
HETATM   46  O7  UNL     1       3.831  -1.644   3.983  1.00  0.00           O  
HETATM   47  C40 UNL     1       4.717  -2.555   2.025  1.00  0.00           C  
HETATM   48  C41 UNL     1       5.145  -3.844   2.644  1.00  0.00           C  
HETATM   49  C42 UNL     1       4.357  -4.344   3.795  1.00  0.00           C  
HETATM   50  C43 UNL     1       4.959  -5.677   4.235  1.00  0.00           C  
HETATM   51  C44 UNL     1       4.185  -6.235   5.419  1.00  0.00           C  
HETATM   52  C45 UNL     1      -3.710  -5.349   0.042  1.00  0.00           C  
HETATM   53  O8  UNL     1      -2.360  -5.567  -0.202  1.00  0.00           O  
HETATM   54  P1  UNL     1      -1.904  -7.090   0.293  1.00  0.00           P  
HETATM   55  O9  UNL     1      -2.419  -7.402   1.694  1.00  0.00           O  
HETATM   56  O10 UNL     1      -2.446  -8.238  -0.808  1.00  0.00           O  
HETATM   57  O11 UNL     1      -0.215  -7.129   0.325  1.00  0.00           O  
HETATM   58  C46 UNL     1       0.343  -7.633  -0.820  1.00  0.00           C  
HETATM   59  C47 UNL     1       1.857  -7.583  -0.634  1.00  0.00           C  
HETATM   60  O12 UNL     1       2.434  -8.102  -1.785  1.00  0.00           O  
HETATM   61  C48 UNL     1       2.324  -6.145  -0.502  1.00  0.00           C  
HETATM   62  O13 UNL     1       1.920  -5.406  -1.627  1.00  0.00           O  
HETATM   63  H1  UNL     1       1.366   8.875   2.890  1.00  0.00           H  
HETATM   64  H2  UNL     1       0.988  10.615   3.186  1.00  0.00           H  
HETATM   65  H3  UNL     1       1.963  10.172   1.746  1.00  0.00           H  
HETATM   66  H4  UNL     1      -0.566   8.624   1.775  1.00  0.00           H  
HETATM   67  H5  UNL     1      -0.909  10.403   1.996  1.00  0.00           H  
HETATM   68  H6  UNL     1       0.953   9.323  -0.186  1.00  0.00           H  
HETATM   69  H7  UNL     1       0.468  10.985   0.161  1.00  0.00           H  
HETATM   70  H8  UNL     1      -0.901  10.024  -1.671  1.00  0.00           H  
HETATM   71  H9  UNL     1      -1.924  10.513  -0.302  1.00  0.00           H  
HETATM   72  H10 UNL     1      -0.992   7.690  -0.826  1.00  0.00           H  
HETATM   73  H11 UNL     1      -2.070   8.226   0.514  1.00  0.00           H  
HETATM   74  H12 UNL     1      -3.744   9.213  -1.177  1.00  0.00           H  
HETATM   75  H13 UNL     1      -3.997   7.771  -3.093  1.00  0.00           H  
HETATM   76  H14 UNL     1      -1.298   6.472  -2.184  1.00  0.00           H  
HETATM   77  H15 UNL     1      -2.736   5.707  -2.834  1.00  0.00           H  
HETATM   78  H16 UNL     1      -1.098   7.892  -4.342  1.00  0.00           H  
HETATM   79  H17 UNL     1      -1.197   6.329  -6.137  1.00  0.00           H  
HETATM   80  H18 UNL     1      -3.005   4.612  -5.975  1.00  0.00           H  
HETATM   81  H19 UNL     1      -2.749   4.382  -4.218  1.00  0.00           H  
HETATM   82  H20 UNL     1      -0.801   3.895  -6.531  1.00  0.00           H  
HETATM   83  H21 UNL     1       0.122   2.154  -5.466  1.00  0.00           H  
HETATM   84  H22 UNL     1       0.086   2.257  -2.966  1.00  0.00           H  
HETATM   85  H23 UNL     1      -1.081   1.087  -3.550  1.00  0.00           H  
HETATM   86  H24 UNL     1      -1.617   3.898  -2.284  1.00  0.00           H  
HETATM   87  H25 UNL     1      -3.607   3.013  -1.486  1.00  0.00           H  
HETATM   88  H26 UNL     1      -3.629   0.537  -1.394  1.00  0.00           H  
HETATM   89  H27 UNL     1      -2.761   0.407  -2.917  1.00  0.00           H  
HETATM   90  H28 UNL     1      -4.703   1.314  -4.106  1.00  0.00           H  
HETATM   91  H29 UNL     1      -5.623   1.546  -2.533  1.00  0.00           H  
HETATM   92  H30 UNL     1      -6.314  -0.526  -3.617  1.00  0.00           H  
HETATM   93  H31 UNL     1      -5.428  -0.839  -2.103  1.00  0.00           H  
HETATM   94  H32 UNL     1      -3.345  -1.396  -3.576  1.00  0.00           H  
HETATM   95  H33 UNL     1      -4.401  -1.077  -5.004  1.00  0.00           H  
HETATM   96  H34 UNL     1      -5.988  -2.778  -4.280  1.00  0.00           H  
HETATM   97  H35 UNL     1      -4.364  -3.509  -4.424  1.00  0.00           H  
HETATM   98  H36 UNL     1      -5.159  -3.752  -0.069  1.00  0.00           H  
HETATM   99  H37 UNL     1      -3.548  -1.933   0.012  1.00  0.00           H  
HETATM  100  H38 UNL     1      -3.454  -2.953   1.478  1.00  0.00           H  
HETATM  101  H39 UNL     1       0.719  -2.870  -0.760  1.00  0.00           H  
HETATM  102  H40 UNL     1       0.928  -3.303   0.937  1.00  0.00           H  
HETATM  103  H41 UNL     1       2.362  -1.487   0.277  1.00  0.00           H  
HETATM  104  H42 UNL     1       1.285  -0.960   1.610  1.00  0.00           H  
HETATM  105  H43 UNL     1      -0.240   0.004  -0.361  1.00  0.00           H  
HETATM  106  H44 UNL     1       1.063  -0.608  -1.419  1.00  0.00           H  
HETATM  107  H45 UNL     1       1.285   1.821  -0.989  1.00  0.00           H  
HETATM  108  H46 UNL     1       2.684   0.963  -0.345  1.00  0.00           H  
HETATM  109  H47 UNL     1       0.203   1.913   1.212  1.00  0.00           H  
HETATM  110  H48 UNL     1       1.625   1.025   1.946  1.00  0.00           H  
HETATM  111  H49 UNL     1       1.759   3.634   2.135  1.00  0.00           H  
HETATM  112  H50 UNL     1       1.778   3.608   0.319  1.00  0.00           H  
HETATM  113  H51 UNL     1       3.911   2.276   0.484  1.00  0.00           H  
HETATM  114  H52 UNL     1       5.034   4.232   0.616  1.00  0.00           H  
HETATM  115  H53 UNL     1       3.602   5.740   0.016  1.00  0.00           H  
HETATM  116  H54 UNL     1       3.661   4.941   3.265  1.00  0.00           H  
HETATM  117  H55 UNL     1       5.353   5.354   2.680  1.00  0.00           H  
HETATM  118  H56 UNL     1       3.001   2.619   3.358  1.00  0.00           H  
HETATM  119  H57 UNL     1       4.472   0.805   4.087  1.00  0.00           H  
HETATM  120  H58 UNL     1       4.149  -0.096   1.213  1.00  0.00           H  
HETATM  121  H59 UNL     1       5.775  -1.262   3.352  1.00  0.00           H  
HETATM  122  H60 UNL     1       4.093  -1.235   4.831  1.00  0.00           H  
HETATM  123  H61 UNL     1       3.657  -2.709   1.642  1.00  0.00           H  
HETATM  124  H62 UNL     1       5.363  -2.393   1.126  1.00  0.00           H  
HETATM  125  H63 UNL     1       5.125  -4.618   1.823  1.00  0.00           H  
HETATM  126  H64 UNL     1       6.218  -3.773   2.922  1.00  0.00           H  
HETATM  127  H65 UNL     1       4.354  -3.673   4.692  1.00  0.00           H  
HETATM  128  H66 UNL     1       3.303  -4.513   3.517  1.00  0.00           H  
HETATM  129  H67 UNL     1       4.908  -6.417   3.415  1.00  0.00           H  
HETATM  130  H68 UNL     1       5.997  -5.534   4.586  1.00  0.00           H  
HETATM  131  H69 UNL     1       3.187  -6.601   5.121  1.00  0.00           H  
HETATM  132  H70 UNL     1       4.771  -7.057   5.868  1.00  0.00           H  
HETATM  133  H71 UNL     1       4.122  -5.429   6.192  1.00  0.00           H  
HETATM  134  H72 UNL     1      -3.895  -5.522   1.114  1.00  0.00           H  
HETATM  135  H73 UNL     1      -4.307  -6.067  -0.560  1.00  0.00           H  
HETATM  136  H74 UNL     1      -2.553  -7.846  -1.730  1.00  0.00           H  
HETATM  137  H75 UNL     1       0.087  -7.044  -1.728  1.00  0.00           H  
HETATM  138  H76 UNL     1       0.040  -8.692  -0.936  1.00  0.00           H  
HETATM  139  H77 UNL     1       2.184  -8.176   0.227  1.00  0.00           H  
HETATM  140  H78 UNL     1       2.629  -7.396  -2.444  1.00  0.00           H  
HETATM  141  H79 UNL     1       3.430  -6.121  -0.511  1.00  0.00           H  
HETATM  142  H80 UNL     1       1.967  -5.698   0.446  1.00  0.00           H  
HETATM  143  H81 UNL     1       2.530  -4.650  -1.775  1.00  0.00           H  
CONECT    1    2   63   64   65
CONECT    2    3   66   67
CONECT    3    4   68   69
CONECT    4    5   70   71
CONECT    5    6   72   73
CONECT    6    7    7   74
CONECT    7    8   75
CONECT    8    9   76   77
CONECT    9   10   10   78
CONECT   10   11   79
CONECT   11   12   80   81
CONECT   12   13   13   82
CONECT   13   14   83
CONECT   14   15   84   85
CONECT   15   16   16   86
CONECT   16   17   87
CONECT   17   18   88   89
CONECT   18   19   90   91
CONECT   19   20   92   93
CONECT   20   21   94   95
CONECT   21   22   96   97
CONECT   22   23   23   24
CONECT   24   25
CONECT   25   26   52   98
CONECT   26   27   99  100
CONECT   27   28
CONECT   28   29   29   30
CONECT   30   31  101  102
CONECT   31   32  103  104
CONECT   32   33  105  106
CONECT   33   34  107  108
CONECT   34   35  109  110
CONECT   35   36  111  112
CONECT   36   37   42  113
CONECT   37   38   39  114
CONECT   38  115
CONECT   39   40  116  117
CONECT   40   41   41   42
CONECT   42   43  118
CONECT   43   44   44  119
CONECT   44   45  120
CONECT   45   46   47  121
CONECT   46  122
CONECT   47   48  123  124
CONECT   48   49  125  126
CONECT   49   50  127  128
CONECT   50   51  129  130
CONECT   51  131  132  133
CONECT   52   53  134  135
CONECT   53   54
CONECT   54   55   55   56   57
CONECT   56  136
CONECT   57   58
CONECT   58   59  137  138
CONECT   59   60   61  139
CONECT   60  140
CONECT   61   62  141  142
CONECT   62  143
END

HMDB0270209
     RDKit          3D
PG(PGD1/22:4(7Z,10Z,13Z,16Z))
143143  0  0  0  0  0  0  0  0999 V2000
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M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
[(2S)-2,3-Dihydroxypropoxy][(2R)-2-[(7Z)-docosa-7,10,13,16-tetraenoyloxy]-3-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propoxy]phosphinate	Generator

Chemical Formula

C₄₈H₈₁O₁₃P

Average Molecular Weight

897.137

Monoisotopic Molecular Weight

896.541479666

IUPAC Name

[(2S)-2,3-dihydroxypropoxy][(2R)-2-[(7Z,10Z,13Z,16Z)-docosa-7,10,13,16-tetraenoyloxy]-3-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propoxy]phosphinic acid

Traditional Name

(2S)-2,3-dihydroxypropoxy((2R)-2-[(7Z,10Z,13Z,16Z)-docosa-7,10,13,16-tetraenoyloxy]-3-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propoxy)phosphinic acid

CAS Registry Number

Not Available

SMILES

CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCCCC(=O)O[C@H](COC(=O)CCCCCC[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC)COP(O)(=O)OC[C@@H](O)CO

InChI Identifier

InChI=1S/C48H81O13P/c1-3-5-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-28-32-48(55)61-42(39-60-62(56,57)59-37-41(51)36-49)38-58-47(54)31-27-24-23-26-30-43-44(46(53)35-45(43)52)34-33-40(50)29-25-6-4-2/h9-10,12-13,15-16,18-19,33-34,40-45,49-52H,3-8,11,14,17,20-32,35-39H2,1-2H3,(H,56,57)/b10-9-,13-12-,16-15-,19-18-,34-33+/t40-,41-,42+,43+,44+,45-/m0/s1

InChI Key

SYTYAHWZNNZTTN-ASPHRCAVSA-N

Chemical Taxonomy

Classification

Not classified

Ontology

Not Available

Not Available

Not Available

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	6.32	ALOGPS
logP	9.49	ChemAxon
logS	-6.4	ALOGPS
pKa (Strongest Acidic)	1.89	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	206.35 Å²	ChemAxon
Rotatable Bond Count	41	ChemAxon
Refractivity	248.62 m³·mol⁻¹	ChemAxon
Polarizability	103.78 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	301.647	32859911
AllCCS	[M+H-H2O]+	301.827	32859911
AllCCS	[M+Na]+	301.384	32859911
AllCCS	[M+NH4]+	301.447	32859911
AllCCS	[M-H]-	295.174	32859911
AllCCS	[M+Na-2H]-	302.38	32859911
AllCCS	[M+HCOO]-	310.251	32859911
DeepCCS	[M+H]+	303.284	30932474
DeepCCS	[M-H]-	301.389	30932474
DeepCCS	[M-2H]-	334.625	30932474
DeepCCS	[M+Na]+	309.062	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
PG(PGD1/22:4(7Z,10Z,13Z,16Z))	CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCCCC(=O)O[C@H](COC(=O)CCCCCC[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC)COP(O)(=O)OC[C@@H](O)CO	5730.2	Standard polar	33892256
PG(PGD1/22:4(7Z,10Z,13Z,16Z))	CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCCCC(=O)O[C@H](COC(=O)CCCCCC[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC)COP(O)(=O)OC[C@@H](O)CO	4960.3	Standard non polar	33892256
PG(PGD1/22:4(7Z,10Z,13Z,16Z))	CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCCCC(=O)O[C@H](COC(=O)CCCCCC[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC)COP(O)(=O)OC[C@@H](O)CO	6418.8	Semi standard non polar	33892256

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(PGD1/22:4(7Z,10Z,13Z,16Z)) 10V, Negative-QTOF	splash10-0002-0000000090-efa8dfa168760c1a24b9	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(PGD1/22:4(7Z,10Z,13Z,16Z)) 20V, Negative-QTOF	splash10-0uf1-0009130040-17e2931cc0914cb31c87	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(PGD1/22:4(7Z,10Z,13Z,16Z)) 40V, Negative-QTOF	splash10-0uea-0109130040-876660fc1c6bdc00e3ca	2021-09-28	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Hajeyah AA, Griffiths WJ, Wang Y, Finch AJ, O'Donnell VB: The Biosynthesis of Enzymatically Oxidized Lipids. Front Endocrinol (Lausanne). 2020 Nov 19;11:591819. doi: 10.3389/fendo.2020.591819. eCollection 2020. [PubMed:33329396 ]

Showing metabocard for PG(PGD1/22:4(7Z,10Z,13Z,16Z)) (HMDB0270209)

MOL for HMDB0270209 (PG(PGD1/22:4(7Z,10Z,13Z,16Z)))

3D MOL for HMDB0270209 (PG(PGD1/22:4(7Z,10Z,13Z,16Z)))

3D SDF for HMDB0270209 (PG(PGD1/22:4(7Z,10Z,13Z,16Z)))

3D-SDF for HMDB0270209 (PG(PGD1/22:4(7Z,10Z,13Z,16Z)))

PDB for HMDB0270209 (PG(PGD1/22:4(7Z,10Z,13Z,16Z)))

3D PDB for HMDB0270209 (PG(PGD1/22:4(7Z,10Z,13Z,16Z)))

SMILES for HMDB0270209 (PG(PGD1/22:4(7Z,10Z,13Z,16Z)))

INCHI for HMDB0270209 (PG(PGD1/22:4(7Z,10Z,13Z,16Z)))

Structure for HMDB0270209 (PG(PGD1/22:4(7Z,10Z,13Z,16Z)))

3D Structure for HMDB0270209 (PG(PGD1/22:4(7Z,10Z,13Z,16Z)))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

MS/MS Spectra