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Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-12 21:26:22 UTC

Update Date

2022-11-30 19:58:52 UTC

HMDB ID

HMDB0272364

Secondary Accession Numbers

None

Metabolite Identification

Common Name

PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S))

Description

PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)) is an oxidized phosphoglycerophosphate (PGP). Oxidized phosphoglycerophosphates are glycerophospholipids in which a phosphoglycerol moiety occupies a glycerol substitution site and at least one of the fatty acyl chains has undergone oxidation. As all oxidized lipids, oxidized phosphoglycerophosphates belong to a group of biomolecules that have a role as signaling molecules. The biosynthesis of oxidized lipids is mediated by several enzymatic families, including cyclooxygenases (COX), lipoxygenases (LOX) and cytochrome P450s (CYP). Non-enzymatically oxidized lipids are produced by uncontrolled oxidation through free radicals and are considered harmful to human health (PMID: 33329396 ). As is the case with diacylglycerols, phosphoglycerophosphates can have many different combinations of fatty acids of varying lengths, saturation and degrees of oxidation attached at the C-1 and C-2 positions. PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)), in particular, consists of one chain of one hexadecanoyl at the C-1 position and one chain of 5(S),15(S)-Dihydroxyeicosatetraenoyl at the C-2 position. Phospholipids are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. Similarly to what occurs with phospholipids, the fatty acid distribution at the C-1 and C-2 positions of glycerol within oxidized phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. Oxidized PGPs can be synthesized via three different routes. In one route, the oxidized PGP is synthetized de novo following the same mechanisms as for PGPs but incorporating oxidized acyl chains (PMID: 33329396 ). An alternative is the transacylation of one of the non-oxidized acyl chains with an oxidized acylCoA (PMID: 33329396 ). The third pathway results from the oxidation of the acyl chain while still attached to the PGP backbone, mainely through the action of LOX (PMID: 33329396 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S))
  Mrv1652309122123262D          

 61 60  0  0  1  0            999 V2000
   -3.8020    0.3607    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9591    0.3596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2447    0.7720    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6571    1.4866    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1679    0.0575    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4699    1.1846    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1844    0.7720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8989    1.1846    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6134    0.7720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7177    0.3983    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0032    0.8108    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    4.4156    1.5255    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5905    0.0962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2885    1.2234    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3114    1.8990    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4864    1.8990    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0969    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3824    0.3590    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6679    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9699   -0.3554    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7950   -0.3554    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5121    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5121    1.5410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2262    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9403    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6544    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3686    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0827    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7968    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5109    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2250    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9391    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6532    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3673    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0815    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.7956    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.5097    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.2239    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -1.5394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2236   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9377   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6518   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3660   -0.7679    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.3660   -1.5394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0801   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7942   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5083   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3333   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0475   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7616   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5865   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3007   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0148   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.7289   -0.7679    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  -13.7289   -1.5394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -14.4430   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.1571   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.8712   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.5854   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.2995   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1 22  1  0  0  0  0
  2 19  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  2  0  0  0  0
  5  3  1  0  0  0  0
  6  3  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  8 16  1  0  0  0  0
  8 15  1  6  0  0  0
  9  8  1  0  0  0  0
  9 14  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  2  0  0  0  0
 13 11  1  0  0  0  0
 14 11  1  0  0  0  0
 17  1  1  0  0  0  0
 18 17  1  0  0  0  0
 18 20  1  1  0  0  0
 18 21  1  0  0  0  0
 19 18  1  0  0  0  0
 21 39  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 39 40  2  0  0  0  0
 39 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  6  0  0  0
 44 46  1  0  0  0  0
 46 47  2  0  0  0  0
 47 48  1  0  0  0  0
 48 49  2  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  2  0  0  0  0
 52 53  1  0  0  0  0
 53 54  2  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  6  0  0  0
 55 57  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 60 61  1  0  0  0  0
M  END

HMDB0272364
     RDKit          3D
PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S))
135134  0  0  0  0  0  0  0  0999 V2000
    7.7969   -4.2617    7.9949 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5122   -4.8609    7.4965 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3381   -4.1269    8.0840 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3178   -2.6547    7.7519 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2870   -2.4744    6.2691 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2513   -1.0184    5.8609 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2493   -0.8080    4.3981 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1282   -1.3766    3.6170 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7567   -0.8285    4.0123 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7716   -1.4838    3.1220 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3460   -1.0786    3.3003 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1068    0.3911    3.0928 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3695    0.6485    3.2652 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6975    2.1188    3.0702 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2852    2.6236    1.7320 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9437    1.9185    0.6132 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8081    2.5371   -0.0563 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6528    0.6181    0.2734 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3104    0.0089   -0.8197 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8943   -1.4476   -0.9471 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4073   -1.6016   -1.0757 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0058   -0.9147   -2.2003 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6606   -0.9976   -2.4460 P   0  0  0  0  0  5  0  0  0  0  0  0
    2.2227    0.4113   -2.2500 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3372   -1.9839   -1.2406 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0390   -1.5580   -3.9892 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9438   -2.6364   -3.8732 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3111   -3.1472   -5.2577 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9079   -2.1103   -6.0006 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4004   -4.1984   -5.0578 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8660   -4.6631   -6.2805 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0723   -5.7975   -6.0241 P   0  0  0  0  0  5  0  0  0  0  0  0
    6.3529   -6.5953   -7.2919 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5087   -5.0308   -5.5611 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6074   -6.8244   -4.7576 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5109   -1.9876   -2.0897 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5461   -2.9111   -2.0196 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9093   -3.2058   -0.8342 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2222   -3.5506   -3.1311 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6671   -3.2878   -3.3360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0812   -1.9006   -3.6559 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8060   -0.8432   -2.6414 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.4636   -1.1458   -1.4662 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3561    0.4358   -3.2255 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5965    1.5077   -3.3478 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1780    2.6977   -3.9165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4776    3.7926   -4.0634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0506    3.9381   -3.6722 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2840    4.2473   -4.8823 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6124    5.3675   -4.9803 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5438    6.3889   -3.9710 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8266    7.4716   -4.1934 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7343    8.5306   -3.1957 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5474    9.2395   -3.3975 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9628    8.1591   -1.7852 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0513    7.1691   -1.1690 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3951    7.5980   -1.1435 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1657    6.4609   -0.4586 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6381    6.7506   -0.3539 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6299   -4.9365    7.6469 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9488   -3.2915    7.4840 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8044   -4.1894    9.0870 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4431   -4.9166    6.4031 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4157   -5.9254    7.8690 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2738   -4.2908    9.1874 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4184   -4.6296    7.6819 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1708   -2.1374    8.2383 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3805   -2.2384    8.2031 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1612   -2.9994    5.8381 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3904   -2.9812    5.8694 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4114   -0.4760    6.3098 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1841   -0.5596    6.2694 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1924   -1.2770    3.9874 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4050    0.2819    4.2155 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1545   -2.4834    3.6480 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3215   -1.1080    2.5340 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8126    0.2559    3.9472 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5794   -1.0834    5.0748 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8329   -2.5871    3.2868 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0389   -1.3313    2.0462 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0183   -1.3440    4.3071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2856   -1.6265    2.5734 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6270    0.9371    3.9095 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3915    0.7460    2.0921 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9295    0.0802    2.5051 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7285    0.3762    4.2805 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8040    2.2031    3.1445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2282    2.6696    3.8823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1671    2.6388    1.6161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5500    3.7236    1.7179 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3806    0.0457   -0.6367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0369    0.5666   -1.7291 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3232   -1.9448   -0.0351 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0555   -1.0868   -0.1923 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1471   -2.6751   -1.0982 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6975   -1.4504   -0.4917 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5161   -3.4400   -3.2507 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8791   -2.2858   -3.3959 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4593   -3.5221   -5.8290 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3780   -1.9183   -6.8199 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2276   -3.7126   -4.5280 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0166   -5.0264   -4.4322 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5272   -4.0705   -5.8377 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3277   -7.4681   -4.5158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1048   -4.6682   -3.0404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7151   -3.2723   -4.1090 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0128   -3.9928   -4.1553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2132   -3.6796   -2.4133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1901   -1.8660   -3.8667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5606   -1.6409   -4.6323 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7504   -0.6768   -2.4318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4423   -1.2493   -1.5627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3856    0.4369   -3.5383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5950    1.4281   -3.0190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2291    2.7353   -4.2492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9554    4.6755   -4.5035 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0332    4.7723   -2.9309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6456    3.0329   -3.1635 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2628    3.5446   -5.7179 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0516    5.5370   -5.9251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0425    6.3352   -3.0366 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2900    7.5938   -5.1321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5434    9.2803   -3.4621 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0970    8.9654   -4.2211 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8757    9.1129   -1.1805 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0432    7.8838   -1.6731 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3224    6.9496   -0.0996 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0865    6.2091   -1.7070 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8540    7.6858   -2.1516 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5522    8.4909   -0.5054 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7693    6.3226    0.5722 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9700    5.5001   -0.9983 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9959    7.2968   -1.2503 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8730    7.3413    0.5746 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1961    5.7788   -0.2777 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  0
 23 25  1  0
 23 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 31 32  1  0
 32 33  2  0
 32 34  1  0
 32 35  1  0
 20 36  1  0
 36 37  1  0
 37 38  2  0
 37 39  1  0
 39 40  1  0
 40 41  1  0
 41 42  1  0
 42 43  1  0
 42 44  1  0
 44 45  2  0
 45 46  1  0
 46 47  2  0
 47 48  1  0
 48 49  1  0
 49 50  2  0
 50 51  1  0
 51 52  2  0
 52 53  1  0
 53 54  1  0
 53 55  1  0
 55 56  1  0
 56 57  1  0
 57 58  1  0
 58 59  1  0
  1 60  1  0
  1 61  1  0
  1 62  1  0
  2 63  1  0
  2 64  1  0
  3 65  1  0
  3 66  1  0
  4 67  1  0
  4 68  1  0
  5 69  1  0
  5 70  1  0
  6 71  1  0
  6 72  1  0
  7 73  1  0
  7 74  1  0
  8 75  1  0
  8 76  1  0
  9 77  1  0
  9 78  1  0
 10 79  1  0
 10 80  1  0
 11 81  1  0
 11 82  1  0
 12 83  1  0
 12 84  1  0
 13 85  1  0
 13 86  1  0
 14 87  1  0
 14 88  1  0
 15 89  1  0
 15 90  1  0
 19 91  1  0
 19 92  1  0
 20 93  1  1
 21 94  1  0
 21 95  1  0
 25 96  1  0
 27 97  1  0
 27 98  1  0
 28 99  1  6
 29100  1  0
 30101  1  0
 30102  1  0
 34103  1  0
 35104  1  0
 39105  1  0
 39106  1  0
 40107  1  0
 40108  1  0
 41109  1  0
 41110  1  0
 42111  1  1
 43112  1  0
 44113  1  0
 45114  1  0
 46115  1  0
 47116  1  0
 48117  1  0
 48118  1  0
 49119  1  0
 50120  1  0
 51121  1  0
 52122  1  0
 53123  1  6
 54124  1  0
 55125  1  0
 55126  1  0
 56127  1  0
 56128  1  0
 57129  1  0
 57130  1  0
 58131  1  0
 58132  1  0
 59133  1  0
 59134  1  0
 59135  1  0
M  END

PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S))
  Mrv1652309122123262D          

 61 60  0  0  1  0            999 V2000
   -3.8020    0.3607    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9591    0.3596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2447    0.7720    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6571    1.4866    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1679    0.0575    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4699    1.1846    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1844    0.7720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8989    1.1846    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6134    0.7720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7177    0.3983    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0032    0.8108    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    4.4156    1.5255    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5905    0.0962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2885    1.2234    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3114    1.8990    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4864    1.8990    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0969    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3824    0.3590    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6679    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9699   -0.3554    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7950   -0.3554    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5121    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5121    1.5410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2262    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9403    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6544    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3686    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0827    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7968    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5109    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2250    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9391    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6532    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3673    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0815    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.7956    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.5097    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.2239    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -1.5394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2236   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9377   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6518   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3660   -0.7679    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.3660   -1.5394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0801   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7942   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5083   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3333   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0475   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7616   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5865   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3007   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0148   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.7289   -0.7679    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  -13.7289   -1.5394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -14.4430   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.1571   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.8712   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.5854   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.2995   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1 22  1  0  0  0  0
  2 19  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  2  0  0  0  0
  5  3  1  0  0  0  0
  6  3  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  8 16  1  0  0  0  0
  8 15  1  6  0  0  0
  9  8  1  0  0  0  0
  9 14  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  2  0  0  0  0
 13 11  1  0  0  0  0
 14 11  1  0  0  0  0
 17  1  1  0  0  0  0
 18 17  1  0  0  0  0
 18 20  1  1  0  0  0
 18 21  1  0  0  0  0
 19 18  1  0  0  0  0
 21 39  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 39 40  2  0  0  0  0
 39 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  6  0  0  0
 44 46  1  0  0  0  0
 46 47  2  0  0  0  0
 47 48  1  0  0  0  0
 48 49  2  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  2  0  0  0  0
 52 53  1  0  0  0  0
 53 54  2  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  6  0  0  0
 55 57  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 60 61  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0272364

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@](O)(COP(O)(O)=O)COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCCCCCCCCCC)OC(=O)CCC[C@H](O)\C=C\C=C/C\C=C/C=C/[C@H](O)CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C42H76O15P2/c1-3-5-7-8-9-10-11-12-13-14-18-21-25-31-41(46)53-35-40(36-56-59(51,52)55-34-39(45)33-54-58(48,49)50)57-42(47)32-26-30-38(44)29-24-20-17-15-16-19-23-28-37(43)27-22-6-4-2/h16-17,19-20,23-24,28-29,37-40,43-45H,3-15,18,21-22,25-27,30-36H2,1-2H3,(H,51,52)(H2,48,49,50)/b19-16-,20-17-,28-23+,29-24+/t37-,38-,39+,40-/m1/s1

> <INCHI_KEY>
YRIQPLLIAUTSES-YOMLYHDOSA-N

> <FORMULA>
C42H76O15P2

> <MOLECULAR_WEIGHT>
883.003

> <EXACT_MASS>
882.465945743

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
135

> <JCHEM_AVERAGE_POLARIZABILITY>
98.8052554123823

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2S)-3-({[(2R)-2-{[(5S,6E,8Z,11Z,13E,15R)-5,15-dihydroxyicosa-6,8,11,13-tetraenoyl]oxy}-3-(hexadecanoyloxy)propoxy](hydroxy)phosphoryl}oxy)-2-hydroxypropoxy]phosphonic acid

> <ALOGPS_LOGP>
5.87

> <JCHEM_LOGP>
8.682451387333334

> <ALOGPS_LOGS>
-5.99

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-3

> <JCHEM_PKA>
2.040423919389548

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.3557158673251273

> <JCHEM_PKA_STRONGEST_BASIC>
-1.260235274721559

> <JCHEM_POLAR_SURFACE_AREA>
235.80999999999997

> <JCHEM_REFRACTIVITY>
232.08320000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
42

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.06e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-3-{[(2R)-2-{[(5S,6E,8Z,11Z,13E,15R)-5,15-dihydroxyicosa-6,8,11,13-tetraenoyl]oxy}-3-(hexadecanoyloxy)propoxy(hydroxy)phosphoryl]oxy}-2-hydroxypropoxyphosphonic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0272364
     RDKit          3D
PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S))
135134  0  0  0  0  0  0  0  0999 V2000
    7.7969   -4.2617    7.9949 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5122   -4.8609    7.4965 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3381   -4.1269    8.0840 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3178   -2.6547    7.7519 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2870   -2.4744    6.2691 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 12-SEP-21   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S))         
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-21         0                                  
HETATM    1  O   UNK     0      -7.097   0.673   0.000  0.00  0.00           O+0
HETATM    2  O   UNK     0      -1.790   0.671   0.000  0.00  0.00           O+0
HETATM    3  P   UNK     0      -0.457   1.441   0.000  0.00  0.00           P+0
HETATM    4  O   UNK     0      -1.227   2.775   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0       0.313   0.107   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0       0.877   2.211   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       2.211   1.441   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.545   2.211   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.878   1.441   0.000  0.00  0.00           C+0
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HETATM   11  P   UNK     0       7.473   1.513   0.000  0.00  0.00           P+0
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HETATM   28  C   UNK     0     -15.088   0.665   0.000  0.00  0.00           C+0
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HETATM   30  C   UNK     0     -17.754   0.665   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0     -19.087   1.436   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0     -20.420   0.665   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0     -21.753   1.436   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0     -23.086   0.665   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0     -24.419   1.436   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0     -25.752   0.665   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0     -27.085   1.436   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0     -28.418   0.665   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -6.551  -1.433   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -6.551  -2.873   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      -7.884  -0.662   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      -9.217  -1.433   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0     -10.550  -0.662   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0     -11.883  -1.433   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0     -11.883  -2.873   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0     -13.216  -0.662   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0     -14.549  -1.433   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0     -15.882  -0.662   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0     -17.422  -0.662   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0     -18.755  -1.433   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0     -20.088  -0.662   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0     -21.628  -0.662   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0     -22.961  -1.433   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0     -24.294  -0.662   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0     -25.627  -1.433   0.000  0.00  0.00           C+0
HETATM   56  O   UNK     0     -25.627  -2.873   0.000  0.00  0.00           O+0
HETATM   57  C   UNK     0     -26.960  -0.662   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0     -28.293  -1.433   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0     -29.626  -0.662   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0     -30.959  -1.433   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0     -32.292  -0.662   0.000  0.00  0.00           C+0
CONECT    1   22   17                                                       
CONECT    2   19    3                                                       
CONECT    3    2    4    5    6                                             
CONECT    4    3                                                            
CONECT    5    3                                                            
CONECT    6    3    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7   16   15    9                                             
CONECT    9    8   14                                                       
CONECT   10   11                                                            
CONECT   11   10   12   13   14                                             
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    9   11                                                       
CONECT   15    8                                                            
CONECT   16    8                                                            
CONECT   17    1   18                                                       
CONECT   18   17   20   21   19                                             
CONECT   19    2   18                                                       
CONECT   20   18                                                            
CONECT   21   18   39                                                       
CONECT   22    1   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37                                                            
CONECT   39   21   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45   46                                                  
CONECT   45   44                                                            
CONECT   46   44   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56   57                                                  
CONECT   56   55                                                            
CONECT   57   55   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60                                                            
MASTER        0    0    0    0    0    0    0    0   61    0  120    0
END

COMPND    HMDB0272364
HETATM    1  C1  UNL     1       7.797  -4.262   7.995  1.00  0.00           C  
HETATM    2  C2  UNL     1       6.512  -4.861   7.497  1.00  0.00           C  
HETATM    3  C3  UNL     1       5.338  -4.127   8.084  1.00  0.00           C  
HETATM    4  C4  UNL     1       5.318  -2.655   7.752  1.00  0.00           C  
HETATM    5  C5  UNL     1       5.287  -2.474   6.269  1.00  0.00           C  
HETATM    6  C6  UNL     1       5.251  -1.018   5.861  1.00  0.00           C  
HETATM    7  C7  UNL     1       5.249  -0.808   4.398  1.00  0.00           C  
HETATM    8  C8  UNL     1       4.128  -1.377   3.617  1.00  0.00           C  
HETATM    9  C9  UNL     1       2.757  -0.828   4.012  1.00  0.00           C  
HETATM   10  C10 UNL     1       1.772  -1.484   3.122  1.00  0.00           C  
HETATM   11  C11 UNL     1       0.346  -1.079   3.300  1.00  0.00           C  
HETATM   12  C12 UNL     1       0.107   0.391   3.093  1.00  0.00           C  
HETATM   13  C13 UNL     1      -1.370   0.648   3.265  1.00  0.00           C  
HETATM   14  C14 UNL     1      -1.698   2.119   3.070  1.00  0.00           C  
HETATM   15  C15 UNL     1      -1.285   2.624   1.732  1.00  0.00           C  
HETATM   16  C16 UNL     1      -1.944   1.918   0.613  1.00  0.00           C  
HETATM   17  O1  UNL     1      -2.808   2.537  -0.056  1.00  0.00           O  
HETATM   18  O2  UNL     1      -1.653   0.618   0.273  1.00  0.00           O  
HETATM   19  C17 UNL     1      -2.310   0.009  -0.820  1.00  0.00           C  
HETATM   20  C18 UNL     1      -1.894  -1.448  -0.947  1.00  0.00           C  
HETATM   21  C19 UNL     1      -0.407  -1.602  -1.076  1.00  0.00           C  
HETATM   22  O3  UNL     1       0.006  -0.915  -2.200  1.00  0.00           O  
HETATM   23  P1  UNL     1       1.661  -0.998  -2.446  1.00  0.00           P  
HETATM   24  O4  UNL     1       2.223   0.411  -2.250  1.00  0.00           O  
HETATM   25  O5  UNL     1       2.337  -1.984  -1.241  1.00  0.00           O  
HETATM   26  O6  UNL     1       2.039  -1.558  -3.989  1.00  0.00           O  
HETATM   27  C20 UNL     1       2.944  -2.636  -3.873  1.00  0.00           C  
HETATM   28  C21 UNL     1       3.311  -3.147  -5.258  1.00  0.00           C  
HETATM   29  O7  UNL     1       3.908  -2.110  -6.001  1.00  0.00           O  
HETATM   30  C22 UNL     1       4.400  -4.198  -5.058  1.00  0.00           C  
HETATM   31  O8  UNL     1       4.866  -4.663  -6.281  1.00  0.00           O  
HETATM   32  P2  UNL     1       6.072  -5.797  -6.024  1.00  0.00           P  
HETATM   33  O9  UNL     1       6.353  -6.595  -7.292  1.00  0.00           O  
HETATM   34  O10 UNL     1       7.509  -5.031  -5.561  1.00  0.00           O  
HETATM   35  O11 UNL     1       5.607  -6.824  -4.758  1.00  0.00           O  
HETATM   36  O12 UNL     1      -2.511  -1.988  -2.090  1.00  0.00           O  
HETATM   37  C23 UNL     1      -3.546  -2.911  -2.020  1.00  0.00           C  
HETATM   38  O13 UNL     1      -3.909  -3.206  -0.834  1.00  0.00           O  
HETATM   39  C24 UNL     1      -4.222  -3.551  -3.131  1.00  0.00           C  
HETATM   40  C25 UNL     1      -5.667  -3.288  -3.336  1.00  0.00           C  
HETATM   41  C26 UNL     1      -6.081  -1.901  -3.656  1.00  0.00           C  
HETATM   42  C27 UNL     1      -5.806  -0.843  -2.641  1.00  0.00           C  
HETATM   43  O14 UNL     1      -6.464  -1.146  -1.466  1.00  0.00           O  
HETATM   44  C28 UNL     1      -6.356   0.436  -3.226  1.00  0.00           C  
HETATM   45  C29 UNL     1      -5.597   1.508  -3.348  1.00  0.00           C  
HETATM   46  C30 UNL     1      -6.178   2.698  -3.917  1.00  0.00           C  
HETATM   47  C31 UNL     1      -5.478   3.793  -4.063  1.00  0.00           C  
HETATM   48  C32 UNL     1      -4.051   3.938  -3.672  1.00  0.00           C  
HETATM   49  C33 UNL     1      -3.284   4.247  -4.882  1.00  0.00           C  
HETATM   50  C34 UNL     1      -2.612   5.367  -4.980  1.00  0.00           C  
HETATM   51  C35 UNL     1      -2.544   6.389  -3.971  1.00  0.00           C  
HETATM   52  C36 UNL     1      -1.827   7.472  -4.193  1.00  0.00           C  
HETATM   53  C37 UNL     1      -1.734   8.531  -3.196  1.00  0.00           C  
HETATM   54  O15 UNL     1      -0.547   9.240  -3.398  1.00  0.00           O  
HETATM   55  C38 UNL     1      -1.963   8.159  -1.785  1.00  0.00           C  
HETATM   56  C39 UNL     1      -1.051   7.169  -1.169  1.00  0.00           C  
HETATM   57  C40 UNL     1       0.395   7.598  -1.144  1.00  0.00           C  
HETATM   58  C41 UNL     1       1.166   6.461  -0.459  1.00  0.00           C  
HETATM   59  C42 UNL     1       2.638   6.751  -0.354  1.00  0.00           C  
HETATM   60  H1  UNL     1       8.630  -4.936   7.647  1.00  0.00           H  
HETATM   61  H2  UNL     1       7.949  -3.291   7.484  1.00  0.00           H  
HETATM   62  H3  UNL     1       7.804  -4.189   9.087  1.00  0.00           H  
HETATM   63  H4  UNL     1       6.443  -4.917   6.403  1.00  0.00           H  
HETATM   64  H5  UNL     1       6.416  -5.925   7.869  1.00  0.00           H  
HETATM   65  H6  UNL     1       5.274  -4.291   9.187  1.00  0.00           H  
HETATM   66  H7  UNL     1       4.418  -4.630   7.682  1.00  0.00           H  
HETATM   67  H8  UNL     1       6.171  -2.137   8.238  1.00  0.00           H  
HETATM   68  H9  UNL     1       4.380  -2.238   8.203  1.00  0.00           H  
HETATM   69  H10 UNL     1       6.161  -2.999   5.838  1.00  0.00           H  
HETATM   70  H11 UNL     1       4.390  -2.981   5.869  1.00  0.00           H  
HETATM   71  H12 UNL     1       4.411  -0.476   6.310  1.00  0.00           H  
HETATM   72  H13 UNL     1       6.184  -0.560   6.269  1.00  0.00           H  
HETATM   73  H14 UNL     1       6.192  -1.277   3.987  1.00  0.00           H  
HETATM   74  H15 UNL     1       5.405   0.282   4.216  1.00  0.00           H  
HETATM   75  H16 UNL     1       4.154  -2.483   3.648  1.00  0.00           H  
HETATM   76  H17 UNL     1       4.321  -1.108   2.534  1.00  0.00           H  
HETATM   77  H18 UNL     1       2.813   0.256   3.947  1.00  0.00           H  
HETATM   78  H19 UNL     1       2.579  -1.083   5.075  1.00  0.00           H  
HETATM   79  H20 UNL     1       1.833  -2.587   3.287  1.00  0.00           H  
HETATM   80  H21 UNL     1       2.039  -1.331   2.046  1.00  0.00           H  
HETATM   81  H22 UNL     1      -0.018  -1.344   4.307  1.00  0.00           H  
HETATM   82  H23 UNL     1      -0.286  -1.627   2.573  1.00  0.00           H  
HETATM   83  H24 UNL     1       0.627   0.937   3.909  1.00  0.00           H  
HETATM   84  H25 UNL     1       0.392   0.746   2.092  1.00  0.00           H  
HETATM   85  H26 UNL     1      -1.930   0.080   2.505  1.00  0.00           H  
HETATM   86  H27 UNL     1      -1.729   0.376   4.281  1.00  0.00           H  
HETATM   87  H28 UNL     1      -2.804   2.203   3.144  1.00  0.00           H  
HETATM   88  H29 UNL     1      -1.228   2.670   3.882  1.00  0.00           H  
HETATM   89  H30 UNL     1      -0.167   2.639   1.616  1.00  0.00           H  
HETATM   90  H31 UNL     1      -1.550   3.724   1.718  1.00  0.00           H  
HETATM   91  H32 UNL     1      -3.381   0.046  -0.637  1.00  0.00           H  
HETATM   92  H33 UNL     1      -2.037   0.567  -1.729  1.00  0.00           H  
HETATM   93  H34 UNL     1      -2.323  -1.945  -0.035  1.00  0.00           H  
HETATM   94  H35 UNL     1       0.056  -1.087  -0.192  1.00  0.00           H  
HETATM   95  H36 UNL     1      -0.147  -2.675  -1.098  1.00  0.00           H  
HETATM   96  H37 UNL     1       2.697  -1.450  -0.492  1.00  0.00           H  
HETATM   97  H38 UNL     1       2.516  -3.440  -3.251  1.00  0.00           H  
HETATM   98  H39 UNL     1       3.879  -2.286  -3.396  1.00  0.00           H  
HETATM   99  H40 UNL     1       2.459  -3.522  -5.829  1.00  0.00           H  
HETATM  100  H41 UNL     1       3.378  -1.918  -6.820  1.00  0.00           H  
HETATM  101  H42 UNL     1       5.228  -3.713  -4.528  1.00  0.00           H  
HETATM  102  H43 UNL     1       4.017  -5.026  -4.432  1.00  0.00           H  
HETATM  103  H44 UNL     1       7.527  -4.071  -5.838  1.00  0.00           H  
HETATM  104  H45 UNL     1       6.328  -7.468  -4.516  1.00  0.00           H  
HETATM  105  H46 UNL     1      -4.105  -4.668  -3.040  1.00  0.00           H  
HETATM  106  H47 UNL     1      -3.715  -3.272  -4.109  1.00  0.00           H  
HETATM  107  H48 UNL     1      -6.013  -3.993  -4.155  1.00  0.00           H  
HETATM  108  H49 UNL     1      -6.213  -3.680  -2.413  1.00  0.00           H  
HETATM  109  H50 UNL     1      -7.190  -1.866  -3.867  1.00  0.00           H  
HETATM  110  H51 UNL     1      -5.561  -1.641  -4.632  1.00  0.00           H  
HETATM  111  H52 UNL     1      -4.750  -0.677  -2.432  1.00  0.00           H  
HETATM  112  H53 UNL     1      -7.442  -1.249  -1.563  1.00  0.00           H  
HETATM  113  H54 UNL     1      -7.386   0.437  -3.538  1.00  0.00           H  
HETATM  114  H55 UNL     1      -4.595   1.428  -3.019  1.00  0.00           H  
HETATM  115  H56 UNL     1      -7.229   2.735  -4.249  1.00  0.00           H  
HETATM  116  H57 UNL     1      -5.955   4.675  -4.504  1.00  0.00           H  
HETATM  117  H58 UNL     1      -4.033   4.772  -2.931  1.00  0.00           H  
HETATM  118  H59 UNL     1      -3.646   3.033  -3.163  1.00  0.00           H  
HETATM  119  H60 UNL     1      -3.263   3.545  -5.718  1.00  0.00           H  
HETATM  120  H61 UNL     1      -2.052   5.537  -5.925  1.00  0.00           H  
HETATM  121  H62 UNL     1      -3.042   6.335  -3.037  1.00  0.00           H  
HETATM  122  H63 UNL     1      -1.290   7.594  -5.132  1.00  0.00           H  
HETATM  123  H64 UNL     1      -2.543   9.280  -3.462  1.00  0.00           H  
HETATM  124  H65 UNL     1      -0.097   8.965  -4.221  1.00  0.00           H  
HETATM  125  H66 UNL     1      -1.876   9.113  -1.180  1.00  0.00           H  
HETATM  126  H67 UNL     1      -3.043   7.884  -1.673  1.00  0.00           H  
HETATM  127  H68 UNL     1      -1.322   6.950  -0.100  1.00  0.00           H  
HETATM  128  H69 UNL     1      -1.087   6.209  -1.707  1.00  0.00           H  
HETATM  129  H70 UNL     1       0.854   7.686  -2.152  1.00  0.00           H  
HETATM  130  H71 UNL     1       0.552   8.491  -0.505  1.00  0.00           H  
HETATM  131  H72 UNL     1       0.769   6.323   0.572  1.00  0.00           H  
HETATM  132  H73 UNL     1       0.970   5.500  -0.998  1.00  0.00           H  
HETATM  133  H74 UNL     1       2.996   7.297  -1.250  1.00  0.00           H  
HETATM  134  H75 UNL     1       2.873   7.341   0.575  1.00  0.00           H  
HETATM  135  H76 UNL     1       3.196   5.779  -0.278  1.00  0.00           H  
CONECT    1    2   60   61   62
CONECT    2    3   63   64
CONECT    3    4   65   66
CONECT    4    5   67   68
CONECT    5    6   69   70
CONECT    6    7   71   72
CONECT    7    8   73   74
CONECT    8    9   75   76
CONECT    9   10   77   78
CONECT   10   11   79   80
CONECT   11   12   81   82
CONECT   12   13   83   84
CONECT   13   14   85   86
CONECT   14   15   87   88
CONECT   15   16   89   90
CONECT   16   17   17   18
CONECT   18   19
CONECT   19   20   91   92
CONECT   20   21   36   93
CONECT   21   22   94   95
CONECT   22   23
CONECT   23   24   24   25   26
CONECT   25   96
CONECT   26   27
CONECT   27   28   97   98
CONECT   28   29   30   99
CONECT   29  100
CONECT   30   31  101  102
CONECT   31   32
CONECT   32   33   33   34   35
CONECT   34  103
CONECT   35  104
CONECT   36   37
CONECT   37   38   38   39
CONECT   39   40  105  106
CONECT   40   41  107  108
CONECT   41   42  109  110
CONECT   42   43   44  111
CONECT   43  112
CONECT   44   45   45  113
CONECT   45   46  114
CONECT   46   47   47  115
CONECT   47   48  116
CONECT   48   49  117  118
CONECT   49   50   50  119
CONECT   50   51  120
CONECT   51   52   52  121
CONECT   52   53  122
CONECT   53   54   55  123
CONECT   54  124
CONECT   55   56  125  126
CONECT   56   57  127  128
CONECT   57   58  129  130
CONECT   58   59  131  132
CONECT   59  133  134  135
END

HMDB0272364
     RDKit          3D
PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S))
135134  0  0  0  0  0  0  0  0999 V2000
    7.7969   -4.2617    7.9949 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
[(2S)-3-({[(2R)-2-{[(5S,8Z,11Z,13E,15R)-5,15-dihydroxyicosa-6,8,11,13-tetraenoyl]oxy}-3-(hexadecanoyloxy)propoxy](hydroxy)phosphoryl}oxy)-2-hydroxypropoxy]phosphonate	Generator

Chemical Formula

C₄₂H₇₆O₁₅P₂

Average Molecular Weight

883.003

Monoisotopic Molecular Weight

882.465945743

IUPAC Name

[(2S)-3-({[(2R)-2-{[(5S,6E,8Z,11Z,13E,15R)-5,15-dihydroxyicosa-6,8,11,13-tetraenoyl]oxy}-3-(hexadecanoyloxy)propoxy](hydroxy)phosphoryl}oxy)-2-hydroxypropoxy]phosphonic acid

Traditional Name

(2S)-3-{[(2R)-2-{[(5S,6E,8Z,11Z,13E,15R)-5,15-dihydroxyicosa-6,8,11,13-tetraenoyl]oxy}-3-(hexadecanoyloxy)propoxy(hydroxy)phosphoryl]oxy}-2-hydroxypropoxyphosphonic acid

CAS Registry Number

Not Available

SMILES

[H][C@](O)(COP(O)(O)=O)COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCCCCCCCCCC)OC(=O)CCC[C@H](O)\C=C\C=C/C\C=C/C=C/[C@H](O)CCCCC

InChI Identifier

InChI=1S/C42H76O15P2/c1-3-5-7-8-9-10-11-12-13-14-18-21-25-31-41(46)53-35-40(36-56-59(51,52)55-34-39(45)33-54-58(48,49)50)57-42(47)32-26-30-38(44)29-24-20-17-15-16-19-23-28-37(43)27-22-6-4-2/h16-17,19-20,23-24,28-29,37-40,43-45H,3-15,18,21-22,25-27,30-36H2,1-2H3,(H,51,52)(H2,48,49,50)/b19-16-,20-17-,28-23+,29-24+/t37-,38-,39+,40-/m1/s1

InChI Key

YRIQPLLIAUTSES-YOMLYHDOSA-N

Chemical Taxonomy

Classification

Not classified

Ontology

Not Available

Not Available

Not Available

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	5.87	ALOGPS
logP	8.68	ChemAxon
logS	-6	ALOGPS
pKa (Strongest Acidic)	1.36	ChemAxon
pKa (Strongest Basic)	-1.3	ChemAxon
Physiological Charge	-3	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	235.81 Å²	ChemAxon
Rotatable Bond Count	42	ChemAxon
Refractivity	232.08 m³·mol⁻¹	ChemAxon
Polarizability	98.81 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	298.776	32859911
AllCCS	[M+H-H2O]+	298.882	32859911
AllCCS	[M+Na]+	298.597	32859911
AllCCS	[M+NH4]+	298.642	32859911
AllCCS	[M-H]-	300.676	32859911
AllCCS	[M+Na-2H]-	307.377	32859911
AllCCS	[M+HCOO]-	314.725	32859911
DeepCCS	[M+H]+	275.724	30932474
DeepCCS	[M-H]-	273.329	30932474
DeepCCS	[M-2H]-	306.743	30932474
DeepCCS	[M+Na]+	281.829	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S))	[H][C@](O)(COP(O)(O)=O)COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCCCCCCCCCC)OC(=O)CCC[C@H](O)\C=C\C=C/C\C=C/C=C/[C@H](O)CCCCC	6192.9	Standard polar	33892256
PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S))	[H][C@](O)(COP(O)(O)=O)COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCCCCCCCCCC)OC(=O)CCC[C@H](O)\C=C\C=C/C\C=C/C=C/[C@H](O)CCCCC	4864.9	Standard non polar	33892256
PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S))	[H][C@](O)(COP(O)(O)=O)COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCCCCCCCCCC)OC(=O)CCC[C@H](O)\C=C\C=C/C\C=C/C=C/[C@H](O)CCCCC	6342.1	Semi standard non polar	33892256

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)) 10V, Positive-QTOF	splash10-014j-0000002490-90f773694def6a86b3d0	2021-10-18	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)) 20V, Positive-QTOF	splash10-014i-1100002910-8d3cd1b66cb7f034435b	2021-10-18	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)) 40V, Positive-QTOF	splash10-0uxs-6396316100-4460890e833458efe46a	2021-10-18	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)) 10V, Negative-QTOF	splash10-001i-0010000090-619a674b8e50b7714c1c	2021-10-18	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)) 20V, Negative-QTOF	splash10-0r0s-3092037050-87f21a7fe710342730f1	2021-10-18	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)) 40V, Negative-QTOF	splash10-0kds-4095023100-6943ea558db8ecdbc16c	2021-10-18	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Hajeyah AA, Griffiths WJ, Wang Y, Finch AJ, O'Donnell VB: The Biosynthesis of Enzymatically Oxidized Lipids. Front Endocrinol (Lausanne). 2020 Nov 19;11:591819. doi: 10.3389/fendo.2020.591819. eCollection 2020. [PubMed:33329396 ]

Showing metabocard for PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)) (HMDB0272364)

MOL for HMDB0272364 (PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)))

3D MOL for HMDB0272364 (PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)))

3D SDF for HMDB0272364 (PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)))

3D-SDF for HMDB0272364 (PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)))

PDB for HMDB0272364 (PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)))

3D PDB for HMDB0272364 (PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)))

SMILES for HMDB0272364 (PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)))

INCHI for HMDB0272364 (PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)))

Structure for HMDB0272364 (PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)))

3D Structure for HMDB0272364 (PGP(16:0/20:4(6E,8Z,11Z,13E)-2OH(5S,15S)))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

MS/MS Spectra