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Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-12 22:09:50 UTC

Update Date

2022-11-30 19:59:04 UTC

HMDB ID

HMDB0272753

Secondary Accession Numbers

None

Metabolite Identification

Common Name

PGP(5-iso PGF2VI/18:1(9Z))

Description

PGP(5-iso PGF2VI/18:1(9Z)) is an oxidized phosphoglycerophosphate (PGP). Oxidized phosphoglycerophosphates are glycerophospholipids in which a phosphoglycerol moiety occupies a glycerol substitution site and at least one of the fatty acyl chains has undergone oxidation. As all oxidized lipids, oxidized phosphoglycerophosphates belong to a group of biomolecules that have a role as signaling molecules. The biosynthesis of oxidized lipids is mediated by several enzymatic families, including cyclooxygenases (COX), lipoxygenases (LOX) and cytochrome P450s (CYP). Non-enzymatically oxidized lipids are produced by uncontrolled oxidation through free radicals and are considered harmful to human health (PMID: 33329396 ). As is the case with diacylglycerols, phosphoglycerophosphates can have many different combinations of fatty acids of varying lengths, saturation and degrees of oxidation attached at the C-1 and C-2 positions. PGP(5-iso PGF2VI/18:1(9Z)), in particular, consists of one chain of one 5-iso Prostaglandin F2alpha-VI at the C-1 position and one chain of 9Z-octadecenoyl at the C-2 position. Phospholipids are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. Similarly to what occurs with phospholipids, the fatty acid distribution at the C-1 and C-2 positions of glycerol within oxidized phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. Oxidized PGPs can be synthesized via three different routes. In one route, the oxidized PGP is synthetized de novo following the same mechanisms as for PGPs but incorporating oxidized acyl chains (PMID: 33329396 ). An alternative is the transacylation of one of the non-oxidized acyl chains with an oxidized acylCoA (PMID: 33329396 ). The third pathway results from the oxidation of the acyl chain while still attached to the PGP backbone, mainely through the action of LOX (PMID: 33329396 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309132100102D          

 60 60  0  0  1  0            999 V2000
    4.6623   -5.8684    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6623   -6.6934    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3767   -7.1059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3767   -7.9309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6623   -8.3434    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    4.2498   -7.6290    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0748   -9.0579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9478   -8.7559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9478   -7.1059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2333   -6.6934    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2333   -5.8684    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    2.4083   -5.8684    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0583   -5.8684    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2333   -5.0434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9478   -4.6309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9478   -3.8059    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2333   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5188   -3.8059    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8044   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8044   -2.5684    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0899   -3.8059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3754   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3390   -3.8059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3390   -4.6309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0535   -5.0434    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1397   -5.8639    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5266   -6.4159    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9467   -6.0354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3592   -5.3210    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1797   -5.2347    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8072   -4.7079    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9787   -3.9009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3656   -3.3489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5371   -2.5419    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3218   -2.2870    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9240   -1.9899    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0956   -1.1829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4825   -0.6309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6540    0.1761    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0409    0.7282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6623   -3.3934    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3767   -3.8059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3767   -4.6309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0912   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8057   -3.8059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5201   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2346   -3.8059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9491   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6636   -3.8059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3780   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0925   -3.8059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8070   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8070   -2.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5214   -2.1559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2359   -2.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9504   -2.1559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6649   -2.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3793   -2.1559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0938   -2.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8083   -2.1559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  5  8  2  0  0  0  0
  2  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  2  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 25 24  1  6  0  0  0
 25 26  1  0  0  0  0
 26 27  1  1  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  1  0  0  0
 29 31  1  0  0  0  0
 25 31  1  0  0  0  0
 31 32  1  6  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  6  0  0  0
 34 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 16 41  1  1  0  0  0
 41 42  1  0  0  0  0
 42 43  2  0  0  0  0
 42 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  2  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
M  END

HMDB0272753
     RDKit          3D
PGP(5-iso PGF2VI/18:1(9Z))
136136  0  0  0  0  0  0  0  0999 V2000
   -3.4352   -3.8570    0.0163 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1517   -2.3863    0.0777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7737   -2.0229    1.4985 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4783   -0.5147    1.5741 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1218   -0.1592    2.9805 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8178    1.3282    3.1027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0362    2.0515    2.6252 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9477    3.5792    2.7980 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8119    3.7974    4.2461 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8862    4.4423    4.8873 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7492    5.1102    4.2343 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5435    4.5250    4.7729 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7370    5.3518    4.2638 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9572    4.7798    4.8683 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4673    3.4589    4.4549 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0899    3.4223    3.1239 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4421    3.6776    1.8604 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4026    2.6919    1.4277 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0862    1.7170    2.1464 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7744    2.8366    0.2017 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8353    1.9833   -0.3740 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3634    1.4696   -1.6922 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6380    0.8795   -1.3665 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3466    0.2755   -2.3900 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8337    0.2515   -3.5295 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7000   -0.3255   -2.1253 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1209   -0.0052   -0.7668 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4460   -0.8615    0.1432 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4446   -2.3336   -0.0589 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5380   -2.9599    0.9232 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.4618   -4.4750    0.8244 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.6515   -4.9967    1.3132 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2762   -4.7769    1.7252 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5279   -3.4739    1.9186 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9172   -2.8786    3.1436 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0725   -2.5790    0.8312 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4851   -2.9055   -0.4624 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4606   -3.7277   -0.5778 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8713   -4.0464   -1.9439 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2136   -3.1438   -2.0378 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3151   -5.4283   -1.8769 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3149   -5.9434   -3.1242 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4988   -5.1437   -3.6129 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0267   -5.8258   -4.8646 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4611   -7.2349   -4.5814 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5185    2.6283   -0.6343 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2727    1.7875   -1.3877 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8220    2.1711   -1.7475 P   0  0  0  0  0  5  0  0  0  0  0  0
   -3.0529    3.6628   -1.4898 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0261    1.3413   -0.9654 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1079    1.9834   -3.4380 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6164    0.7105   -3.7808 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8415    0.4309   -5.2390 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3153   -0.8541   -5.5185 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3343    0.2945   -5.5496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8988    1.5244   -5.3023 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5474    1.6124   -5.5585 P   0  0  0  0  0  5  0  0  0  0  0  0
   -6.9599    3.0773   -5.5456 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0494    0.8678   -6.9853 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3064    0.8048   -4.2652 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4717   -4.3905   -0.0452 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0127   -4.2063    0.9033 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0004   -4.0517   -0.9231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2901   -2.1633   -0.5654 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0283   -1.7759   -0.2344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6268   -2.2281    2.1834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8932   -2.5789    1.8137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7273   -0.2521    0.8207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4411    0.0141    1.3051 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2687   -0.7650    3.3576 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9684   -0.3798    3.6701 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5061    1.5826    4.1255 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9659    1.5463    2.3922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9052    1.6321    3.1302 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0596    1.9138    1.5081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8609    4.0519    2.3721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1149    3.8996    2.1836 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6101    3.3514    4.8963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9196    4.5160    6.0126 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7149    6.2063    4.4736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8189    5.0517    3.1522 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5373    4.6509    5.8715 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6633    3.4524    4.5323 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6892    5.4697    3.1857 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6228    6.4120    4.6729 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8471    5.5021    4.7340 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7851    4.7951    5.9996 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2422    3.1615    5.2325 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6884    2.6492    4.5266 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6515    2.4113    2.9934 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0129    4.1359    3.1516 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2537    3.5349    1.0510 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0885    4.6965    1.6256 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7138    1.1277    0.3454 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5064    2.3011   -2.3883 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7047    0.6688   -2.1127 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3813    0.2655   -2.8149 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7726   -1.3485   -2.4501 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1597    1.0757   -0.5106 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7426   -0.4483    1.1399 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3236   -2.6593   -1.0883 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5000   -2.6759    0.2387 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8361   -2.7263    1.9591 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3313   -4.8022   -0.2115 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7419   -5.9530    1.0091 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6867   -5.0945    2.6899 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6469   -5.5295    1.2354 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4715   -3.6563    1.9309 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3132   -3.2542    3.8332 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9025   -1.5128    1.0462 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8705   -2.4764   -1.4062 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9626   -4.2247    0.2276 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5794   -3.8789   -2.7532 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0008   -2.4088   -2.6493 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0933   -6.1855   -1.5628 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4712   -5.5244   -1.0709 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7157   -6.9778   -2.9193 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4648   -6.0334   -3.9201 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2430   -4.0899   -3.8314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3001   -5.1874   -2.8579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2287   -5.8308   -5.6073 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8807   -5.2415   -5.2860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8800   -7.2941   -3.5405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3003   -7.4718   -5.2771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6233   -7.9455   -4.7260 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.7499   -0.0779   -7.0006 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2190    0.5254   -4.5925 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
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  6  7  1  0
  7  8  1  0
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  9 10  2  0
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 13 14  1  0
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 30103  1  1
 31104  1  6
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 53131  1  6
 54132  1  0
 55133  1  0
 55134  1  0
 59135  1  0
 60136  1  0
M  END


  Mrv1652309132100102D          

 60 60  0  0  1  0            999 V2000
    4.6623   -5.8684    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6623   -6.6934    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3767   -7.1059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3767   -7.9309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6623   -8.3434    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    4.2498   -7.6290    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0748   -9.0579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9478   -8.7559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9478   -7.1059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2333   -6.6934    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2333   -5.8684    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    2.4083   -5.8684    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.2333   -5.0434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.2333   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.3390   -3.8059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3390   -4.6309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.1397   -5.8639    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -2.3592   -5.3210    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1797   -5.2347    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8072   -4.7079    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9787   -3.9009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3656   -3.3489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5371   -2.5419    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3218   -2.2870    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9240   -1.9899    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0956   -1.1829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4825   -0.6309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6540    0.1761    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0409    0.7282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6623   -3.3934    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3767   -3.8059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3767   -4.6309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0912   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8057   -3.8059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5201   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2346   -3.8059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9491   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6636   -3.8059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3780   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0925   -3.8059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8070   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8070   -2.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5214   -2.1559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2359   -2.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9504   -2.1559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6649   -2.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3793   -2.1559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0938   -2.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8083   -2.1559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  5  8  2  0  0  0  0
  2  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  2  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 25 24  1  6  0  0  0
 25 26  1  0  0  0  0
 26 27  1  1  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  1  0  0  0
 29 31  1  0  0  0  0
 25 31  1  0  0  0  0
 31 32  1  6  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  6  0  0  0
 34 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 16 41  1  1  0  0  0
 41 42  1  0  0  0  0
 42 43  2  0  0  0  0
 42 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  2  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0272753

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCC\C=C/CCCCCCCC(=O)O[C@H](COC(=O)C\C=C/C[C@@H]1[C@@H](O)C[C@@H](O)[C@@H]1\C=C\[C@H](O)CCCCC)COP(O)(=O)OC[C@@H](O)COP(O)(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C42H76O16P2/c1-3-5-7-8-9-10-11-12-13-14-15-16-17-18-20-26-42(48)58-36(33-57-60(52,53)56-31-35(44)30-55-59(49,50)51)32-54-41(47)25-22-21-24-37-38(40(46)29-39(37)45)28-27-34(43)23-19-6-4-2/h12-13,21-22,27-28,34-40,43-46H,3-11,14-20,23-26,29-33H2,1-2H3,(H,52,53)(H2,49,50,51)/b13-12-,22-21-,28-27+/t34-,35+,36-,37+,38-,39+,40-/m1/s1

> <INCHI_KEY>
WOGWYPOMTPWCTH-MKALCFMMSA-N

> <FORMULA>
C42H76O16P2

> <MOLECULAR_WEIGHT>
899.002

> <EXACT_MASS>
898.460860363

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
136

> <JCHEM_AVERAGE_POLARIZABILITY>
95.8522194059675

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2S)-3-({[(2R)-3-{[(3Z)-5-[(1S,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3R)-3-hydroxyoct-1-en-1-yl]cyclopentyl]pent-3-enoyl]oxy}-2-[(9Z)-octadec-9-enoyloxy]propoxy](hydroxy)phosphoryl}oxy)-2-hydroxypropoxy]phosphonic acid

> <ALOGPS_LOGP>
4.63

> <JCHEM_LOGP>
6.806035471

> <ALOGPS_LOGS>
-5.63

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-3

> <JCHEM_PKA>
2.0402997274873993

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.3552389846073503

> <JCHEM_PKA_STRONGEST_BASIC>
-1.626766501052889

> <JCHEM_POLAR_SURFACE_AREA>
256.03999999999996

> <JCHEM_REFRACTIVITY>
230.6855000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
39

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.10e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-3-{[(2R)-3-{[(3Z)-5-[(1S,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3R)-3-hydroxyoct-1-en-1-yl]cyclopentyl]pent-3-enoyl]oxy}-2-[(9Z)-octadec-9-enoyloxy]propoxy(hydroxy)phosphoryl]oxy}-2-hydroxypropoxyphosphonic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0272753
     RDKit          3D
PGP(5-iso PGF2VI/18:1(9Z))
136136  0  0  0  0  0  0  0  0999 V2000
   -3.4352   -3.8570    0.0163 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1517   -2.3863    0.0777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7737   -2.0229    1.4985 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4783   -0.5147    1.5741 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1218   -0.1592    2.9805 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8178    1.3282    3.1027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0362    2.0515    2.6252 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9477    3.5792    2.7980 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8119    3.7974    4.2461 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 13-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   13-SEP-21         0                                  
HETATM    1  O   UNK     0       8.703 -10.954   0.000  0.00  0.00           O+0
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HETATM   35  O   UNK     0      -4.334  -4.269   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      -1.725  -3.714   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      -2.045  -2.208   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -0.901  -1.178   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -1.221   0.329   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      -0.076   1.359   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0       8.703  -6.334   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      10.037  -7.104   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      10.037  -8.644   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0      11.370  -6.334   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      12.704  -7.104   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      14.038  -6.334   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      15.371  -7.104   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      16.705  -6.334   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      18.039  -7.104   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      19.372  -6.334   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      20.706  -7.104   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      22.040  -6.334   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      22.040  -4.794   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      23.373  -4.024   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      24.707  -4.794   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      26.041  -4.024   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      27.374  -4.794   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      28.708  -4.024   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      30.042  -4.794   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      31.375  -4.024   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    9                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7    8                                             
CONECT    6    5                                                            
CONECT    7    5                                                            
CONECT    8    5                                                            
CONECT    9    2   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13   14                                             
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14   11   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   41                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   31                                                  
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   25   32                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39                                                            
CONECT   41   16   42                                                       
CONECT   42   41   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59                                                            
MASTER        0    0    0    0    0    0    0    0   60    0  120    0
END

COMPND    HMDB0272753
HETATM    1  C1  UNL     1      -3.435  -3.857   0.016  1.00  0.00           C  
HETATM    2  C2  UNL     1      -3.152  -2.386   0.078  1.00  0.00           C  
HETATM    3  C3  UNL     1      -2.774  -2.023   1.498  1.00  0.00           C  
HETATM    4  C4  UNL     1      -2.478  -0.515   1.574  1.00  0.00           C  
HETATM    5  C5  UNL     1      -2.122  -0.159   2.981  1.00  0.00           C  
HETATM    6  C6  UNL     1      -1.818   1.328   3.103  1.00  0.00           C  
HETATM    7  C7  UNL     1      -3.036   2.051   2.625  1.00  0.00           C  
HETATM    8  C8  UNL     1      -2.948   3.579   2.798  1.00  0.00           C  
HETATM    9  C9  UNL     1      -2.812   3.797   4.246  1.00  0.00           C  
HETATM   10  C10 UNL     1      -1.886   4.442   4.887  1.00  0.00           C  
HETATM   11  C11 UNL     1      -0.749   5.110   4.234  1.00  0.00           C  
HETATM   12  C12 UNL     1       0.544   4.525   4.773  1.00  0.00           C  
HETATM   13  C13 UNL     1       1.737   5.352   4.264  1.00  0.00           C  
HETATM   14  C14 UNL     1       2.957   4.780   4.868  1.00  0.00           C  
HETATM   15  C15 UNL     1       3.467   3.459   4.455  1.00  0.00           C  
HETATM   16  C16 UNL     1       4.090   3.422   3.124  1.00  0.00           C  
HETATM   17  C17 UNL     1       3.442   3.678   1.860  1.00  0.00           C  
HETATM   18  C18 UNL     1       2.403   2.692   1.428  1.00  0.00           C  
HETATM   19  O1  UNL     1       2.086   1.717   2.146  1.00  0.00           O  
HETATM   20  O2  UNL     1       1.774   2.837   0.202  1.00  0.00           O  
HETATM   21  C19 UNL     1       0.835   1.983  -0.374  1.00  0.00           C  
HETATM   22  C20 UNL     1       1.363   1.470  -1.692  1.00  0.00           C  
HETATM   23  O3  UNL     1       2.638   0.879  -1.367  1.00  0.00           O  
HETATM   24  C21 UNL     1       3.347   0.275  -2.390  1.00  0.00           C  
HETATM   25  O4  UNL     1       2.834   0.251  -3.529  1.00  0.00           O  
HETATM   26  C22 UNL     1       4.700  -0.325  -2.125  1.00  0.00           C  
HETATM   27  C23 UNL     1       5.121  -0.005  -0.767  1.00  0.00           C  
HETATM   28  C24 UNL     1       5.446  -0.861   0.143  1.00  0.00           C  
HETATM   29  C25 UNL     1       5.445  -2.334  -0.059  1.00  0.00           C  
HETATM   30  C26 UNL     1       4.538  -2.960   0.923  1.00  0.00           C  
HETATM   31  C27 UNL     1       4.462  -4.475   0.824  1.00  0.00           C  
HETATM   32  O5  UNL     1       5.651  -4.997   1.313  1.00  0.00           O  
HETATM   33  C28 UNL     1       3.276  -4.777   1.725  1.00  0.00           C  
HETATM   34  C29 UNL     1       2.528  -3.474   1.919  1.00  0.00           C  
HETATM   35  O6  UNL     1       2.917  -2.879   3.144  1.00  0.00           O  
HETATM   36  C30 UNL     1       3.072  -2.579   0.831  1.00  0.00           C  
HETATM   37  C31 UNL     1       2.485  -2.906  -0.462  1.00  0.00           C  
HETATM   38  C32 UNL     1       1.461  -3.728  -0.578  1.00  0.00           C  
HETATM   39  C33 UNL     1       0.871  -4.046  -1.944  1.00  0.00           C  
HETATM   40  O7  UNL     1      -0.214  -3.144  -2.038  1.00  0.00           O  
HETATM   41  C34 UNL     1       0.315  -5.428  -1.877  1.00  0.00           C  
HETATM   42  C35 UNL     1      -0.315  -5.943  -3.124  1.00  0.00           C  
HETATM   43  C36 UNL     1      -1.499  -5.144  -3.613  1.00  0.00           C  
HETATM   44  C37 UNL     1      -2.027  -5.826  -4.865  1.00  0.00           C  
HETATM   45  C38 UNL     1      -2.461  -7.235  -4.581  1.00  0.00           C  
HETATM   46  C39 UNL     1      -0.518   2.628  -0.634  1.00  0.00           C  
HETATM   47  O8  UNL     1      -1.273   1.788  -1.388  1.00  0.00           O  
HETATM   48  P1  UNL     1      -2.822   2.171  -1.747  1.00  0.00           P  
HETATM   49  O9  UNL     1      -3.053   3.663  -1.490  1.00  0.00           O  
HETATM   50  O10 UNL     1      -4.026   1.341  -0.965  1.00  0.00           O  
HETATM   51  O11 UNL     1      -3.108   1.983  -3.438  1.00  0.00           O  
HETATM   52  C40 UNL     1      -2.616   0.710  -3.781  1.00  0.00           C  
HETATM   53  C41 UNL     1      -2.841   0.431  -5.239  1.00  0.00           C  
HETATM   54  O12 UNL     1      -2.315  -0.854  -5.518  1.00  0.00           O  
HETATM   55  C42 UNL     1      -4.334   0.294  -5.550  1.00  0.00           C  
HETATM   56  O13 UNL     1      -4.899   1.524  -5.302  1.00  0.00           O  
HETATM   57  P2  UNL     1      -6.547   1.612  -5.559  1.00  0.00           P  
HETATM   58  O14 UNL     1      -6.960   3.077  -5.546  1.00  0.00           O  
HETATM   59  O15 UNL     1      -7.049   0.868  -6.985  1.00  0.00           O  
HETATM   60  O16 UNL     1      -7.306   0.805  -4.265  1.00  0.00           O  
HETATM   61  H1  UNL     1      -2.472  -4.391  -0.045  1.00  0.00           H  
HETATM   62  H2  UNL     1      -4.013  -4.206   0.903  1.00  0.00           H  
HETATM   63  H3  UNL     1      -4.000  -4.052  -0.923  1.00  0.00           H  
HETATM   64  H4  UNL     1      -2.290  -2.163  -0.565  1.00  0.00           H  
HETATM   65  H5  UNL     1      -4.028  -1.776  -0.234  1.00  0.00           H  
HETATM   66  H6  UNL     1      -3.627  -2.228   2.183  1.00  0.00           H  
HETATM   67  H7  UNL     1      -1.893  -2.579   1.814  1.00  0.00           H  
HETATM   68  H8  UNL     1      -1.727  -0.252   0.821  1.00  0.00           H  
HETATM   69  H9  UNL     1      -3.441   0.014   1.305  1.00  0.00           H  
HETATM   70  H10 UNL     1      -1.269  -0.765   3.358  1.00  0.00           H  
HETATM   71  H11 UNL     1      -2.968  -0.380   3.670  1.00  0.00           H  
HETATM   72  H12 UNL     1      -1.506   1.583   4.125  1.00  0.00           H  
HETATM   73  H13 UNL     1      -0.966   1.546   2.392  1.00  0.00           H  
HETATM   74  H14 UNL     1      -3.905   1.632   3.130  1.00  0.00           H  
HETATM   75  H15 UNL     1      -3.060   1.914   1.508  1.00  0.00           H  
HETATM   76  H16 UNL     1      -3.861   4.052   2.372  1.00  0.00           H  
HETATM   77  H17 UNL     1      -2.115   3.900   2.184  1.00  0.00           H  
HETATM   78  H18 UNL     1      -3.610   3.351   4.896  1.00  0.00           H  
HETATM   79  H19 UNL     1      -1.920   4.516   6.013  1.00  0.00           H  
HETATM   80  H20 UNL     1      -0.715   6.206   4.474  1.00  0.00           H  
HETATM   81  H21 UNL     1      -0.819   5.052   3.152  1.00  0.00           H  
HETATM   82  H22 UNL     1       0.537   4.651   5.871  1.00  0.00           H  
HETATM   83  H23 UNL     1       0.663   3.452   4.532  1.00  0.00           H  
HETATM   84  H24 UNL     1       1.689   5.470   3.186  1.00  0.00           H  
HETATM   85  H25 UNL     1       1.623   6.412   4.673  1.00  0.00           H  
HETATM   86  H26 UNL     1       3.847   5.502   4.734  1.00  0.00           H  
HETATM   87  H27 UNL     1       2.785   4.795   6.000  1.00  0.00           H  
HETATM   88  H28 UNL     1       4.242   3.162   5.232  1.00  0.00           H  
HETATM   89  H29 UNL     1       2.688   2.649   4.527  1.00  0.00           H  
HETATM   90  H30 UNL     1       4.651   2.411   2.993  1.00  0.00           H  
HETATM   91  H31 UNL     1       5.013   4.136   3.152  1.00  0.00           H  
HETATM   92  H32 UNL     1       4.254   3.535   1.051  1.00  0.00           H  
HETATM   93  H33 UNL     1       3.088   4.697   1.626  1.00  0.00           H  
HETATM   94  H34 UNL     1       0.714   1.128   0.345  1.00  0.00           H  
HETATM   95  H35 UNL     1       1.506   2.301  -2.388  1.00  0.00           H  
HETATM   96  H36 UNL     1       0.705   0.669  -2.113  1.00  0.00           H  
HETATM   97  H37 UNL     1       5.381   0.265  -2.815  1.00  0.00           H  
HETATM   98  H38 UNL     1       4.773  -1.348  -2.450  1.00  0.00           H  
HETATM   99  H39 UNL     1       5.160   1.076  -0.511  1.00  0.00           H  
HETATM  100  H40 UNL     1       5.743  -0.448   1.140  1.00  0.00           H  
HETATM  101  H41 UNL     1       5.324  -2.659  -1.088  1.00  0.00           H  
HETATM  102  H42 UNL     1       6.500  -2.676   0.239  1.00  0.00           H  
HETATM  103  H43 UNL     1       4.836  -2.726   1.959  1.00  0.00           H  
HETATM  104  H44 UNL     1       4.331  -4.802  -0.212  1.00  0.00           H  
HETATM  105  H45 UNL     1       5.742  -5.953   1.009  1.00  0.00           H  
HETATM  106  H46 UNL     1       3.687  -5.094   2.690  1.00  0.00           H  
HETATM  107  H47 UNL     1       2.647  -5.529   1.235  1.00  0.00           H  
HETATM  108  H48 UNL     1       1.471  -3.656   1.931  1.00  0.00           H  
HETATM  109  H49 UNL     1       2.313  -3.254   3.833  1.00  0.00           H  
HETATM  110  H50 UNL     1       2.902  -1.513   1.046  1.00  0.00           H  
HETATM  111  H51 UNL     1       2.870  -2.476  -1.406  1.00  0.00           H  
HETATM  112  H52 UNL     1       0.963  -4.225   0.228  1.00  0.00           H  
HETATM  113  H53 UNL     1       1.579  -3.879  -2.753  1.00  0.00           H  
HETATM  114  H54 UNL     1      -0.001  -2.409  -2.649  1.00  0.00           H  
HETATM  115  H55 UNL     1       1.093  -6.185  -1.563  1.00  0.00           H  
HETATM  116  H56 UNL     1      -0.471  -5.524  -1.071  1.00  0.00           H  
HETATM  117  H57 UNL     1      -0.716  -6.978  -2.919  1.00  0.00           H  
HETATM  118  H58 UNL     1       0.465  -6.033  -3.920  1.00  0.00           H  
HETATM  119  H59 UNL     1      -1.243  -4.090  -3.831  1.00  0.00           H  
HETATM  120  H60 UNL     1      -2.300  -5.187  -2.858  1.00  0.00           H  
HETATM  121  H61 UNL     1      -1.229  -5.831  -5.607  1.00  0.00           H  
HETATM  122  H62 UNL     1      -2.881  -5.242  -5.286  1.00  0.00           H  
HETATM  123  H63 UNL     1      -2.880  -7.294  -3.541  1.00  0.00           H  
HETATM  124  H64 UNL     1      -3.300  -7.472  -5.277  1.00  0.00           H  
HETATM  125  H65 UNL     1      -1.623  -7.945  -4.726  1.00  0.00           H  
HETATM  126  H66 UNL     1      -0.314   3.553  -1.214  1.00  0.00           H  
HETATM  127  H67 UNL     1      -0.997   2.955   0.313  1.00  0.00           H  
HETATM  128  H68 UNL     1      -4.777   1.882  -0.646  1.00  0.00           H  
HETATM  129  H69 UNL     1      -3.154  -0.080  -3.203  1.00  0.00           H  
HETATM  130  H70 UNL     1      -1.526   0.723  -3.595  1.00  0.00           H  
HETATM  131  H71 UNL     1      -2.401   1.130  -5.939  1.00  0.00           H  
HETATM  132  H72 UNL     1      -1.628  -1.078  -4.815  1.00  0.00           H  
HETATM  133  H73 UNL     1      -4.802  -0.476  -4.890  1.00  0.00           H  
HETATM  134  H74 UNL     1      -4.463  -0.086  -6.584  1.00  0.00           H  
HETATM  135  H75 UNL     1      -6.750  -0.078  -7.001  1.00  0.00           H  
HETATM  136  H76 UNL     1      -8.219   0.525  -4.593  1.00  0.00           H  
CONECT    1    2   61   62   63
CONECT    2    3   64   65
CONECT    3    4   66   67
CONECT    4    5   68   69
CONECT    5    6   70   71
CONECT    6    7   72   73
CONECT    7    8   74   75
CONECT    8    9   76   77
CONECT    9   10   10   78
CONECT   10   11   79
CONECT   11   12   80   81
CONECT   12   13   82   83
CONECT   13   14   84   85
CONECT   14   15   86   87
CONECT   15   16   88   89
CONECT   16   17   90   91
CONECT   17   18   92   93
CONECT   18   19   19   20
CONECT   20   21
CONECT   21   22   46   94
CONECT   22   23   95   96
CONECT   23   24
CONECT   24   25   25   26
CONECT   26   27   97   98
CONECT   27   28   28   99
CONECT   28   29  100
CONECT   29   30  101  102
CONECT   30   31   36  103
CONECT   31   32   33  104
CONECT   32  105
CONECT   33   34  106  107
CONECT   34   35   36  108
CONECT   35  109
CONECT   36   37  110
CONECT   37   38   38  111
CONECT   38   39  112
CONECT   39   40   41  113
CONECT   40  114
CONECT   41   42  115  116
CONECT   42   43  117  118
CONECT   43   44  119  120
CONECT   44   45  121  122
CONECT   45  123  124  125
CONECT   46   47  126  127
CONECT   47   48
CONECT   48   49   49   50   51
CONECT   50  128
CONECT   51   52
CONECT   52   53  129  130
CONECT   53   54   55  131
CONECT   54  132
CONECT   55   56  133  134
CONECT   56   57
CONECT   57   58   58   59   60
CONECT   59  135
CONECT   60  136
END

HMDB0272753
     RDKit          3D
PGP(5-iso PGF2VI/18:1(9Z))
136136  0  0  0  0  0  0  0  0999 V2000
   -3.4352   -3.8570    0.0163 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1517   -2.3863    0.0777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7737   -2.0229    1.4985 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4783   -0.5147    1.5741 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
[(2S)-3-({[(2R)-3-{[(3Z)-5-[(1S,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3R)-3-hydroxyoct-1-en-1-yl]cyclopentyl]pent-3-enoyl]oxy}-2-[(9Z)-octadec-9-enoyloxy]propoxy](hydroxy)phosphoryl}oxy)-2-hydroxypropoxy]phosphonate	Generator

Chemical Formula

C₄₂H₇₆O₁₆P₂

Average Molecular Weight

899.002

Monoisotopic Molecular Weight

898.460860363

IUPAC Name

[(2S)-3-({[(2R)-3-{[(3Z)-5-[(1S,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3R)-3-hydroxyoct-1-en-1-yl]cyclopentyl]pent-3-enoyl]oxy}-2-[(9Z)-octadec-9-enoyloxy]propoxy](hydroxy)phosphoryl}oxy)-2-hydroxypropoxy]phosphonic acid

Traditional Name

(2S)-3-{[(2R)-3-{[(3Z)-5-[(1S,2R,3R,5S)-3,5-dihydroxy-2-[(1E,3R)-3-hydroxyoct-1-en-1-yl]cyclopentyl]pent-3-enoyl]oxy}-2-[(9Z)-octadec-9-enoyloxy]propoxy(hydroxy)phosphoryl]oxy}-2-hydroxypropoxyphosphonic acid

CAS Registry Number

Not Available

SMILES

CCCCCCCC\C=C/CCCCCCCC(=O)O[C@H](COC(=O)C\C=C/C[C@@H]1[C@@H](O)C[C@@H](O)[C@@H]1\C=C\[C@H](O)CCCCC)COP(O)(=O)OC[C@@H](O)COP(O)(O)=O

InChI Identifier

InChI=1S/C42H76O16P2/c1-3-5-7-8-9-10-11-12-13-14-15-16-17-18-20-26-42(48)58-36(33-57-60(52,53)56-31-35(44)30-55-59(49,50)51)32-54-41(47)25-22-21-24-37-38(40(46)29-39(37)45)28-27-34(43)23-19-6-4-2/h12-13,21-22,27-28,34-40,43-46H,3-11,14-20,23-26,29-33H2,1-2H3,(H,52,53)(H2,49,50,51)/b13-12-,22-21-,28-27+/t34-,35+,36-,37+,38-,39+,40-/m1/s1

InChI Key

WOGWYPOMTPWCTH-MKALCFMMSA-N

Chemical Taxonomy

Classification

Not classified

Ontology

Not Available

Not Available

Not Available

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.63	ALOGPS
logP	6.81	ChemAxon
logS	-5.6	ALOGPS
pKa (Strongest Acidic)	1.36	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	-3	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	256.04 Å²	ChemAxon
Rotatable Bond Count	39	ChemAxon
Refractivity	230.69 m³·mol⁻¹	ChemAxon
Polarizability	95.85 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	297.543	32859911
AllCCS	[M+H-H2O]+	297.824	32859911
AllCCS	[M+Na]+	297.151	32859911
AllCCS	[M+NH4]+	297.244	32859911
AllCCS	[M-H]-	296.611	32859911
AllCCS	[M+Na-2H]-	303.133	32859911
AllCCS	[M+HCOO]-	310.289	32859911
DeepCCS	[M+H]+	295.895	30932474
DeepCCS	[M-H]-	294.171	30932474
DeepCCS	[M-2H]-	328.202	30932474
DeepCCS	[M+Na]+	302.224	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
PGP(5-iso PGF2VI/18:1(9Z))	CCCCCCCC\C=C/CCCCCCCC(=O)O[C@H](COC(=O)C\C=C/C[C@@H]1[C@@H](O)C[C@@H](O)[C@@H]1\C=C\[C@H](O)CCCCC)COP(O)(=O)OC[C@@H](O)COP(O)(O)=O	5639.3	Standard polar	33892256
PGP(5-iso PGF2VI/18:1(9Z))	CCCCCCCC\C=C/CCCCCCCC(=O)O[C@H](COC(=O)C\C=C/C[C@@H]1[C@@H](O)C[C@@H](O)[C@@H]1\C=C\[C@H](O)CCCCC)COP(O)(=O)OC[C@@H](O)COP(O)(O)=O	4630.8	Standard non polar	33892256
PGP(5-iso PGF2VI/18:1(9Z))	CCCCCCCC\C=C/CCCCCCCC(=O)O[C@H](COC(=O)C\C=C/C[C@@H]1[C@@H](O)C[C@@H](O)[C@@H]1\C=C\[C@H](O)CCCCC)COP(O)(=O)OC[C@@H](O)COP(O)(O)=O	6414.2	Semi standard non polar	33892256

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PGP(5-iso PGF2VI/18:1(9Z)) 10V, Positive-QTOF	splash10-01qa-0011005490-f4d65504f082ad455567	2021-10-18	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PGP(5-iso PGF2VI/18:1(9Z)) 20V, Positive-QTOF	splash10-001i-3220004940-a8955b0db9c0dcfb7f48	2021-10-18	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PGP(5-iso PGF2VI/18:1(9Z)) 40V, Positive-QTOF	splash10-00ue-9500606300-233b5e9c43c7963ebda9	2021-10-18	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PGP(5-iso PGF2VI/18:1(9Z)) 10V, Negative-QTOF	splash10-0002-0000000090-6d5961a7962107b7dffb	2021-10-18	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PGP(5-iso PGF2VI/18:1(9Z)) 20V, Negative-QTOF	splash10-004j-9020025160-3ab4045815becba49c3b	2021-10-18	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PGP(5-iso PGF2VI/18:1(9Z)) 40V, Negative-QTOF	splash10-004i-9023101000-83f10b71fc27b7810f4c	2021-10-18	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Hajeyah AA, Griffiths WJ, Wang Y, Finch AJ, O'Donnell VB: The Biosynthesis of Enzymatically Oxidized Lipids. Front Endocrinol (Lausanne). 2020 Nov 19;11:591819. doi: 10.3389/fendo.2020.591819. eCollection 2020. [PubMed:33329396 ]

Showing metabocard for PGP(5-iso PGF2VI/18:1(9Z)) (HMDB0272753)

MOL for HMDB0272753 (PGP(5-iso PGF2VI/18:1(9Z)))

3D MOL for HMDB0272753 (PGP(5-iso PGF2VI/18:1(9Z)))

3D SDF for HMDB0272753 (PGP(5-iso PGF2VI/18:1(9Z)))

3D-SDF for HMDB0272753 (PGP(5-iso PGF2VI/18:1(9Z)))

PDB for HMDB0272753 (PGP(5-iso PGF2VI/18:1(9Z)))

3D PDB for HMDB0272753 (PGP(5-iso PGF2VI/18:1(9Z)))

SMILES for HMDB0272753 (PGP(5-iso PGF2VI/18:1(9Z)))

INCHI for HMDB0272753 (PGP(5-iso PGF2VI/18:1(9Z)))

Structure for HMDB0272753 (PGP(5-iso PGF2VI/18:1(9Z)))

3D Structure for HMDB0272753 (PGP(5-iso PGF2VI/18:1(9Z)))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

MS/MS Spectra