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Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-13 18:24:34 UTC

Update Date

2022-11-30 20:03:28 UTC

HMDB ID

HMDB0282133

Secondary Accession Numbers

None

Metabolite Identification

Common Name

PS(20:0/18:3(10,12,15)-OH(9))

Description

PS(20:0/18:3(10,12,15)-OH(9)) is an oxidized phosphatidylserine (PS). Oxidized phosphatidylserines are glycerophospholipids in which a phosphorylserine moiety occupies a glycerol substitution site and at least one of the fatty acyl chains has undergone oxidation. As all oxidized lipids, oxidized phosphatidylserines belong to a group of biomolecules that have a role as signaling molecules. The biosynthesis of oxidized lipids is mediated by several enzymatic families, including cyclooxygenases (COX), lipoxygenases (LOX) and cytochrome P450s (CYP). Non-enzymatically oxidized lipids are produced by uncontrolled oxidation through free radicals and are considered harmful to human health (PMID: 33329396 ). As is the case with diacylglycerols, phosphatidylserines can have many different combinations of fatty acids of varying lengths, saturation and degrees of oxidation attached at the C-1 and C-2 positions. PS(20:0/18:3(10,12,15)-OH(9)), in particular, consists of one chain of one eicosanoyl at the C-1 position and one chain of 9-hydroxyoctadecatrienoyl at the C-2 position. Phospholipids are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. Similarly to what occurs with phospholipids, the fatty acid distribution at the C-1 and C-2 positions of glycerol within oxidized phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. Oxidized PSs can be synthesized via three different routes. In one route, the oxidized PS is synthetized de novo following the same mechanisms as for PSs but incorporating oxidized acyl chains (PMID: 33329396 ). An alternative is the transacylation of one of the non-oxidized acyl chains with an oxidized acylCoA (PMID: 33329396 ). The third pathway results from the oxidation of the acyl chain while still attached to the PS backbone, mainly through the action of LOX (PMID: 33329396 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

PS(20:0/18:3(10,12,15)-OH(9))
  Mrv1652309132120242D          

 58 57  0  0  1  0            999 V2000
   -3.8020    0.3607    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0969    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3824    0.3590    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6679    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9699   -0.3554    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7950   -0.3554    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9591    0.3596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1679    0.0575    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6571    1.4866    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2447    0.7720    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    0.4699    1.1846    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1843    0.7721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8988    1.1846    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8987    2.0577    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6549    0.7482    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6550   -0.1249    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4110    1.1847    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5121    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5121    1.5410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2262    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9403    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6544    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3686    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0827    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7968    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5109    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2250    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9391    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6532    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3673    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0815    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.7956    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.5097    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.2239    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.9380    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.6521    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.3662    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -18.0803    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -1.5394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2236   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9377   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6518   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3660   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0801   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7942   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5083   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2225   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2225   -1.5394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9366   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6507   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3648   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.0789   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7930   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5071   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2212   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.9354   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.6495   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1 18  1  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  3  5  1  1  0  0  0
  3  6  1  0  0  0  0
  4  3  1  0  0  0  0
  6 39  1  0  0  0  0
  7  4  1  0  0  0  0
  8 10  1  0  0  0  0
  9 10  2  0  0  0  0
 10  7  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 13 12  1  0  0  0  0
 13 15  1  0  0  0  0
 13 14  1  6  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 39 40  2  0  0  0  0
 39 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 48 50  1  0  0  0  0
 50 51  2  0  0  0  0
 51 52  1  0  0  0  0
 52 53  2  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  2  0  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
M  END

HMDB0282133
     RDKit          3D
PS(20:0/18:3(10,12,15)-OH(9))
137136  0  0  0  0  0  0  0  0999 V2000
  -16.4448   -5.0480   -1.3068 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.1938   -5.1108   -0.4679 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.6135   -3.7357   -0.4109 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.1786   -2.7050   -1.0255 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.6018   -1.3256   -0.9727 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.3586   -1.3455   -0.1463 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1912   -1.0045   -0.6185 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9716   -1.0190    0.1752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8173   -0.6574   -0.3818 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5291   -0.6409    0.3391 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2313   -1.9331    0.8447 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4784    0.3009    1.4864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7248    1.7366    1.0718 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5693    2.6693    2.2453 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1853    2.6776    2.8462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2124    3.1706    1.8225 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7929    3.2573    2.2702 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1324    1.9870    2.6663 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0843    1.0495    1.5216 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0704    0.4140    1.0966 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8820    0.8039    0.8096 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8528   -0.0785   -0.2725 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7884   -1.1178   -0.2540 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5002   -0.4897   -0.2394 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6599   -1.2188   -0.3143 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5679   -2.4806   -0.3971 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0152   -0.5441   -0.3055 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0233   -1.5450   -0.7226 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4587   -0.9896   -0.7669 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5124    0.1591   -1.6876 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7883    0.7649   -2.0263 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6849    1.3535   -1.0331 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3097    0.4591   -0.0113 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3102    1.2199    0.8593 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3998    1.8573    0.1060 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2718    1.1278   -0.7838 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1688    0.0246   -0.3421 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5944   -1.1766    0.2461 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4975   -2.2988    0.5150 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6257   -2.1979    1.4425 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7825   -1.3214    1.2104 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8366   -1.4875    2.3310 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3541   -2.8791    2.4320 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0179   -3.3721    1.1613 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.5208   -4.7904    1.3292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5690    0.8252   -1.5022 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3532    1.4192   -1.2444 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8466    2.4520   -2.4652 P   0  0  0  0  0  5  0  0  0  0  0  0
    0.0966    3.5108   -1.9375 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0489    1.4844   -3.6279 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2070    3.1278   -3.1984 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5322    4.3703   -2.6577 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7461    4.8638   -3.3993 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1861    6.1662   -2.9250 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8669    3.9305   -3.2938 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6916    2.7169   -3.6223 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1415    4.3239   -2.8412 O   0  0  0  0  0  0  0  0  0  0  0  0
  -17.1581   -4.3637   -0.8112 H   0  0  0  0  0  0  0  0  0  0  0  0
  -16.1376   -4.7055   -2.3237 H   0  0  0  0  0  0  0  0  0  0  0  0
  -16.8763   -6.0713   -1.4084 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.4110   -5.7694   -0.9171 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.3676   -5.4652    0.5678 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6943   -3.5410    0.1463 H   0  0  0  0  0  0  0  0  0  0  0  0
  -16.0884   -2.8133   -1.5970 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3381   -0.9752   -1.9959 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.3433   -0.6413   -0.5281 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.4380   -1.6541    0.8838 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1529   -0.7009   -1.6630 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9870   -1.3166    1.2050 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8724   -0.3649   -1.4421 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7093   -0.3402   -0.3781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8223   -2.0765    1.6287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5448    0.1771    2.0380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2834   -0.0334    2.2073 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7639    1.8611    0.6776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0648    2.0237    0.2527 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8622    3.6843    1.8771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3325    2.4363    3.0326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2310    3.3543    3.7396 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8604    1.7035    3.2054 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3189    2.6702    0.8399 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5265    4.2395    1.6052 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2153    3.6529    1.3842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6805    4.0484    3.0460 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0573    2.2568    2.8947 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5195    1.5497    3.5908 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8709   -0.5111   -0.4058 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8054   -1.6927    0.7200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8303   -1.7881   -1.1116 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9764    0.3965   -0.8388 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2208   -0.2786    0.7740 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8159   -1.9408   -1.7179 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0467   -2.3770    0.0151 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7538   -0.7858    0.2918 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0930   -1.8270   -1.1130 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7899    0.9674   -1.3172 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0197   -0.1762   -2.6623 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3663   -0.0498   -2.6407 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5859    1.5441   -2.8547 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4731    1.9278   -1.6102 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1458    2.1590   -0.4129 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4970    0.2261    0.7480 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6701   -0.5035   -0.3594 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6526    2.0508    1.3092 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5753    0.6292    1.7380 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9296    2.6991   -0.5046 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0567    2.4984    0.8152 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.9798    1.8947   -1.2527 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6912    0.8105   -1.7222 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8392   -0.2345   -1.1825 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8698    0.4757    0.4500 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0599   -0.9923    1.2297 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8041   -1.5801   -0.4863 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8565   -2.7728   -0.4795 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.8151   -3.1398    0.9390 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0481   -3.2653    1.6457 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2492   -1.9716    2.5169 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.2898   -1.5078    0.2230 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.5724   -0.2463    1.2588 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.3488   -1.2081    3.2654 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.6291   -0.7686    2.1012 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.1716   -2.8545    3.2172 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.6282   -3.6057    2.8259 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.8695   -2.7375    0.8695 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.2403   -3.3661    0.3719 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.6218   -4.7582    1.4480 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.0942   -5.2559    2.2423 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.3266   -5.4237    0.4300 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3210    1.6481   -1.5064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6499    0.2802   -2.4381 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7630    1.1019   -3.2081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7589    4.2852   -1.5569 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0
  2  3  1  0
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 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
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 19 20  2  0
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 21 22  1  0
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 29 30  1  0
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 31 32  1  0
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 53 54  1  0
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 34104  1  0
 34105  1  0
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 37110  1  0
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 39115  1  0
 40116  1  0
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 50131  1  0
 52132  1  0
 52133  1  0
 53134  1  6
 54135  1  0
 54136  1  0
 57137  1  0
M  END

PS(20:0/18:3(10,12,15)-OH(9))
  Mrv1652309132120242D          

 58 57  0  0  1  0            999 V2000
   -3.8020    0.3607    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0969    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3824    0.3590    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6679    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9699   -0.3554    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7950   -0.3554    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9591    0.3596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1679    0.0575    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6571    1.4866    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2447    0.7720    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    0.4699    1.1846    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1843    0.7721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8988    1.1846    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8987    2.0577    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6549    0.7482    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6550   -0.1249    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4110    1.1847    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5121    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5121    1.5410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2262    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9403    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6544    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3686    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0827    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7968    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5109    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2250    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9391    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6532    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3673    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0815    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.7956    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.5097    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.2239    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.9380    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.5095   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.2236   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9377   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6518   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3660   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0801   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7942   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5083   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2225   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2225   -1.5394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9366   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  -11.3648   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.0789   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  -13.5071   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2212   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.9354   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.6495   -0.3549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1 18  1  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  3  5  1  1  0  0  0
  3  6  1  0  0  0  0
  4  3  1  0  0  0  0
  6 39  1  0  0  0  0
  7  4  1  0  0  0  0
  8 10  1  0  0  0  0
  9 10  2  0  0  0  0
 10  7  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 13 12  1  0  0  0  0
 13 15  1  0  0  0  0
 13 14  1  6  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 39 40  2  0  0  0  0
 39 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 48 50  1  0  0  0  0
 50 51  2  0  0  0  0
 51 52  1  0  0  0  0
 52 53  2  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  2  0  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0282133

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@](COC(=O)CCCCCCCCCCCCCCCCCCC)(COP(O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCCCCC(O)\C=C\C=C\C\C=C\CC

> <INCHI_IDENTIFIER>
InChI=1S/C44H80NO11P/c1-3-5-7-9-11-12-13-14-15-16-17-18-19-20-22-26-30-34-42(47)53-36-40(37-54-57(51,52)55-38-41(45)44(49)50)56-43(48)35-31-27-23-25-29-33-39(46)32-28-24-21-10-8-6-4-2/h6,8,21,24,28,32,39-41,46H,3-5,7,9-20,22-23,25-27,29-31,33-38,45H2,1-2H3,(H,49,50)(H,51,52)/b8-6+,24-21+,32-28+/t39?,40-,41+/m1/s1

> <INCHI_KEY>
WASAEZFXXNWVEK-WQXAJIAQSA-N

> <FORMULA>
C44H80NO11P

> <MOLECULAR_WEIGHT>
830.094

> <EXACT_MASS>
829.546899398

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
137

> <JCHEM_AVERAGE_POLARIZABILITY>
99.75979607963708

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-amino-3-({hydroxy[(2R)-2-{[(10E,12E,15E)-9-hydroxyoctadeca-10,12,15-trienoyl]oxy}-3-(icosanoyloxy)propoxy]phosphoryl}oxy)propanoic acid

> <ALOGPS_LOGP>
4.57

> <JCHEM_LOGP>
9.84422853017722

> <ALOGPS_LOGS>
-7.02

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
2.178472466012941

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.4683498175028928

> <JCHEM_PKA_STRONGEST_BASIC>
9.376604467854905

> <JCHEM_POLAR_SURFACE_AREA>
191.90999999999997

> <JCHEM_REFRACTIVITY>
229.30510000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
43

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.99e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-amino-3-{[hydroxy((2R)-2-{[(10E,12E,15E)-9-hydroxyoctadeca-10,12,15-trienoyl]oxy}-3-(icosanoyloxy)propoxy)phosphoryl]oxy}propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0282133
     RDKit          3D
PS(20:0/18:3(10,12,15)-OH(9))
137136  0  0  0  0  0  0  0  0999 V2000
  -16.4448   -5.0480   -1.3068 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.1938   -5.1108   -0.4679 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.6135   -3.7357   -0.4109 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.1786   -2.7050   -1.0255 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.6018   -1.3256   -0.9727 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.3586   -1.3455   -0.1463 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1912   -1.0045   -0.6185 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9716   -1.0190    0.1752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8173   -0.6574   -0.3818 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5291   -0.6409    0.3391 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2313   -1.9331    0.8447 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4784    0.3009    1.4864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7248    1.7366    1.0718 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5693    2.6693    2.2453 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 13-SEP-21   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: PS(20:0/18:3(10,12,15)-OH(9))                     
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   13-SEP-21         0                                  
HETATM    1  O   UNK     0      -7.097   0.673   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -5.781   1.440   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.447   0.670   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.113   1.440   0.000  0.00  0.00           C+0
HETATM    5  H   UNK     0      -3.677  -0.663   0.000  0.00  0.00           H+0
HETATM    6  O   UNK     0      -5.217  -0.663   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0      -1.790   0.671   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0       0.313   0.107   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      -1.227   2.775   0.000  0.00  0.00           O+0
HETATM   10  P   UNK     0      -0.457   1.441   0.000  0.00  0.00           P+0
HETATM   11  O   UNK     0       0.877   2.211   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       2.211   1.441   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.544   2.211   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0       3.544   3.841   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0       4.956   1.397   0.000  0.00  0.00           C+0
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HETATM   21  C   UNK     0     -11.089   1.436   0.000  0.00  0.00           C+0
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HETATM   30  C   UNK     0     -23.086   0.665   0.000  0.00  0.00           C+0
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HETATM   39  C   UNK     0      -6.551  -1.433   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -6.551  -2.873   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      -7.884  -0.662   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      -9.217  -1.433   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0     -10.550  -0.662   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0     -11.883  -1.433   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0     -13.216  -0.662   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0     -14.549  -1.433   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0     -15.882  -0.662   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0     -17.215  -1.433   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0     -17.215  -2.873   0.000  0.00  0.00           O+0
HETATM   50  C   UNK     0     -18.548  -0.662   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0     -19.881  -1.433   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0     -21.214  -0.662   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0     -22.547  -1.433   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0     -23.880  -0.662   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0     -25.213  -1.433   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0     -26.546  -0.662   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0     -27.879  -1.433   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0     -29.212  -0.662   0.000  0.00  0.00           C+0
CONECT    1   18    2                                                       
CONECT    2    1    3                                                       
CONECT    3    2    5    6    4                                             
CONECT    4    3    7                                                       
CONECT    5    3                                                            
CONECT    6    3   39                                                       
CONECT    7    4   10                                                       
CONECT    8   10                                                            
CONECT    9   10                                                            
CONECT   10    8    9    7   11                                             
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   15   14                                                  
CONECT   14   13                                                            
CONECT   15   13   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18    1   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37                                                            
CONECT   39    6   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49   50                                                  
CONECT   49   48                                                            
CONECT   50   48   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57                                                            
MASTER        0    0    0    0    0    0    0    0   58    0  114    0
END

COMPND    HMDB0282133
HETATM    1  C1  UNL     1     -16.445  -5.048  -1.307  1.00  0.00           C  
HETATM    2  C2  UNL     1     -15.194  -5.111  -0.468  1.00  0.00           C  
HETATM    3  C3  UNL     1     -14.613  -3.736  -0.411  1.00  0.00           C  
HETATM    4  C4  UNL     1     -15.179  -2.705  -1.026  1.00  0.00           C  
HETATM    5  C5  UNL     1     -14.602  -1.326  -0.973  1.00  0.00           C  
HETATM    6  C6  UNL     1     -13.359  -1.346  -0.146  1.00  0.00           C  
HETATM    7  C7  UNL     1     -12.191  -1.005  -0.619  1.00  0.00           C  
HETATM    8  C8  UNL     1     -10.972  -1.019   0.175  1.00  0.00           C  
HETATM    9  C9  UNL     1      -9.817  -0.657  -0.382  1.00  0.00           C  
HETATM   10  C10 UNL     1      -8.529  -0.641   0.339  1.00  0.00           C  
HETATM   11  O1  UNL     1      -8.231  -1.933   0.845  1.00  0.00           O  
HETATM   12  C11 UNL     1      -8.478   0.301   1.486  1.00  0.00           C  
HETATM   13  C12 UNL     1      -8.725   1.737   1.072  1.00  0.00           C  
HETATM   14  C13 UNL     1      -8.569   2.669   2.245  1.00  0.00           C  
HETATM   15  C14 UNL     1      -7.185   2.678   2.846  1.00  0.00           C  
HETATM   16  C15 UNL     1      -6.212   3.171   1.823  1.00  0.00           C  
HETATM   17  C16 UNL     1      -4.793   3.257   2.270  1.00  0.00           C  
HETATM   18  C17 UNL     1      -4.132   1.987   2.666  1.00  0.00           C  
HETATM   19  C18 UNL     1      -4.084   1.050   1.522  1.00  0.00           C  
HETATM   20  O2  UNL     1      -5.070   0.414   1.097  1.00  0.00           O  
HETATM   21  O3  UNL     1      -2.882   0.804   0.810  1.00  0.00           O  
HETATM   22  C19 UNL     1      -2.853  -0.078  -0.272  1.00  0.00           C  
HETATM   23  C20 UNL     1      -1.788  -1.118  -0.254  1.00  0.00           C  
HETATM   24  O4  UNL     1      -0.500  -0.490  -0.239  1.00  0.00           O  
HETATM   25  C21 UNL     1       0.660  -1.219  -0.314  1.00  0.00           C  
HETATM   26  O5  UNL     1       0.568  -2.481  -0.397  1.00  0.00           O  
HETATM   27  C22 UNL     1       2.015  -0.544  -0.306  1.00  0.00           C  
HETATM   28  C23 UNL     1       3.023  -1.545  -0.723  1.00  0.00           C  
HETATM   29  C24 UNL     1       4.459  -0.990  -0.767  1.00  0.00           C  
HETATM   30  C25 UNL     1       4.512   0.159  -1.688  1.00  0.00           C  
HETATM   31  C26 UNL     1       5.788   0.765  -2.026  1.00  0.00           C  
HETATM   32  C27 UNL     1       6.685   1.353  -1.033  1.00  0.00           C  
HETATM   33  C28 UNL     1       7.310   0.459  -0.011  1.00  0.00           C  
HETATM   34  C29 UNL     1       8.310   1.220   0.859  1.00  0.00           C  
HETATM   35  C30 UNL     1       9.400   1.857   0.106  1.00  0.00           C  
HETATM   36  C31 UNL     1      10.272   1.128  -0.784  1.00  0.00           C  
HETATM   37  C32 UNL     1      11.169   0.025  -0.342  1.00  0.00           C  
HETATM   38  C33 UNL     1      10.594  -1.177   0.246  1.00  0.00           C  
HETATM   39  C34 UNL     1      11.497  -2.299   0.515  1.00  0.00           C  
HETATM   40  C35 UNL     1      12.626  -2.198   1.443  1.00  0.00           C  
HETATM   41  C36 UNL     1      13.782  -1.321   1.210  1.00  0.00           C  
HETATM   42  C37 UNL     1      14.837  -1.487   2.331  1.00  0.00           C  
HETATM   43  C38 UNL     1      15.354  -2.879   2.432  1.00  0.00           C  
HETATM   44  C39 UNL     1      16.018  -3.372   1.161  1.00  0.00           C  
HETATM   45  C40 UNL     1      16.521  -4.790   1.329  1.00  0.00           C  
HETATM   46  C41 UNL     1      -2.569   0.825  -1.502  1.00  0.00           C  
HETATM   47  O6  UNL     1      -1.353   1.419  -1.244  1.00  0.00           O  
HETATM   48  P1  UNL     1      -0.847   2.452  -2.465  1.00  0.00           P  
HETATM   49  O7  UNL     1       0.097   3.511  -1.937  1.00  0.00           O  
HETATM   50  O8  UNL     1      -0.049   1.484  -3.628  1.00  0.00           O  
HETATM   51  O9  UNL     1      -2.207   3.128  -3.198  1.00  0.00           O  
HETATM   52  C42 UNL     1      -2.532   4.370  -2.658  1.00  0.00           C  
HETATM   53  C43 UNL     1      -3.746   4.864  -3.399  1.00  0.00           C  
HETATM   54  N1  UNL     1      -4.186   6.166  -2.925  1.00  0.00           N  
HETATM   55  C44 UNL     1      -4.867   3.931  -3.294  1.00  0.00           C  
HETATM   56  O10 UNL     1      -4.692   2.717  -3.622  1.00  0.00           O  
HETATM   57  O11 UNL     1      -6.141   4.324  -2.841  1.00  0.00           O  
HETATM   58  H1  UNL     1     -17.158  -4.364  -0.811  1.00  0.00           H  
HETATM   59  H2  UNL     1     -16.138  -4.706  -2.324  1.00  0.00           H  
HETATM   60  H3  UNL     1     -16.876  -6.071  -1.408  1.00  0.00           H  
HETATM   61  H4  UNL     1     -14.411  -5.769  -0.917  1.00  0.00           H  
HETATM   62  H5  UNL     1     -15.368  -5.465   0.568  1.00  0.00           H  
HETATM   63  H6  UNL     1     -13.694  -3.541   0.146  1.00  0.00           H  
HETATM   64  H7  UNL     1     -16.088  -2.813  -1.597  1.00  0.00           H  
HETATM   65  H8  UNL     1     -14.338  -0.975  -1.996  1.00  0.00           H  
HETATM   66  H9  UNL     1     -15.343  -0.641  -0.528  1.00  0.00           H  
HETATM   67  H10 UNL     1     -13.438  -1.654   0.884  1.00  0.00           H  
HETATM   68  H11 UNL     1     -12.153  -0.701  -1.663  1.00  0.00           H  
HETATM   69  H12 UNL     1     -10.987  -1.317   1.205  1.00  0.00           H  
HETATM   70  H13 UNL     1      -9.872  -0.365  -1.442  1.00  0.00           H  
HETATM   71  H14 UNL     1      -7.709  -0.340  -0.378  1.00  0.00           H  
HETATM   72  H15 UNL     1      -8.822  -2.076   1.629  1.00  0.00           H  
HETATM   73  H16 UNL     1      -7.545   0.177   2.038  1.00  0.00           H  
HETATM   74  H17 UNL     1      -9.283  -0.033   2.207  1.00  0.00           H  
HETATM   75  H18 UNL     1      -9.764   1.861   0.678  1.00  0.00           H  
HETATM   76  H19 UNL     1      -8.065   2.024   0.253  1.00  0.00           H  
HETATM   77  H20 UNL     1      -8.862   3.684   1.877  1.00  0.00           H  
HETATM   78  H21 UNL     1      -9.333   2.436   3.033  1.00  0.00           H  
HETATM   79  H22 UNL     1      -7.231   3.354   3.740  1.00  0.00           H  
HETATM   80  H23 UNL     1      -6.860   1.704   3.205  1.00  0.00           H  
HETATM   81  H24 UNL     1      -6.319   2.670   0.840  1.00  0.00           H  
HETATM   82  H25 UNL     1      -6.526   4.239   1.605  1.00  0.00           H  
HETATM   83  H26 UNL     1      -4.215   3.653   1.384  1.00  0.00           H  
HETATM   84  H27 UNL     1      -4.680   4.048   3.046  1.00  0.00           H  
HETATM   85  H28 UNL     1      -3.057   2.257   2.895  1.00  0.00           H  
HETATM   86  H29 UNL     1      -4.519   1.550   3.591  1.00  0.00           H  
HETATM   87  H30 UNL     1      -3.871  -0.511  -0.406  1.00  0.00           H  
HETATM   88  H31 UNL     1      -1.805  -1.693   0.720  1.00  0.00           H  
HETATM   89  H32 UNL     1      -1.830  -1.788  -1.112  1.00  0.00           H  
HETATM   90  H33 UNL     1       1.976   0.396  -0.839  1.00  0.00           H  
HETATM   91  H34 UNL     1       2.221  -0.279   0.774  1.00  0.00           H  
HETATM   92  H35 UNL     1       2.816  -1.941  -1.718  1.00  0.00           H  
HETATM   93  H36 UNL     1       3.047  -2.377   0.015  1.00  0.00           H  
HETATM   94  H37 UNL     1       4.754  -0.786   0.292  1.00  0.00           H  
HETATM   95  H38 UNL     1       5.093  -1.827  -1.113  1.00  0.00           H  
HETATM   96  H39 UNL     1       3.790   0.967  -1.317  1.00  0.00           H  
HETATM   97  H40 UNL     1       4.020  -0.176  -2.662  1.00  0.00           H  
HETATM   98  H41 UNL     1       6.366  -0.050  -2.641  1.00  0.00           H  
HETATM   99  H42 UNL     1       5.586   1.544  -2.855  1.00  0.00           H  
HETATM  100  H43 UNL     1       7.473   1.928  -1.610  1.00  0.00           H  
HETATM  101  H44 UNL     1       6.146   2.159  -0.413  1.00  0.00           H  
HETATM  102  H45 UNL     1       6.497   0.226   0.748  1.00  0.00           H  
HETATM  103  H46 UNL     1       7.670  -0.503  -0.359  1.00  0.00           H  
HETATM  104  H47 UNL     1       7.653   2.051   1.309  1.00  0.00           H  
HETATM  105  H48 UNL     1       8.575   0.629   1.738  1.00  0.00           H  
HETATM  106  H49 UNL     1       8.930   2.699  -0.505  1.00  0.00           H  
HETATM  107  H50 UNL     1      10.057   2.498   0.815  1.00  0.00           H  
HETATM  108  H51 UNL     1      10.980   1.895  -1.253  1.00  0.00           H  
HETATM  109  H52 UNL     1       9.691   0.810  -1.722  1.00  0.00           H  
HETATM  110  H53 UNL     1      11.839  -0.235  -1.183  1.00  0.00           H  
HETATM  111  H54 UNL     1      11.870   0.476   0.450  1.00  0.00           H  
HETATM  112  H55 UNL     1      10.060  -0.992   1.230  1.00  0.00           H  
HETATM  113  H56 UNL     1       9.804  -1.580  -0.486  1.00  0.00           H  
HETATM  114  H57 UNL     1      11.856  -2.773  -0.479  1.00  0.00           H  
HETATM  115  H58 UNL     1      10.815  -3.140   0.939  1.00  0.00           H  
HETATM  116  H59 UNL     1      13.048  -3.265   1.646  1.00  0.00           H  
HETATM  117  H60 UNL     1      12.249  -1.972   2.517  1.00  0.00           H  
HETATM  118  H61 UNL     1      14.290  -1.508   0.223  1.00  0.00           H  
HETATM  119  H62 UNL     1      13.572  -0.246   1.259  1.00  0.00           H  
HETATM  120  H63 UNL     1      14.349  -1.208   3.265  1.00  0.00           H  
HETATM  121  H64 UNL     1      15.629  -0.769   2.101  1.00  0.00           H  
HETATM  122  H65 UNL     1      16.172  -2.854   3.217  1.00  0.00           H  
HETATM  123  H66 UNL     1      14.628  -3.606   2.826  1.00  0.00           H  
HETATM  124  H67 UNL     1      16.869  -2.738   0.870  1.00  0.00           H  
HETATM  125  H68 UNL     1      15.240  -3.366   0.372  1.00  0.00           H  
HETATM  126  H69 UNL     1      17.622  -4.758   1.448  1.00  0.00           H  
HETATM  127  H70 UNL     1      16.094  -5.256   2.242  1.00  0.00           H  
HETATM  128  H71 UNL     1      16.327  -5.424   0.430  1.00  0.00           H  
HETATM  129  H72 UNL     1      -3.321   1.648  -1.506  1.00  0.00           H  
HETATM  130  H73 UNL     1      -2.650   0.280  -2.438  1.00  0.00           H  
HETATM  131  H74 UNL     1       0.763   1.102  -3.208  1.00  0.00           H  
HETATM  132  H75 UNL     1      -2.759   4.285  -1.557  1.00  0.00           H  
HETATM  133  H76 UNL     1      -1.676   5.037  -2.846  1.00  0.00           H  
HETATM  134  H77 UNL     1      -3.454   4.990  -4.466  1.00  0.00           H  
HETATM  135  H78 UNL     1      -4.548   6.081  -1.953  1.00  0.00           H  
HETATM  136  H79 UNL     1      -3.419   6.883  -3.004  1.00  0.00           H  
HETATM  137  H80 UNL     1      -6.349   4.497  -1.867  1.00  0.00           H  
CONECT    1    2   58   59   60
CONECT    2    3   61   62
CONECT    3    4    4   63
CONECT    4    5   64
CONECT    5    6   65   66
CONECT    6    7    7   67
CONECT    7    8   68
CONECT    8    9    9   69
CONECT    9   10   70
CONECT   10   11   12   71
CONECT   11   72
CONECT   12   13   73   74
CONECT   13   14   75   76
CONECT   14   15   77   78
CONECT   15   16   79   80
CONECT   16   17   81   82
CONECT   17   18   83   84
CONECT   18   19   85   86
CONECT   19   20   20   21
CONECT   21   22
CONECT   22   23   46   87
CONECT   23   24   88   89
CONECT   24   25
CONECT   25   26   26   27
CONECT   27   28   90   91
CONECT   28   29   92   93
CONECT   29   30   94   95
CONECT   30   31   96   97
CONECT   31   32   98   99
CONECT   32   33  100  101
CONECT   33   34  102  103
CONECT   34   35  104  105
CONECT   35   36  106  107
CONECT   36   37  108  109
CONECT   37   38  110  111
CONECT   38   39  112  113
CONECT   39   40  114  115
CONECT   40   41  116  117
CONECT   41   42  118  119
CONECT   42   43  120  121
CONECT   43   44  122  123
CONECT   44   45  124  125
CONECT   45  126  127  128
CONECT   46   47  129  130
CONECT   47   48
CONECT   48   49   49   50   51
CONECT   50  131
CONECT   51   52
CONECT   52   53  132  133
CONECT   53   54   55  134
CONECT   54  135  136
CONECT   55   56   56   57
CONECT   57  137
END

HMDB0282133
     RDKit          3D
PS(20:0/18:3(10,12,15)-OH(9))
137136  0  0  0  0  0  0  0  0999 V2000
  -16.4448   -5.0480   -1.3068 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.1938   -5.1108   -0.4679 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.6135   -3.7357   -0.4109 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.1786   -2.7050   -1.0255 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.6018   -1.3256   -0.9727 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.3586   -1.3455   -0.1463 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1912   -1.0045   -0.6185 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9716   -1.0190    0.1752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8173   -0.6574   -0.3818 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(2S)-2-Amino-3-({hydroxy[(2R)-2-{[(10E,12E,15E)-9-hydroxyoctadeca-10,12,15-trienoyl]oxy}-3-(icosanoyloxy)propoxy]phosphoryl}oxy)propanoate	Generator

Chemical Formula

C₄₄H₈₀NO₁₁P

Average Molecular Weight

830.094

Monoisotopic Molecular Weight

829.546899398

IUPAC Name

(2S)-2-amino-3-({hydroxy[(2R)-2-{[(10E,12E,15E)-9-hydroxyoctadeca-10,12,15-trienoyl]oxy}-3-(icosanoyloxy)propoxy]phosphoryl}oxy)propanoic acid

Traditional Name

(2S)-2-amino-3-{[hydroxy((2R)-2-{[(10E,12E,15E)-9-hydroxyoctadeca-10,12,15-trienoyl]oxy}-3-(icosanoyloxy)propoxy)phosphoryl]oxy}propanoic acid

CAS Registry Number

Not Available

SMILES

[H][C@@](COC(=O)CCCCCCCCCCCCCCCCCCC)(COP(O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCCCCC(O)\C=C\C=C\C\C=C\CC

InChI Identifier

InChI=1S/C44H80NO11P/c1-3-5-7-9-11-12-13-14-15-16-17-18-19-20-22-26-30-34-42(47)53-36-40(37-54-57(51,52)55-38-41(45)44(49)50)56-43(48)35-31-27-23-25-29-33-39(46)32-28-24-21-10-8-6-4-2/h6,8,21,24,28,32,39-41,46H,3-5,7,9-20,22-23,25-27,29-31,33-38,45H2,1-2H3,(H,49,50)(H,51,52)/b8-6+,24-21+,32-28+/t39?,40-,41+/m1/s1

InChI Key

WASAEZFXXNWVEK-WQXAJIAQSA-N

Chemical Taxonomy

Classification

Not classified

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Organelle

endoplasmic reticulum (HMDB: HMDB0282133)

golgi apparatus membrane (HMDB: HMDB0282133)
cell membrane (HMDB: HMDB0282133)

Cell

All cells and tissues (HMDB: HMDB0282133)

Process

Naturally occurring process

Biological process

Biochemical pathway

Metabolic pathway

phosphatidylserine biosynthesis (HMDB: HMDB0282133)

Role

Biological role

Nutrient

Nutrient (PMID: 15979148)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.57	ALOGPS
logP	9.84	ChemAxon
logS	-7	ALOGPS
pKa (Strongest Acidic)	1.47	ChemAxon
pKa (Strongest Basic)	9.38	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	191.91 Å²	ChemAxon
Rotatable Bond Count	43	ChemAxon
Refractivity	229.31 m³·mol⁻¹	ChemAxon
Polarizability	99.76 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	296.292	32859911
AllCCS	[M+H-H2O]+	296.343	32859911
AllCCS	[M+Na]+	296.181	32859911
AllCCS	[M+NH4]+	296.21	32859911
AllCCS	[M-H]-	291.449	32859911
AllCCS	[M+Na-2H]-	297.592	32859911
AllCCS	[M+HCOO]-	304.358	32859911
DeepCCS	[M+H]+	251.794	30932474
DeepCCS	[M-H]-	248.567	30932474
DeepCCS	[M-2H]-	282.819	30932474
DeepCCS	[M+Na]+	258.939	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
PS(20:0/18:3(10,12,15)-OH(9))	[H][C@@](COC(=O)CCCCCCCCCCCCCCCCCCC)(COP(O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCCCCC(O)\C=C\C=C\C\C=C\CC	5805.0	Standard polar	33892256
PS(20:0/18:3(10,12,15)-OH(9))	[H][C@@](COC(=O)CCCCCCCCCCCCCCCCCCC)(COP(O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCCCCC(O)\C=C\C=C\C\C=C\CC	5089.2	Standard non polar	33892256
PS(20:0/18:3(10,12,15)-OH(9))	[H][C@@](COC(=O)CCCCCCCCCCCCCCCCCCC)(COP(O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCCCCC(O)\C=C\C=C\C\C=C\CC	5955.0	Semi standard non polar	33892256

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(20:0/18:3(10,12,15)-OH(9)) 10V, Positive-QTOF	splash10-001i-0000001090-f101eb1b7f9920405684	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(20:0/18:3(10,12,15)-OH(9)) 20V, Positive-QTOF	splash10-000t-0003069160-79c1b10b3ae618f7e007	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(20:0/18:3(10,12,15)-OH(9)) 40V, Positive-QTOF	splash10-0002-0003069110-adb9ecfee01250dd7b44	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(20:0/18:3(10,12,15)-OH(9)) 10V, Positive-QTOF	splash10-000b-0000009990-6951eadf05b7549c6d4c	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(20:0/18:3(10,12,15)-OH(9)) 20V, Positive-QTOF	splash10-000e-0900009990-690202fce9aa19cffe79	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(20:0/18:3(10,12,15)-OH(9)) 40V, Positive-QTOF	splash10-000e-0900009990-690202fce9aa19cffe79	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(20:0/18:3(10,12,15)-OH(9)) 10V, Negative-QTOF	splash10-004i-0000000090-a3f9f317e4e4f8500f6f	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(20:0/18:3(10,12,15)-OH(9)) 20V, Negative-QTOF	splash10-004i-0000000190-b9a36d74768bd76bf42a	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(20:0/18:3(10,12,15)-OH(9)) 40V, Negative-QTOF	splash10-002g-0033900530-56f4ab4f4ff690f830e7	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(20:0/18:3(10,12,15)-OH(9)) 10V, Positive-QTOF	splash10-0uxr-0000001690-3935a76659542d08453b	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(20:0/18:3(10,12,15)-OH(9)) 20V, Positive-QTOF	splash10-0udi-0000000290-8186986654e7d36d88da	2021-09-28	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PS(20:0/18:3(10,12,15)-OH(9)) 40V, Positive-QTOF	splash10-0a4i-0090003310-0abaa10a5c7db86c324a	2021-09-28	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Hajeyah AA, Griffiths WJ, Wang Y, Finch AJ, O'Donnell VB: The Biosynthesis of Enzymatically Oxidized Lipids. Front Endocrinol (Lausanne). 2020 Nov 19;11:591819. doi: 10.3389/fendo.2020.591819. eCollection 2020. [PubMed:33329396 ]

Showing metabocard for PS(20:0/18:3(10,12,15)-OH(9)) (HMDB0282133)

MOL for HMDB0282133 (PS(20:0/18:3(10,12,15)-OH(9)))

3D MOL for HMDB0282133 (PS(20:0/18:3(10,12,15)-OH(9)))

3D SDF for HMDB0282133 (PS(20:0/18:3(10,12,15)-OH(9)))

3D-SDF for HMDB0282133 (PS(20:0/18:3(10,12,15)-OH(9)))

PDB for HMDB0282133 (PS(20:0/18:3(10,12,15)-OH(9)))

3D PDB for HMDB0282133 (PS(20:0/18:3(10,12,15)-OH(9)))

SMILES for HMDB0282133 (PS(20:0/18:3(10,12,15)-OH(9)))

INCHI for HMDB0282133 (PS(20:0/18:3(10,12,15)-OH(9)))

Structure for HMDB0282133 (PS(20:0/18:3(10,12,15)-OH(9)))

3D Structure for HMDB0282133 (PS(20:0/18:3(10,12,15)-OH(9)))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

MS/MS Spectra