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Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-17 13:40:22 UTC

Update Date

2022-11-30 20:08:32 UTC

HMDB ID

HMDB0293314

Secondary Accession Numbers

None

Metabolite Identification

Common Name

CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0)

Description

CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0) is an oxidized CDP-diacylglycerol (CDP-DG). Oxidized CDP-diacylglycerols are glycerophospholipids in which a cytidine diphosphate moiety occupies a glycerol substitution site and at least one of the fatty acyl chains has undergone oxidation. As all oxidized lipids, oxidized CDP-diacylglycerols belong to a group of biomolecules that have a role as signaling molecules. The biosynthesis of oxidized lipids is mediated by several enzymatic families, including cyclooxygenases (COX), lipoxygenases (LOX) and cytochrome P450s (CYP). Non-enzymatically oxidized lipids are produced by uncontrolled oxidation through free radicals and are considered harmful to human health (PMID: 33329396 ). As is the case with diacylglycerols, CDP-diacylglycerols can have many different combinations of fatty acids of varying lengths, saturation and degrees of oxidation attached at the C-1 and C-2 positions. CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0), in particular, consists of one chain of one 9,10-hydroxy-octadecenoyl at the C-1 position and one chain of 10-methylundecanoyl at the C-2 position. Phospholipids are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. Similarly to what occurs with phospholipids, the fatty acid distribution at the C-1 and C-2 positions of glycerol within oxidized phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. Oxidized CDP-DGs can be synthesized via three different routes. In one route, the oxidized CDP-DG is synthetized de novo following the same mechanisms as for CDP-DGs but incorporating oxidized acyl chains (PMID: 33329396 ). An alternative is the transacylation of one of the non-oxidized acyl chains with an oxidized acylCoA (PMID: 33329396 ). The third pathway results from the oxidation of the acyl chain while still attached to the CDP-DG backbone, mainly through the action of LOX (PMID: 33329396 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0)
  Mrv1652309172115402D          

 65 66  0  0  1  0            999 V2000
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   -1.6679    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9699   -0.3554    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7950   -0.3554    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.0908   -1.0682    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.9068    0.3718    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1918    0.7835    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    0.4769    0.3718    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    6.1041   -0.4532    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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  -10.9391    0.3564    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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  -13.1923    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.9065    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.6206    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.3347    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -9.2225   -0.7412    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9366   -0.3281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  -10.6507    0.0838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1 32  1  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  3  5  1  1  0  0  0
  3  6  1  0  0  0  0
  4  3  1  0  0  0  0
  6 53  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 17  1  0  0  0  0
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 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
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 13 16  2  0  0  0  0
 14  4  1  0  0  0  0
 21 22  1  0  0  0  0
 21 19  2  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 23 20  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 21  1  0  0  0  0
 27 28  1  0  0  0  0
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 29  7  1  6  0  0  0
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 31  9  1  1  0  0  0
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 61 62  1  0  0  0  0
 62 63  1  0  0  0  0
 63 64  1  0  0  0  0
 63 65  1  0  0  0  0
M  END

HMDB0293314
     RDKit          3D
CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0)
139140  0  0  0  0  0  0  0  0999 V2000
   -6.6756   -2.8951    4.2822 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9748   -2.1882    4.2996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1635   -1.0638    3.3804 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3340    0.1487    3.4653 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8609   -0.0660    3.2707 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2020    1.2735    3.2834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3029    1.6477    4.1388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7881    0.8230    5.2342 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3062    0.5411    5.1582 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0328   -0.1293    3.9922 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4469    1.7858    5.2424 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6282    2.6256    4.1845 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0131    1.3967    5.4046 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9481    2.5157    5.5124 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0554    3.4412    4.3570 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1191    4.5176    4.6692 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2276    5.4409    3.4533 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2563    6.5058    3.6585 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3926    7.3918    2.4591 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8246    6.5234    1.3066 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0043    6.1023    1.3177 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0179    6.1705    0.2614 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2830    5.3713   -0.8425 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4816    3.9317   -0.6722 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3522    3.3966    0.4046 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0550    1.9834    0.4001 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8896    1.1577    1.5692 P   0  0  0  0  0  5  0  0  0  0  0  0
    5.1450    2.1293    2.7244 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3936    0.7084    0.9777 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0255   -0.1371    2.2137 O   0  0  0  0  0  0  0  0  0  0  0  0
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    4.2284   -1.1799   -0.1934 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9580   -2.6418    1.5790 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8954   -0.3467    0.5278 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0802   -1.2531   -0.1434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2078   -0.6950   -0.6334 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8978   -1.7243   -1.2876 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1336   -1.0841   -1.5405 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0552   -1.9224   -2.2129 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0897   -3.2502   -2.0457 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9812   -4.0624   -2.7106 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8983   -3.5087   -3.6013 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.9655   -0.1577   -3.2762 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5186   -0.6917   -0.1327 C   0  0  2  0  0  0  0  0  0  0  0  0
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    3.0078    2.3101   -2.4846 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9350    1.9991   -1.8692 O   0  0  0  0  0  0  0  0  0  0  0  0
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    2.3333    0.4521   -3.9779 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6606   -0.2286   -5.2855 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.1384   -2.0224   -6.8577 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3337   -3.2348   -7.2371 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5245   -4.3198   -6.1820 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7536   -5.5621   -6.5200 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9427   -6.6377   -5.4814 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4834   -6.1969   -4.1169 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3706   -7.0721   -5.4562 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1596   -2.8218    3.3099 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0088   -2.6495    5.1451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8757   -4.0005    4.3963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1470   -1.8092    5.3598 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7828   -2.9466    4.0803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2798   -0.7963    3.4044 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0780   -1.4876    2.3172 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5270    0.7109    4.4290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6441    0.8471    2.6225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7572   -0.5670    2.2806 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4386   -0.7420    4.0038 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4991    2.0155    2.5022 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8921    2.6764    4.0499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9079    1.4328    6.2014 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3619   -0.0899    5.4549 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0227   -0.1685    5.9945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1998   -0.6530    3.9820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7605    2.3506    6.1625 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5172    2.2352    3.3003 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0343    0.8089    6.3697 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2525    0.6660    4.5949 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6535    3.1005    6.4409 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9563    2.0478    5.7387 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4042    2.8488    3.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1274    3.9630    4.0650 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8329    5.0703    5.5814 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0547    3.9739    4.8779 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4413    4.8135    2.5762 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2284    5.9343    3.3722 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9983    7.0544    4.5883 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2731    6.0652    3.8557 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2718    8.0727    2.6489 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4906    7.9630    2.2518 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3394    5.4829   -1.4911 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0565    5.8462   -1.5208 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4457    3.4943   -0.4280 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4147    3.4328    0.1061 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1271    3.6859    1.4291 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8918    1.5471    0.7902 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5645   -3.0038    2.2601 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6515   -1.5871   -1.0466 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9422   -2.1783    0.4655 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0078    0.1428   -1.3106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9394   -0.1257   -2.0967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4030   -3.7227   -1.3693 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0305   -5.1430   -2.5978 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8339   -4.3593   -4.0679 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5383   -4.8613   -5.1554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8602   -1.5447    0.4676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1457    1.1345    0.3462 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9752   -0.6005    1.4160 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1926    1.4883   -0.5092 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2087    2.3109   -4.6072 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3463    1.2166   -3.7994 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3474   -0.2597   -3.1257 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2989    0.8460   -4.0551 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6174    0.4789   -6.1354 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6987   -0.6269   -5.2861 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7231   -1.0455   -5.5893 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9020   -2.1393   -4.7005 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9246   -1.2154   -7.6194 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2283   -2.2280   -6.9096 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7212   -3.6494   -8.1893 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2603   -3.0371   -7.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5933   -4.5643   -6.1452 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1056   -3.9194   -5.2338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3538   -5.3339   -6.5392 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9847   -5.9113   -7.5393 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3152   -7.5413   -5.7344 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4415   -7.0984   -3.4390 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2114   -5.4978   -3.6796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5571   -5.8163   -4.1282 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0460   -6.2602   -5.1267 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6918   -7.3922   -6.4848 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5203   -7.9776   -4.8114 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  2  0
 27 29  1  0
 27 30  1  0
 30 31  1  0
 31 32  2  0
 31 33  1  0
 31 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  1  0
 37 38  1  0
 38 39  1  0
 39 40  1  0
 40 41  2  0
 41 42  1  0
 42 43  1  0
 42 44  2  0
 44 45  1  0
 45 46  2  0
 38 47  1  0
 47 48  1  0
 47 49  1  0
 49 50  1  0
 24 51  1  0
 51 52  1  0
 52 53  2  0
 52 54  1  0
 54 55  1  0
 55 56  1  0
 56 57  1  0
 57 58  1  0
 58 59  1  0
 59 60  1  0
 60 61  1  0
 61 62  1  0
 62 63  1  0
 62 64  1  0
 49 36  1  0
 45 39  1  0
  1 65  1  0
  1 66  1  0
  1 67  1  0
  2 68  1  0
  2 69  1  0
  3 70  1  0
  3 71  1  0
  4 72  1  0
  4 73  1  0
  5 74  1  0
  5 75  1  0
  6 76  1  0
  7 77  1  0
  8 78  1  0
  8 79  1  0
  9 80  1  1
 10 81  1  0
 11 82  1  1
 12 83  1  0
 13 84  1  0
 13 85  1  0
 14 86  1  0
 14 87  1  0
 15 88  1  0
 15 89  1  0
 16 90  1  0
 16 91  1  0
 17 92  1  0
 17 93  1  0
 18 94  1  0
 18 95  1  0
 19 96  1  0
 19 97  1  0
 23 98  1  0
 23 99  1  0
 24100  1  1
 25101  1  0
 25102  1  0
 29103  1  0
 33104  1  0
 35105  1  0
 35106  1  0
 36107  1  6
 38108  1  6
 40109  1  0
 41110  1  0
 43111  1  0
 43112  1  0
 47113  1  1
 48114  1  0
 49115  1  1
 50116  1  0
 54117  1  0
 54118  1  0
 55119  1  0
 55120  1  0
 56121  1  0
 56122  1  0
 57123  1  0
 57124  1  0
 58125  1  0
 58126  1  0
 59127  1  0
 59128  1  0
 60129  1  0
 60130  1  0
 61131  1  0
 61132  1  0
 62133  1  0
 63134  1  0
 63135  1  0
 63136  1  0
 64137  1  0
 64138  1  0
 64139  1  0
M  END

CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0)
  Mrv1652309172115402D          

 65 66  0  0  1  0            999 V2000
   -3.8020    0.3607    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0969    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3824    0.3590    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6679    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9699   -0.3554    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7950   -0.3554    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8812   -1.0765    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0908   -1.0682    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6217    0.7835    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9068    0.3718    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1918    0.7835    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    0.4769    0.3718    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2442    0.7734    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9591    0.3596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1552    1.4945    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6703    1.4801    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6057    1.5005    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7802    1.5005    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1041   -0.4532    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5359    2.0228    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.1041    0.3706    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8193    0.7836    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.8193    1.6096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1041    2.0226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3887    1.6096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3887    0.7836    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0032    0.8672    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6714    0.3816    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.4162   -0.4039    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5902   -0.4039    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3350    0.3816    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5121    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5121    1.5410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2262    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9403    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6544    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3686    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0827    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7968    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5109    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2250    0.7695    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  -10.2250    1.5410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9391    0.3564    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  -10.9391   -0.4150    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6532    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3673    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.1923    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.9065    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.6206    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.3347    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.0489    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.7630    0.7695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -0.7412    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -1.5126    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2236   -0.3281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9377   -0.7412    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6518   -0.3281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3660   -0.7412    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0801   -0.3281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7942   -0.7412    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5083   -0.3281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2225   -0.7412    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9366   -0.3281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6507   -0.7412    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6507    0.0838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1 32  1  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  3  5  1  1  0  0  0
  3  6  1  0  0  0  0
  4  3  1  0  0  0  0
  6 53  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 17  1  0  0  0  0
 11 18  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  2  0  0  0  0
 14  4  1  0  0  0  0
 21 22  1  0  0  0  0
 21 19  2  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 23 20  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 21  1  0  0  0  0
 27 28  1  0  0  0  0
 27 31  1  0  0  0  0
 28 29  1  0  0  0  0
 28 26  1  1  0  0  0
 29 30  1  0  0  0  0
 29  7  1  6  0  0  0
 30 31  1  0  0  0  0
 30  8  1  6  0  0  0
 31  9  1  1  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  6  0  0  0
 41 43  1  0  0  0  0
 43 44  1  6  0  0  0
 43 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  2  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 53 54  2  0  0  0  0
 53 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 60 61  1  0  0  0  0
 61 62  1  0  0  0  0
 62 63  1  0  0  0  0
 63 64  1  0  0  0  0
 63 65  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0293314

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@](COC(=O)CCCCCCC[C@@H](O)[C@H](O)C\C=C/CCCCC)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCCCC(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C42H75N3O17P2/c1-4-5-6-7-12-17-22-33(46)34(47)23-18-13-10-15-19-24-37(48)57-28-32(60-38(49)25-20-14-9-8-11-16-21-31(2)3)29-58-63(53,54)62-64(55,56)59-30-35-39(50)40(51)41(61-35)45-27-26-36(43)44-42(45)52/h12,17,26-27,31-35,39-41,46-47,50-51H,4-11,13-16,18-25,28-30H2,1-3H3,(H,53,54)(H,55,56)(H2,43,44,52)/b17-12-/t32-,33-,34-,35-,39-,40-,41-/m1/s1

> <INCHI_KEY>
GVIMVLRSJDNENW-OWJWDUDGSA-N

> <FORMULA>
C42H75N3O17P2

> <MOLECULAR_WEIGHT>
956.014

> <EXACT_MASS>
955.457171963

> <JCHEM_ACCEPTOR_COUNT>
14

> <JCHEM_ATOM_COUNT>
139

> <JCHEM_AVERAGE_POLARIZABILITY>
100.94290890652172

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3S,4R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({[(2R)-3-{[(9R,10R,12Z)-9,10-dihydroxyoctadec-12-enoyl]oxy}-2-[(10-methylundecanoyl)oxy]propoxy](hydroxy)phosphoryl}oxy)phosphinic acid

> <ALOGPS_LOGP>
3.83

> <JCHEM_LOGP>
5.686519089333332

> <ALOGPS_LOGS>
-4.35

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
1.8631673657138115

> <JCHEM_PKA_STRONGEST_ACIDIC>
-0.0319899404417372

> <JCHEM_PKA_STRONGEST_BASIC>
3.2716255535941783

> <JCHEM_POLAR_SURFACE_AREA>
303.73

> <JCHEM_REFRACTIVITY>
235.10370000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
38

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.24e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy([(2R)-3-{[(9R,10R,12Z)-9,10-dihydroxyoctadec-12-enoyl]oxy}-2-[(10-methylundecanoyl)oxy]propoxy(hydroxy)phosphoryl]oxy)phosphinic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0293314
     RDKit          3D
CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0)
139140  0  0  0  0  0  0  0  0999 V2000
   -6.6756   -2.8951    4.2822 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9748   -2.1882    4.2996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1635   -1.0638    3.3804 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3340    0.1487    3.4653 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8609   -0.0660    3.2707 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2020    1.2735    3.2834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3029    1.6477    4.1388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7881    0.8230    5.2342 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3062    0.5411    5.1582 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0328   -0.1293    3.9922 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4469    1.7858    5.2424 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6282    2.6256    4.1845 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0131    1.3967    5.4046 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9481    2.5157    5.5124 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0554    3.4412    4.3570 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1191    4.5176    4.6692 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2276    5.4409    3.4533 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2563    6.5058    3.6585 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3926    7.3918    2.4591 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8246    6.5234    1.3066 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0043    6.1023    1.3177 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0179    6.1705    0.2614 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2830    5.3713   -0.8425 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4816    3.9317   -0.6722 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3522    3.3966    0.4046 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0550    1.9834    0.4001 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8896    1.1577    1.5692 P   0  0  0  0  0  5  0  0  0  0  0  0
    5.1450    2.1293    2.7244 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3936    0.7084    0.9777 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0255   -0.1371    2.2137 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3409   -1.1146    1.0335 P   0  0  0  0  0  5  0  0  0  0  0  0
    4.2284   -1.1799   -0.1934 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9580   -2.6418    1.5790 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8954   -0.3467    0.5278 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0802   -1.2531   -0.1434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2078   -0.6950   -0.6334 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8978   -1.7243   -1.2876 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1336   -1.0841   -1.5405 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0552   -1.9224   -2.2129 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0897   -3.2502   -2.0457 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9812   -4.0624   -2.7106 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8983   -3.5087   -3.6013 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8385   -4.2945   -4.3163 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8392   -2.1605   -3.7493 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9492   -1.4037   -3.0776 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9655   -0.1577   -3.2762 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5186   -0.6917   -0.1327 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4515    0.3272   -0.1368 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1599   -0.2229    0.4135 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2259    1.1867    0.4500 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7943    3.2655   -1.9128 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0078    2.3101   -2.4846 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9350    1.9991   -1.8692 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2998    1.5960   -3.7662 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3333    0.4521   -3.9779 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6606   -0.2286   -5.2855 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7451   -1.4215   -5.5292 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1384   -2.0224   -6.8577 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3337   -3.2348   -7.2371 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5245   -4.3198   -6.1820 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7536   -5.5621   -6.5200 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9427   -6.6377   -5.4814 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4834   -6.1969   -4.1169 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3706   -7.0721   -5.4562 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1596   -2.8218    3.3099 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0088   -2.6495    5.1451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8757   -4.0005    4.3963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1470   -1.8092    5.3598 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7828   -2.9466    4.0803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2798   -0.7963    3.4044 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0780   -1.4876    2.3172 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5270    0.7109    4.4290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6441    0.8471    2.6225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7572   -0.5670    2.2806 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4386   -0.7420    4.0038 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4991    2.0155    2.5022 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8921    2.6764    4.0499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9079    1.4328    6.2014 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3619   -0.0899    5.4549 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0227   -0.1685    5.9945 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.7605    2.3506    6.1625 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.0343    0.8089    6.3697 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2525    0.6660    4.5949 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6535    3.1005    6.4409 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9563    2.0478    5.7387 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4042    2.8488    3.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1274    3.9630    4.0650 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8329    5.0703    5.5814 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0547    3.9739    4.8779 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4413    4.8135    2.5762 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.2718    8.0727    2.6489 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4906    7.9630    2.2518 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3394    5.4829   -1.4911 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.4457    3.4943   -0.4280 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.1271    3.6859    1.4291 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8918    1.5471    0.7902 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5645   -3.0038    2.2601 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6515   -1.5871   -1.0466 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9422   -2.1783    0.4655 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0078    0.1428   -1.3106 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.4030   -3.7227   -1.3693 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.8339   -4.3593   -4.0679 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 17-SEP-21   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0)                
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-SEP-21         0                                  
HETATM    1  O   UNK     0      -7.097   0.673   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -5.781   1.440   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.447   0.670   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.113   1.440   0.000  0.00  0.00           C+0
HETATM    5  H   UNK     0      -3.677  -0.663   0.000  0.00  0.00           H+0
HETATM    6  O   UNK     0      -5.217  -0.663   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0       9.112  -2.009   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0       5.770  -1.994   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       4.894   1.462   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       3.559   0.694   0.000  0.00  0.00           O+0
HETATM   11  P   UNK     0       2.225   1.462   0.000  0.00  0.00           P+0
HETATM   12  O   UNK     0       0.890   0.694   0.000  0.00  0.00           O+0
HETATM   13  P   UNK     0      -0.456   1.444   0.000  0.00  0.00           P+0
HETATM   14  O   UNK     0      -1.790   0.671   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       0.290   2.790   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      -1.251   2.763   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       2.997   2.801   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       1.456   2.801   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0      11.394  -0.846   0.000  0.00  0.00           O+0
HETATM   20  N   UNK     0      14.067   3.776   0.000  0.00  0.00           N+0
HETATM   21  C   UNK     0      11.394   0.692   0.000  0.00  0.00           C+0
HETATM   22  N   UNK     0      12.729   1.463   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0      12.729   3.005   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      11.394   3.776   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      10.059   3.005   0.000  0.00  0.00           C+0
HETATM   26  N   UNK     0      10.059   1.463   0.000  0.00  0.00           N+0
HETATM   27  O   UNK     0       7.473   1.619   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       8.720   0.712   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       8.244  -0.754   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       6.702  -0.754   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       6.225   0.712   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -8.423   1.436   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -8.423   2.876   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      -9.756   0.665   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0     -11.089   1.436   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0     -12.422   0.665   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0     -13.755   1.436   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0     -15.088   0.665   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0     -16.421   1.436   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0     -17.754   0.665   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0     -19.087   1.436   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0     -19.087   2.876   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0     -20.420   0.665   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0     -20.420  -0.775   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0     -21.753   1.436   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0     -23.086   0.665   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0     -24.626   0.665   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0     -25.959   1.436   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0     -27.292   0.665   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0     -28.625   1.436   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0     -29.958   0.665   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0     -31.291   1.436   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      -6.551  -1.383   0.000  0.00  0.00           C+0
HETATM   54  O   UNK     0      -6.551  -2.823   0.000  0.00  0.00           O+0
HETATM   55  C   UNK     0      -7.884  -0.612   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      -9.217  -1.383   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0     -10.550  -0.612   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0     -11.883  -1.383   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0     -13.216  -0.612   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0     -14.549  -1.383   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0     -15.882  -0.612   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0     -17.215  -1.383   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0     -18.548  -0.612   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0     -19.881  -1.383   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0     -19.881   0.156   0.000  0.00  0.00           C+0
CONECT    1   32    2                                                       
CONECT    2    1    3                                                       
CONECT    3    2    5    6    4                                             
CONECT    4    3   14                                                       
CONECT    5    3                                                            
CONECT    6    3   53                                                       
CONECT    7   29                                                            
CONECT    8   30                                                            
CONECT    9   10   31                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   17   18                                             
CONECT   12   11   13                                                       
CONECT   13   12   14   15   16                                             
CONECT   14   13    4                                                       
CONECT   15   13                                                            
CONECT   16   13                                                            
CONECT   17   11                                                            
CONECT   18   11                                                            
CONECT   19   21                                                            
CONECT   20   23                                                            
CONECT   21   22   19   26                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   20                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   21   28                                                  
CONECT   27   28   31                                                       
CONECT   28   27   29   26                                                  
CONECT   29   28   30    7                                                  
CONECT   30   29   31    8                                                  
CONECT   31   27   30    9                                                  
CONECT   32    1   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41   44   45                                                  
CONECT   44   43                                                            
CONECT   45   43   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51                                                            
CONECT   53    6   54   55                                                  
CONECT   54   53                                                            
CONECT   55   53   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62                                                       
CONECT   62   61   63                                                       
CONECT   63   62   64   65                                                  
CONECT   64   63                                                            
CONECT   65   63                                                            
MASTER        0    0    0    0    0    0    0    0   65    0  132    0
END

COMPND    HMDB0293314
HETATM    1  C1  UNL     1      -6.676  -2.895   4.282  1.00  0.00           C  
HETATM    2  C2  UNL     1      -7.975  -2.188   4.300  1.00  0.00           C  
HETATM    3  C3  UNL     1      -8.164  -1.064   3.380  1.00  0.00           C  
HETATM    4  C4  UNL     1      -7.334   0.149   3.465  1.00  0.00           C  
HETATM    5  C5  UNL     1      -5.861  -0.066   3.271  1.00  0.00           C  
HETATM    6  C6  UNL     1      -5.202   1.273   3.283  1.00  0.00           C  
HETATM    7  C7  UNL     1      -4.303   1.648   4.139  1.00  0.00           C  
HETATM    8  C8  UNL     1      -3.788   0.823   5.234  1.00  0.00           C  
HETATM    9  C9  UNL     1      -2.306   0.541   5.158  1.00  0.00           C  
HETATM   10  O1  UNL     1      -2.033  -0.129   3.992  1.00  0.00           O  
HETATM   11  C10 UNL     1      -1.447   1.786   5.242  1.00  0.00           C  
HETATM   12  O2  UNL     1      -1.628   2.626   4.185  1.00  0.00           O  
HETATM   13  C11 UNL     1      -0.013   1.397   5.405  1.00  0.00           C  
HETATM   14  C12 UNL     1       0.948   2.516   5.512  1.00  0.00           C  
HETATM   15  C13 UNL     1       1.055   3.441   4.357  1.00  0.00           C  
HETATM   16  C14 UNL     1       2.119   4.518   4.669  1.00  0.00           C  
HETATM   17  C15 UNL     1       2.228   5.441   3.453  1.00  0.00           C  
HETATM   18  C16 UNL     1       3.256   6.506   3.659  1.00  0.00           C  
HETATM   19  C17 UNL     1       3.393   7.392   2.459  1.00  0.00           C  
HETATM   20  C18 UNL     1       3.825   6.523   1.307  1.00  0.00           C  
HETATM   21  O3  UNL     1       5.004   6.102   1.318  1.00  0.00           O  
HETATM   22  O4  UNL     1       3.018   6.170   0.261  1.00  0.00           O  
HETATM   23  C19 UNL     1       3.283   5.371  -0.842  1.00  0.00           C  
HETATM   24  C20 UNL     1       3.482   3.932  -0.672  1.00  0.00           C  
HETATM   25  C21 UNL     1       4.352   3.397   0.405  1.00  0.00           C  
HETATM   26  O5  UNL     1       4.055   1.983   0.400  1.00  0.00           O  
HETATM   27  P1  UNL     1       4.890   1.158   1.569  1.00  0.00           P  
HETATM   28  O6  UNL     1       5.145   2.129   2.724  1.00  0.00           O  
HETATM   29  O7  UNL     1       6.394   0.708   0.978  1.00  0.00           O  
HETATM   30  O8  UNL     1       4.025  -0.137   2.214  1.00  0.00           O  
HETATM   31  P2  UNL     1       3.341  -1.115   1.034  1.00  0.00           P  
HETATM   32  O9  UNL     1       4.228  -1.180  -0.193  1.00  0.00           O  
HETATM   33  O10 UNL     1       2.958  -2.642   1.579  1.00  0.00           O  
HETATM   34  O11 UNL     1       1.895  -0.347   0.528  1.00  0.00           O  
HETATM   35  C22 UNL     1       1.080  -1.253  -0.143  1.00  0.00           C  
HETATM   36  C23 UNL     1      -0.208  -0.695  -0.633  1.00  0.00           C  
HETATM   37  O12 UNL     1      -0.898  -1.724  -1.288  1.00  0.00           O  
HETATM   38  C24 UNL     1      -2.134  -1.084  -1.541  1.00  0.00           C  
HETATM   39  N1  UNL     1      -3.055  -1.922  -2.213  1.00  0.00           N  
HETATM   40  C25 UNL     1      -3.090  -3.250  -2.046  1.00  0.00           C  
HETATM   41  C26 UNL     1      -3.981  -4.062  -2.711  1.00  0.00           C  
HETATM   42  C27 UNL     1      -4.898  -3.509  -3.601  1.00  0.00           C  
HETATM   43  N2  UNL     1      -5.838  -4.294  -4.316  1.00  0.00           N  
HETATM   44  N3  UNL     1      -4.839  -2.160  -3.749  1.00  0.00           N  
HETATM   45  C28 UNL     1      -3.949  -1.404  -3.078  1.00  0.00           C  
HETATM   46  O13 UNL     1      -3.966  -0.158  -3.276  1.00  0.00           O  
HETATM   47  C29 UNL     1      -2.519  -0.692  -0.133  1.00  0.00           C  
HETATM   48  O14 UNL     1      -3.451   0.327  -0.137  1.00  0.00           O  
HETATM   49  C30 UNL     1      -1.160  -0.223   0.414  1.00  0.00           C  
HETATM   50  O15 UNL     1      -1.226   1.187   0.450  1.00  0.00           O  
HETATM   51  O16 UNL     1       3.794   3.265  -1.913  1.00  0.00           O  
HETATM   52  C31 UNL     1       3.008   2.310  -2.485  1.00  0.00           C  
HETATM   53  O17 UNL     1       1.935   1.999  -1.869  1.00  0.00           O  
HETATM   54  C32 UNL     1       3.300   1.596  -3.766  1.00  0.00           C  
HETATM   55  C33 UNL     1       2.333   0.452  -3.978  1.00  0.00           C  
HETATM   56  C34 UNL     1       2.661  -0.229  -5.285  1.00  0.00           C  
HETATM   57  C35 UNL     1       1.745  -1.421  -5.529  1.00  0.00           C  
HETATM   58  C36 UNL     1       2.138  -2.022  -6.858  1.00  0.00           C  
HETATM   59  C37 UNL     1       1.334  -3.235  -7.237  1.00  0.00           C  
HETATM   60  C38 UNL     1       1.525  -4.320  -6.182  1.00  0.00           C  
HETATM   61  C39 UNL     1       0.754  -5.562  -6.520  1.00  0.00           C  
HETATM   62  C40 UNL     1       0.943  -6.638  -5.481  1.00  0.00           C  
HETATM   63  C41 UNL     1       0.483  -6.197  -4.117  1.00  0.00           C  
HETATM   64  C42 UNL     1       2.371  -7.072  -5.456  1.00  0.00           C  
HETATM   65  H1  UNL     1      -6.160  -2.822   3.310  1.00  0.00           H  
HETATM   66  H2  UNL     1      -6.009  -2.649   5.145  1.00  0.00           H  
HETATM   67  H3  UNL     1      -6.876  -4.001   4.396  1.00  0.00           H  
HETATM   68  H4  UNL     1      -8.147  -1.809   5.360  1.00  0.00           H  
HETATM   69  H5  UNL     1      -8.783  -2.947   4.080  1.00  0.00           H  
HETATM   70  H6  UNL     1      -9.280  -0.796   3.404  1.00  0.00           H  
HETATM   71  H7  UNL     1      -8.078  -1.488   2.317  1.00  0.00           H  
HETATM   72  H8  UNL     1      -7.527   0.711   4.429  1.00  0.00           H  
HETATM   73  H9  UNL     1      -7.644   0.847   2.622  1.00  0.00           H  
HETATM   74  H10 UNL     1      -5.757  -0.567   2.281  1.00  0.00           H  
HETATM   75  H11 UNL     1      -5.439  -0.742   4.004  1.00  0.00           H  
HETATM   76  H12 UNL     1      -5.499   2.015   2.502  1.00  0.00           H  
HETATM   77  H13 UNL     1      -3.892   2.676   4.050  1.00  0.00           H  
HETATM   78  H14 UNL     1      -3.908   1.433   6.201  1.00  0.00           H  
HETATM   79  H15 UNL     1      -4.362  -0.090   5.455  1.00  0.00           H  
HETATM   80  H16 UNL     1      -2.023  -0.169   5.995  1.00  0.00           H  
HETATM   81  H17 UNL     1      -1.200  -0.653   3.982  1.00  0.00           H  
HETATM   82  H18 UNL     1      -1.761   2.351   6.163  1.00  0.00           H  
HETATM   83  H19 UNL     1      -1.517   2.235   3.300  1.00  0.00           H  
HETATM   84  H20 UNL     1       0.034   0.809   6.370  1.00  0.00           H  
HETATM   85  H21 UNL     1       0.253   0.666   4.595  1.00  0.00           H  
HETATM   86  H22 UNL     1       0.653   3.101   6.441  1.00  0.00           H  
HETATM   87  H23 UNL     1       1.956   2.048   5.739  1.00  0.00           H  
HETATM   88  H24 UNL     1       1.404   2.849   3.471  1.00  0.00           H  
HETATM   89  H25 UNL     1       0.127   3.963   4.065  1.00  0.00           H  
HETATM   90  H26 UNL     1       1.833   5.070   5.581  1.00  0.00           H  
HETATM   91  H27 UNL     1       3.055   3.974   4.878  1.00  0.00           H  
HETATM   92  H28 UNL     1       2.441   4.813   2.576  1.00  0.00           H  
HETATM   93  H29 UNL     1       1.228   5.934   3.372  1.00  0.00           H  
HETATM   94  H30 UNL     1       2.998   7.054   4.588  1.00  0.00           H  
HETATM   95  H31 UNL     1       4.273   6.065   3.856  1.00  0.00           H  
HETATM   96  H32 UNL     1       4.272   8.073   2.649  1.00  0.00           H  
HETATM   97  H33 UNL     1       2.491   7.963   2.252  1.00  0.00           H  
HETATM   98  H34 UNL     1       2.339   5.483  -1.491  1.00  0.00           H  
HETATM   99  H35 UNL     1       4.057   5.846  -1.521  1.00  0.00           H  
HETATM  100  H36 UNL     1       2.446   3.494  -0.428  1.00  0.00           H  
HETATM  101  H37 UNL     1       5.415   3.433   0.106  1.00  0.00           H  
HETATM  102  H38 UNL     1       4.127   3.686   1.429  1.00  0.00           H  
HETATM  103  H39 UNL     1       6.892   1.547   0.790  1.00  0.00           H  
HETATM  104  H40 UNL     1       3.564  -3.004   2.260  1.00  0.00           H  
HETATM  105  H41 UNL     1       1.652  -1.587  -1.047  1.00  0.00           H  
HETATM  106  H42 UNL     1       0.942  -2.178   0.465  1.00  0.00           H  
HETATM  107  H43 UNL     1       0.008   0.143  -1.311  1.00  0.00           H  
HETATM  108  H44 UNL     1      -1.939  -0.126  -2.097  1.00  0.00           H  
HETATM  109  H45 UNL     1      -2.403  -3.723  -1.369  1.00  0.00           H  
HETATM  110  H46 UNL     1      -4.031  -5.143  -2.598  1.00  0.00           H  
HETATM  111  H47 UNL     1      -6.834  -4.359  -4.068  1.00  0.00           H  
HETATM  112  H48 UNL     1      -5.538  -4.861  -5.155  1.00  0.00           H  
HETATM  113  H49 UNL     1      -2.860  -1.545   0.468  1.00  0.00           H  
HETATM  114  H50 UNL     1      -3.146   1.135   0.346  1.00  0.00           H  
HETATM  115  H51 UNL     1      -0.975  -0.600   1.416  1.00  0.00           H  
HETATM  116  H52 UNL     1      -1.193   1.488  -0.509  1.00  0.00           H  
HETATM  117  H53 UNL     1       3.209   2.311  -4.607  1.00  0.00           H  
HETATM  118  H54 UNL     1       4.346   1.217  -3.799  1.00  0.00           H  
HETATM  119  H55 UNL     1       2.347  -0.260  -3.126  1.00  0.00           H  
HETATM  120  H56 UNL     1       1.299   0.846  -4.055  1.00  0.00           H  
HETATM  121  H57 UNL     1       2.617   0.479  -6.135  1.00  0.00           H  
HETATM  122  H58 UNL     1       3.699  -0.627  -5.286  1.00  0.00           H  
HETATM  123  H59 UNL     1       0.723  -1.046  -5.589  1.00  0.00           H  
HETATM  124  H60 UNL     1       1.902  -2.139  -4.700  1.00  0.00           H  
HETATM  125  H61 UNL     1       1.925  -1.215  -7.619  1.00  0.00           H  
HETATM  126  H62 UNL     1       3.228  -2.228  -6.910  1.00  0.00           H  
HETATM  127  H63 UNL     1       1.721  -3.649  -8.189  1.00  0.00           H  
HETATM  128  H64 UNL     1       0.260  -3.037  -7.301  1.00  0.00           H  
HETATM  129  H65 UNL     1       2.593  -4.564  -6.145  1.00  0.00           H  
HETATM  130  H66 UNL     1       1.106  -3.919  -5.234  1.00  0.00           H  
HETATM  131  H67 UNL     1      -0.354  -5.334  -6.539  1.00  0.00           H  
HETATM  132  H68 UNL     1       0.985  -5.911  -7.539  1.00  0.00           H  
HETATM  133  H69 UNL     1       0.315  -7.541  -5.734  1.00  0.00           H  
HETATM  134  H70 UNL     1       0.442  -7.098  -3.439  1.00  0.00           H  
HETATM  135  H71 UNL     1       1.211  -5.498  -3.680  1.00  0.00           H  
HETATM  136  H72 UNL     1      -0.557  -5.816  -4.128  1.00  0.00           H  
HETATM  137  H73 UNL     1       3.046  -6.260  -5.127  1.00  0.00           H  
HETATM  138  H74 UNL     1       2.692  -7.392  -6.485  1.00  0.00           H  
HETATM  139  H75 UNL     1       2.520  -7.978  -4.811  1.00  0.00           H  
CONECT    1    2   65   66   67
CONECT    2    3   68   69
CONECT    3    4   70   71
CONECT    4    5   72   73
CONECT    5    6   74   75
CONECT    6    7    7   76
CONECT    7    8   77
CONECT    8    9   78   79
CONECT    9   10   11   80
CONECT   10   81
CONECT   11   12   13   82
CONECT   12   83
CONECT   13   14   84   85
CONECT   14   15   86   87
CONECT   15   16   88   89
CONECT   16   17   90   91
CONECT   17   18   92   93
CONECT   18   19   94   95
CONECT   19   20   96   97
CONECT   20   21   21   22
CONECT   22   23
CONECT   23   24   98   99
CONECT   24   25   51  100
CONECT   25   26  101  102
CONECT   26   27
CONECT   27   28   28   29   30
CONECT   29  103
CONECT   30   31
CONECT   31   32   32   33   34
CONECT   33  104
CONECT   34   35
CONECT   35   36  105  106
CONECT   36   37   49  107
CONECT   37   38
CONECT   38   39   47  108
CONECT   39   40   45
CONECT   40   41   41  109
CONECT   41   42  110
CONECT   42   43   44   44
CONECT   43  111  112
CONECT   44   45
CONECT   45   46   46
CONECT   47   48   49  113
CONECT   48  114
CONECT   49   50  115
CONECT   50  116
CONECT   51   52
CONECT   52   53   53   54
CONECT   54   55  117  118
CONECT   55   56  119  120
CONECT   56   57  121  122
CONECT   57   58  123  124
CONECT   58   59  125  126
CONECT   59   60  127  128
CONECT   60   61  129  130
CONECT   61   62  131  132
CONECT   62   63   64  133
CONECT   63  134  135  136
CONECT   64  137  138  139
END

HMDB0293314
     RDKit          3D
CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0)
139140  0  0  0  0  0  0  0  0999 V2000
   -6.6756   -2.8951    4.2822 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9748   -2.1882    4.2996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1635   -1.0638    3.3804 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3340    0.1487    3.4653 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8609   -0.0660    3.2707 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2020    1.2735    3.2834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3029    1.6477    4.1388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7881    0.8230    5.2342 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3062    0.5411    5.1582 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0328   -0.1293    3.9922 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4469    1.7858    5.2424 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6282    2.6256    4.1845 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0131    1.3967    5.4046 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9481    2.5157    5.5124 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0554    3.4412    4.3570 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1191    4.5176    4.6692 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2276    5.4409    3.4533 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2563    6.5058    3.6585 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3926    7.3918    2.4591 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8246    6.5234    1.3066 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0043    6.1023    1.3177 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0179    6.1705    0.2614 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2830    5.3713   -0.8425 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4816    3.9317   -0.6722 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3522    3.3966    0.4046 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0550    1.9834    0.4001 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8896    1.1577    1.5692 P   0  0  0  0  0  5  0  0  0  0  0  0
    5.1450    2.1293    2.7244 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3936    0.7084    0.9777 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0255   -0.1371    2.2137 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3409   -1.1146    1.0335 P   0  0  0  0  0  5  0  0  0  0  0  0
    4.2284   -1.1799   -0.1934 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9580   -2.6418    1.5790 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8954   -0.3467    0.5278 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0802   -1.2531   -0.1434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2078   -0.6950   -0.6334 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8978   -1.7243   -1.2876 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1336   -1.0841   -1.5405 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0552   -1.9224   -2.2129 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0897   -3.2502   -2.0457 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9812   -4.0624   -2.7106 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8983   -3.5087   -3.6013 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8385   -4.2945   -4.3163 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8392   -2.1605   -3.7493 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9492   -1.4037   -3.0776 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.5186   -0.6917   -0.1327 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4515    0.3272   -0.1368 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1599   -0.2229    0.4135 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2259    1.1867    0.4500 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.5245   -4.3198   -6.1820 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7536   -5.5621   -6.5200 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9427   -6.6377   -5.4814 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.3706   -7.0721   -5.4562 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1596   -2.8218    3.3099 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0088   -2.6495    5.1451 H   0  0  0  0  0  0  0  0  0  0  0  0
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 36107  1  6
 38108  1  6
 40109  1  0
 41110  1  0
 43111  1  0
 43112  1  0
 47113  1  1
 48114  1  0
 49115  1  1
 50116  1  0
 54117  1  0
 54118  1  0
 55119  1  0
 55120  1  0
 56121  1  0
 56122  1  0
 57123  1  0
 57124  1  0
 58125  1  0
 58126  1  0
 59127  1  0
 59128  1  0
 60129  1  0
 60130  1  0
 61131  1  0
 61132  1  0
 62133  1  0
 63134  1  0
 63135  1  0
 63136  1  0
 64137  1  0
 64138  1  0
 64139  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
{[(2R,3S,4R,5R)-3,4-dihydroxy-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-2-yl]methoxy}({[(2R)-3-{[(9R,10R,12Z)-9,10-dihydroxyoctadec-12-enoyl]oxy}-2-[(10-methylundecanoyl)oxy]propoxy](hydroxy)phosphoryl}oxy)phosphinate	Generator

Chemical Formula

C₄₂H₇₅N₃O₁₇P₂

Average Molecular Weight

956.014

Monoisotopic Molecular Weight

955.457171963

IUPAC Name

{[(2R,3S,4R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({[(2R)-3-{[(9R,10R,12Z)-9,10-dihydroxyoctadec-12-enoyl]oxy}-2-[(10-methylundecanoyl)oxy]propoxy](hydroxy)phosphoryl}oxy)phosphinic acid

Traditional Name

[(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy([(2R)-3-{[(9R,10R,12Z)-9,10-dihydroxyoctadec-12-enoyl]oxy}-2-[(10-methylundecanoyl)oxy]propoxy(hydroxy)phosphoryl]oxy)phosphinic acid

CAS Registry Number

Not Available

SMILES

[H][C@@](COC(=O)CCCCCCC[C@@H](O)[C@H](O)C\C=C/CCCCC)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCCCC(C)C

InChI Identifier

InChI=1S/C42H75N3O17P2/c1-4-5-6-7-12-17-22-33(46)34(47)23-18-13-10-15-19-24-37(48)57-28-32(60-38(49)25-20-14-9-8-11-16-21-31(2)3)29-58-63(53,54)62-64(55,56)59-30-35-39(50)40(51)41(61-35)45-27-26-36(43)44-42(45)52/h12,17,26-27,31-35,39-41,46-47,50-51H,4-11,13-16,18-25,28-30H2,1-3H3,(H,53,54)(H,55,56)(H2,43,44,52)/b17-12-/t32-,33-,34-,35-,39-,40-,41-/m1/s1

InChI Key

GVIMVLRSJDNENW-OWJWDUDGSA-N

Chemical Taxonomy

Classification

Not classified

Ontology

Not Available

Not Available

Not Available

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	3.83	ALOGPS
logP	5.69	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Acidic)	-0.032	ChemAxon
pKa (Strongest Basic)	3.27	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	14	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	303.73 Å²	ChemAxon
Rotatable Bond Count	38	ChemAxon
Refractivity	235.1 m³·mol⁻¹	ChemAxon
Polarizability	100.94 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	297.365	32859911
AllCCS	[M+H-H2O]+	297.758	32859911
AllCCS	[M+Na]+	296.84	32859911
AllCCS	[M+NH4]+	296.962	32859911
AllCCS	[M-H]-	299.751	32859911
AllCCS	[M+Na-2H]-	306.401	32859911
AllCCS	[M+HCOO]-	313.672	32859911
DeepCCS	[M+H]+	278.172	30932474
DeepCCS	[M-H]-	276.448	30932474
DeepCCS	[M-2H]-	310.604	30932474
DeepCCS	[M+Na]+	285.527	30932474

Predicted Kovats Retention Indices

Not Available

Spectra

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Hajeyah AA, Griffiths WJ, Wang Y, Finch AJ, O'Donnell VB: The Biosynthesis of Enzymatically Oxidized Lipids. Front Endocrinol (Lausanne). 2020 Nov 19;11:591819. doi: 10.3389/fendo.2020.591819. eCollection 2020. [PubMed:33329396 ]

Showing metabocard for CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0) (HMDB0293314)

MOL for HMDB0293314 (CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0))

3D MOL for HMDB0293314 (CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0))

3D SDF for HMDB0293314 (CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0))

3D-SDF for HMDB0293314 (CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0))

PDB for HMDB0293314 (CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0))

3D PDB for HMDB0293314 (CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0))

SMILES for HMDB0293314 (CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0))

INCHI for HMDB0293314 (CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0))

Structure for HMDB0293314 (CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0))

3D Structure for HMDB0293314 (CDP-DG(18:1(12Z)-2OH(9,10)/i-12:0))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices