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Showing metabocard for CDP-DG(i-14:0/PGE1) (HMDB0293558)

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Record Information
Version5.0
StatusPredicted
Creation Date2021-09-17 15:27:17 UTC
Update Date2022-11-30 20:08:38 UTC
HMDB IDHMDB0293558
Secondary Accession NumbersNone
Metabolite Identification
Common NameCDP-DG(i-14:0/PGE1)
DescriptionCDP-DG(i-14:0/PGE1) is an oxidized CDP-diacylglycerol (CDP-DG). Oxidized CDP-diacylglycerols are glycerophospholipids in which a cytidine diphosphate moiety occupies a glycerol substitution site and at least one of the fatty acyl chains has undergone oxidation. As all oxidized lipids, oxidized CDP-diacylglycerols belong to a group of biomolecules that have a role as signaling molecules. The biosynthesis of oxidized lipids is mediated by several enzymatic families, including cyclooxygenases (COX), lipoxygenases (LOX) and cytochrome P450s (CYP). Non-enzymatically oxidized lipids are produced by uncontrolled oxidation through free radicals and are considered harmful to human health (PMID: 33329396 ). As is the case with diacylglycerols, CDP-diacylglycerols can have many different combinations of fatty acids of varying lengths, saturation and degrees of oxidation attached at the C-1 and C-2 positions. CDP-DG(i-14:0/PGE1), in particular, consists of one chain of one 12-methyltridecanoyl at the C-1 position and one chain of Prostaglandin E1 at the C-2 position. Phospholipids are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. Similarly to what occurs with phospholipids, the fatty acid distribution at the C-1 and C-2 positions of glycerol within oxidized phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. Oxidized CDP-DGs can be synthesized via three different routes. In one route, the oxidized CDP-DG is synthetized de novo following the same mechanisms as for CDP-DGs but incorporating oxidized acyl chains (PMID: 33329396 ). An alternative is the transacylation of one of the non-oxidized acyl chains with an oxidized acylCoA (PMID: 33329396 ). The third pathway results from the oxidation of the acyl chain while still attached to the CDP-DG backbone, mainly through the action of LOX (PMID: 33329396 ).
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0293558 (CDP-DG(i-14:0/PGE1))


  Mrv1652309172117272D          

 69 71  0  0  1  0            999 V2000
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M  END
Download

3D MOL for HMDB0293558 (CDP-DG(i-14:0/PGE1))

HMDB0293558
     RDKit          3D
CDP-DG(i-14:0/PGE1)
148150  0  0  0  0  0  0  0  0999 V2000
  -14.1228   -2.8302   -2.7620 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6265   -3.0823   -2.9919 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8971   -2.4921   -1.8071 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3972   -2.6661   -1.8961 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7736   -2.0302   -3.0917 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0118   -0.5521   -3.1251 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -5.9768    2.0283    5.7250 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2040    2.2972    7.0892 N   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.4909    0.1090    1.3741 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0293558 (CDP-DG(i-14:0/PGE1))


  Mrv1652309172117272D          

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 68 69  1  1  0  0  0
M  END
> <DATABASE_ID>
HMDB0293558

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCC[C@H](O)\C=C/[C@H]1[C@H](O)CC(=O)[C@@H]2CCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCC(C)C)COP(O)(=O)OP(O)(=O)OC[C@@H](O[C@H]2N2C=CC(N)=NC2=O)[C@@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C46H79N3O18P2/c1-4-5-14-20-33(50)24-25-35-37(51)28-38(52)36-21-16-12-13-18-23-42(54)65-34(29-62-41(53)22-17-11-9-7-6-8-10-15-19-32(2)3)30-63-68(58,59)67-69(60,61)64-31-39(44(56)43(35)55)66-45(36)49-27-26-40(47)48-46(49)57/h24-27,32-37,39,43-45,50-51,55-56H,4-23,28-31H2,1-3H3,(H,58,59)(H,60,61)(H2,47,48,57)/b25-24-/t33-,34+,35-,36-,37+,39+,43?,44+,45+/m0/s1

> <INCHI_KEY>
ZTWIORLTSUWLFF-RGKKMIGPSA-N

> <FORMULA>
C46H79N3O18P2

> <MOLECULAR_WEIGHT>
1024.089

> <EXACT_MASS>
1023.483386712

> <JCHEM_ACCEPTOR_COUNT>
15

> <JCHEM_ATOM_COUNT>
148

> <JCHEM_AVERAGE_POLARIZABILITY>
107.54405920356223

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(1R,9R,18R,21R,22S,23S,24S,26R)-26-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-4,6,21,23,24-pentahydroxy-22-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-4,6,11,19-tetraoxo-3,5,7,10,25-pentaoxa-4lambda5,6lambda5-diphosphabicyclo[16.6.2]hexacosan-9-yl]methyl 12-methyltridecanoate

> <ALOGPS_LOGP>
2.63

> <JCHEM_LOGP>
5.585443679528372

> <ALOGPS_LOGS>
-3.61

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
3.271929066269361

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8703864971683677

> <JCHEM_PKA_STRONGEST_BASIC>
0.3264419541517841

> <JCHEM_POLAR_SURFACE_AREA>
320.8

> <JCHEM_REFRACTIVITY>
252.2462000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
21

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.49e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(1R,9R,18R,21R,22S,23S,24S,26R)-26-(4-amino-2-oxopyrimidin-1-yl)-4,6,21,23,24-pentahydroxy-22-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-4,6,11,19-tetraoxo-3,5,7,10,25-pentaoxa-4lambda5,6lambda5-diphosphabicyclo[16.6.2]hexacosan-9-yl]methyl 12-methyltridecanoate

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0293558 (CDP-DG(i-14:0/PGE1))

HMDB0293558
     RDKit          3D
CDP-DG(i-14:0/PGE1)
148150  0  0  0  0  0  0  0  0999 V2000
  -14.1228   -2.8302   -2.7620 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6265   -3.0823   -2.9919 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8971   -2.4921   -1.8071 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3972   -2.6661   -1.8961 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7736   -2.0302   -3.0917 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0118   -0.5521   -3.1251 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.4485    0.0938   -4.2213 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9550    0.1584   -1.8554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8289    0.4713   -1.2428 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5112    0.1253   -1.7948 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.8068   -0.9560   -1.0841 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.5987   -1.2249    0.0758 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4279   -0.8650   -0.6414 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7134   -1.9659   -1.2037 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2017   -1.0065    0.8708 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3459   -2.2081    1.2100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5832   -2.0721    2.3415 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9526   -1.9099    1.9336 P   0  0  0  0  0  5  0  0  0  0  0  0
   -1.3794   -0.6096    2.4354 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8022   -1.9602    0.2518 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0346   -3.1400    2.6447 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5873   -2.6749    2.7944 P   0  0  0  0  0  5  0  0  0  0  0  0
    1.4190   -3.9313    2.8421 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7318   -1.8637    4.2657 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0812   -1.6202    1.5791 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8543   -0.5721    2.0706 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0037   -0.1851    1.1973 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.3169   -0.5851    1.8797 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4329   -0.1359    1.0966 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7130   -0.3483    1.5237 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9048   -0.9476    2.6144 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9458    0.0887    0.7790 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3324    1.4672    1.1537 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5451    2.0689    0.5841 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6643    2.2748   -0.8647 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6357    1.1691   -1.8143 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5459    0.0247   -1.7467 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0084    0.1824   -1.8614 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6565    0.9508   -0.7728 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1538    1.0463   -0.9375 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.9172   -0.2135   -0.9084 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.9324   -1.0188    0.3334 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8237   -2.2500    0.0287 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.6556   -1.5529    0.8580 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9405   -0.7870   -0.0424 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0913   -0.5988   -1.0917 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4176   -1.6026   -1.5129 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8958    0.6786   -1.7753 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1133    1.7139   -1.0555 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3344    1.8416   -1.4972 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2126    1.7410   -0.3030 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6220    2.3206   -0.5084 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2631    2.2827    0.8653 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7564    2.3881    0.8796 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.3625    2.7286   -0.4040 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7128    3.3802   -1.2072 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7349    2.3597   -0.8620 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7642    1.4168   -2.0243 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.5345    1.2526   -2.6627 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3368    1.1934    1.5918 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.5395    1.4828    2.9952 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5601    1.8944    3.8062 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7297    2.1704    5.1391 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9768    2.0283    5.7250 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2040    2.2972    7.0892 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9720    1.6081    4.8918 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7635    1.3480    3.5906 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7578    0.9644    2.9118 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4909    0.1090    1.3741 O   0  0  0  0  0  0  0  0  0  0  0  0
  -14.7179   -2.9697   -3.6645 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2555   -1.7619   -2.4564 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.4581   -3.4237   -1.8944 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5209   -4.2009   -3.0346 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3080   -2.6775   -3.9613 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2218   -1.4488   -1.7226 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2221   -3.0684   -0.9145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8932   -2.4296   -0.9454 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2416   -3.7813   -2.0141 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2820   -2.5086   -3.9874 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -11.1219   -0.5087   -3.4295 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8473    0.9957   -4.2947 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8895    0.4843   -1.3229 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9488    1.0071   -0.2812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6854   -0.2693   -2.8400 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.2021   -0.8117    3.1170 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.0770    0.9363    1.1455 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3532   -0.0207    2.8251 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3533   -1.6529    2.0841 H   0  0  0  0  0  0  0  0  0  0  0  0
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    8.7789   -0.6043    0.9639 H   0  0  0  0  0  0  0  0  0  0  0  0
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    7.4574    2.1710    0.9181 H   0  0  0  0  0  0  0  0  0  0  0  0
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 41 42  1  0
 42 43  1  0
 42 44  1  0
 27 45  1  0
 45 46  1  0
 46 47  2  0
 46 48  1  0
 48 49  1  0
 49 50  1  0
 50 51  1  0
 51 52  1  0
 52 53  1  0
 53 54  1  0
 54 55  1  0
 55 56  2  0
 55 57  1  0
 57 58  1  0
 58 59  1  0
 54 60  1  0
 60 61  1  0
 61 62  1  0
 62 63  2  0
 63 64  1  0
 64 65  1  0
 64 66  2  0
 66 67  1  0
 67 68  2  0
 60 69  1  0
 58 10  1  0
 67 61  1  0
 69 15  1  0
  1 70  1  0
  1 71  1  0
  1 72  1  0
  2 73  1  0
  2 74  1  0
  3 75  1  0
  3 76  1  0
  4 77  1  0
  4 78  1  0
  5 79  1  0
  5 80  1  0
  6 81  1  6
  7 82  1  0
  8 83  1  0
  9 84  1  0
 10 85  1  6
 11 86  1  6
 12 87  1  0
 13 88  1  6
 14 89  1  0
 15 90  1  1
 16 91  1  0
 16 92  1  0
 20 93  1  0
 24 94  1  0
 26 95  1  0
 26 96  1  0
 27 97  1  6
 28 98  1  0
 28 99  1  0
 32100  1  0
 32101  1  0
 33102  1  0
 33103  1  0
 34104  1  0
 34105  1  0
 35106  1  0
 35107  1  0
 36108  1  0
 36109  1  0
 37110  1  0
 37111  1  0
 38112  1  0
 38113  1  0
 39114  1  0
 39115  1  0
 40116  1  0
 40117  1  0
 41118  1  0
 41119  1  0
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 51134  1  0
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 54139  1  1
 57140  1  0
 57141  1  0
 58142  1  6
 59143  1  0
 60144  1  6
 62145  1  0
 63146  1  0
 65147  1  0
 65148  1  0
M  END
Download

PDB for HMDB0293558 (CDP-DG(i-14:0/PGE1))

HEADER    PROTEIN                                 17-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-SEP-21         0                                  
HETATM    1  N   UNK     0      -4.837  -4.297   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0      -3.450  -3.501   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0      -3.571  -1.966   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0      -2.303  -1.093   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -3.371   0.115   0.000  0.00  0.00           O+0
HETATM    6  N   UNK     0      -0.912  -1.755   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0      -0.791  -3.290   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.059  -4.163   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.356  -0.882   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -0.372   0.546   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.104   2.088   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.737   3.583   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.156   4.414   0.000  0.00  0.00           O+0
HETATM   14  P   UNK     0       3.716   4.969   0.000  0.00  0.00           P+0
HETATM   15  O   UNK     0       2.567   6.183   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       4.059   6.606   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       5.311   4.591   0.000  0.00  0.00           O+0
HETATM   18  P   UNK     0       6.732   3.761   0.000  0.00  0.00           P+0
HETATM   19  O   UNK     0       6.656   5.477   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       7.888   5.131   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       8.442   3.094   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       9.776   2.608   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      11.126   1.739   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      12.722   2.123   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      14.295   1.900   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      15.509   2.931   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      15.444   4.530   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      16.671   1.833   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      18.013   2.635   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      19.320   1.775   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      20.586   2.701   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      21.912   1.862   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      23.229   2.720   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      24.597   1.944   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      25.954   2.745   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      27.403   2.134   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      28.831   2.815   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      30.139   1.900   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      31.484   2.717   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      30.268   0.319   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      11.251   0.140   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      10.550  -1.315   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      11.757  -2.413   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0       9.713  -2.684   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       8.316  -3.483   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0       6.796  -4.048   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0       5.185  -4.187   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0       3.583  -4.364   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0       2.220  -3.499   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0       1.437  -2.081   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0       2.849  -1.388   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0       3.618  -0.087   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0       4.365  -0.997   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0       5.625  -0.074   0.000  0.00  0.00           C+0
HETATM   55  O   UNK     0       6.981  -0.883   0.000  0.00  0.00           O+0
HETATM   56  C   UNK     0       4.819   1.263   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0       6.389   1.424   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0       7.339   2.652   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0       8.085   4.259   0.000  0.00  0.00           C+0
HETATM   60  O   UNK     0       9.605   4.086   0.000  0.00  0.00           O+0
HETATM   61  C   UNK     0       7.928   6.209   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0       8.774   7.720   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0       8.405   9.302   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0       9.239  10.619   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0       8.523  11.983   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0       1.658   1.746   0.000  0.00  0.00           C+0
HETATM   67  O   UNK     0       0.762   0.573   0.000  0.00  0.00           O+0
HETATM   68  C   UNK     0       3.252   1.574   0.000  0.00  0.00           C+0
HETATM   69  O   UNK     0       2.392   2.925   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    8                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    9                                                  
CONECT    7    6    8                                                       
CONECT    8    7    2                                                       
CONECT    9    6   10   50                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   66                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16   17                                             
CONECT   15   14                                                            
CONECT   16   14                                                            
CONECT   17   14   18                                                       
CONECT   18   17   19   20   21                                             
CONECT   19   18                                                            
CONECT   20   18                                                            
CONECT   21   18   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   41                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38                                                            
CONECT   41   23   42                                                       
CONECT   42   41   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49    9   51                                                  
CONECT   51   50   52   53                                                  
CONECT   52   51                                                            
CONECT   53   51   54                                                       
CONECT   54   53   55   56                                                  
CONECT   55   54                                                            
CONECT   56   54   57   68                                                  
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60   61                                                  
CONECT   60   59                                                            
CONECT   61   59   62                                                       
CONECT   62   61   63                                                       
CONECT   63   62   64                                                       
CONECT   64   63   65                                                       
CONECT   65   64                                                            
CONECT   66   11   67   68                                                  
CONECT   67   66                                                            
CONECT   68   66   56   69                                                  
CONECT   69   68                                                            
MASTER        0    0    0    0    0    0    0    0   69    0  142    0
END
Download

3D PDB for HMDB0293558 (CDP-DG(i-14:0/PGE1))

COMPND    HMDB0293558
HETATM    1  C1  UNL     1     -14.123  -2.830  -2.762  1.00  0.00           C  
HETATM    2  C2  UNL     1     -12.626  -3.082  -2.992  1.00  0.00           C  
HETATM    3  C3  UNL     1     -11.897  -2.492  -1.807  1.00  0.00           C  
HETATM    4  C4  UNL     1     -10.397  -2.666  -1.896  1.00  0.00           C  
HETATM    5  C5  UNL     1      -9.774  -2.030  -3.092  1.00  0.00           C  
HETATM    6  C6  UNL     1     -10.012  -0.552  -3.125  1.00  0.00           C  
HETATM    7  O1  UNL     1      -9.448   0.094  -4.221  1.00  0.00           O  
HETATM    8  C7  UNL     1      -9.955   0.158  -1.855  1.00  0.00           C  
HETATM    9  C8  UNL     1      -8.829   0.471  -1.243  1.00  0.00           C  
HETATM   10  C9  UNL     1      -7.511   0.125  -1.795  1.00  0.00           C  
HETATM   11  C10 UNL     1      -6.807  -0.956  -1.084  1.00  0.00           C  
HETATM   12  O2  UNL     1      -7.599  -1.225   0.076  1.00  0.00           O  
HETATM   13  C11 UNL     1      -5.428  -0.865  -0.641  1.00  0.00           C  
HETATM   14  O3  UNL     1      -4.713  -1.966  -1.204  1.00  0.00           O  
HETATM   15  C12 UNL     1      -5.202  -1.006   0.871  1.00  0.00           C  
HETATM   16  C13 UNL     1      -4.346  -2.208   1.210  1.00  0.00           C  
HETATM   17  O4  UNL     1      -3.583  -2.072   2.342  1.00  0.00           O  
HETATM   18  P1  UNL     1      -1.953  -1.910   1.934  1.00  0.00           P  
HETATM   19  O5  UNL     1      -1.379  -0.610   2.435  1.00  0.00           O  
HETATM   20  O6  UNL     1      -1.802  -1.960   0.252  1.00  0.00           O  
HETATM   21  O7  UNL     1      -1.035  -3.140   2.645  1.00  0.00           O  
HETATM   22  P2  UNL     1       0.587  -2.675   2.794  1.00  0.00           P  
HETATM   23  O8  UNL     1       1.419  -3.931   2.842  1.00  0.00           O  
HETATM   24  O9  UNL     1       0.732  -1.864   4.266  1.00  0.00           O  
HETATM   25  O10 UNL     1       1.081  -1.620   1.579  1.00  0.00           O  
HETATM   26  C14 UNL     1       1.854  -0.572   2.071  1.00  0.00           C  
HETATM   27  C15 UNL     1       3.004  -0.185   1.197  1.00  0.00           C  
HETATM   28  C16 UNL     1       4.317  -0.585   1.880  1.00  0.00           C  
HETATM   29  O11 UNL     1       5.433  -0.136   1.097  1.00  0.00           O  
HETATM   30  C17 UNL     1       6.713  -0.348   1.524  1.00  0.00           C  
HETATM   31  O12 UNL     1       6.905  -0.948   2.614  1.00  0.00           O  
HETATM   32  C18 UNL     1       7.946   0.089   0.779  1.00  0.00           C  
HETATM   33  C19 UNL     1       8.332   1.467   1.154  1.00  0.00           C  
HETATM   34  C20 UNL     1       9.545   2.069   0.584  1.00  0.00           C  
HETATM   35  C21 UNL     1       9.664   2.275  -0.865  1.00  0.00           C  
HETATM   36  C22 UNL     1       9.636   1.169  -1.814  1.00  0.00           C  
HETATM   37  C23 UNL     1      10.546   0.025  -1.747  1.00  0.00           C  
HETATM   38  C24 UNL     1      12.008   0.182  -1.861  1.00  0.00           C  
HETATM   39  C25 UNL     1      12.657   0.951  -0.773  1.00  0.00           C  
HETATM   40  C26 UNL     1      14.154   1.046  -0.937  1.00  0.00           C  
HETATM   41  C27 UNL     1      14.917  -0.213  -0.908  1.00  0.00           C  
HETATM   42  C28 UNL     1      14.932  -1.019   0.333  1.00  0.00           C  
HETATM   43  C29 UNL     1      15.824  -2.250   0.029  1.00  0.00           C  
HETATM   44  C30 UNL     1      13.656  -1.553   0.858  1.00  0.00           C  
HETATM   45  O13 UNL     1       2.940  -0.787  -0.042  1.00  0.00           O  
HETATM   46  C31 UNL     1       2.091  -0.599  -1.092  1.00  0.00           C  
HETATM   47  O14 UNL     1       1.418  -1.603  -1.513  1.00  0.00           O  
HETATM   48  C32 UNL     1       1.896   0.679  -1.775  1.00  0.00           C  
HETATM   49  C33 UNL     1       1.113   1.714  -1.055  1.00  0.00           C  
HETATM   50  C34 UNL     1      -0.334   1.842  -1.497  1.00  0.00           C  
HETATM   51  C35 UNL     1      -1.213   1.741  -0.303  1.00  0.00           C  
HETATM   52  C36 UNL     1      -2.622   2.321  -0.508  1.00  0.00           C  
HETATM   53  C37 UNL     1      -3.263   2.283   0.865  1.00  0.00           C  
HETATM   54  C38 UNL     1      -4.756   2.388   0.880  1.00  0.00           C  
HETATM   55  C39 UNL     1      -5.363   2.729  -0.404  1.00  0.00           C  
HETATM   56  O15 UNL     1      -4.713   3.380  -1.207  1.00  0.00           O  
HETATM   57  C40 UNL     1      -6.735   2.360  -0.862  1.00  0.00           C  
HETATM   58  C41 UNL     1      -6.764   1.417  -2.024  1.00  0.00           C  
HETATM   59  O16 UNL     1      -5.535   1.253  -2.663  1.00  0.00           O  
HETATM   60  C42 UNL     1      -5.337   1.193   1.592  1.00  0.00           C  
HETATM   61  N1  UNL     1      -5.539   1.483   2.995  1.00  0.00           N  
HETATM   62  C43 UNL     1      -4.560   1.894   3.806  1.00  0.00           C  
HETATM   63  C44 UNL     1      -4.730   2.170   5.139  1.00  0.00           C  
HETATM   64  C45 UNL     1      -5.977   2.028   5.725  1.00  0.00           C  
HETATM   65  N2  UNL     1      -6.204   2.297   7.089  1.00  0.00           N  
HETATM   66  N3  UNL     1      -6.972   1.608   4.892  1.00  0.00           N  
HETATM   67  C46 UNL     1      -6.764   1.348   3.591  1.00  0.00           C  
HETATM   68  O17 UNL     1      -7.758   0.964   2.912  1.00  0.00           O  
HETATM   69  O18 UNL     1      -4.491   0.109   1.374  1.00  0.00           O  
HETATM   70  H1  UNL     1     -14.718  -2.970  -3.665  1.00  0.00           H  
HETATM   71  H2  UNL     1     -14.256  -1.762  -2.456  1.00  0.00           H  
HETATM   72  H3  UNL     1     -14.458  -3.424  -1.894  1.00  0.00           H  
HETATM   73  H4  UNL     1     -12.521  -4.201  -3.035  1.00  0.00           H  
HETATM   74  H5  UNL     1     -12.308  -2.677  -3.961  1.00  0.00           H  
HETATM   75  H6  UNL     1     -12.222  -1.449  -1.723  1.00  0.00           H  
HETATM   76  H7  UNL     1     -12.222  -3.068  -0.915  1.00  0.00           H  
HETATM   77  H8  UNL     1      -9.893  -2.430  -0.945  1.00  0.00           H  
HETATM   78  H9  UNL     1     -10.242  -3.781  -2.014  1.00  0.00           H  
HETATM   79  H10 UNL     1     -10.282  -2.509  -3.987  1.00  0.00           H  
HETATM   80  H11 UNL     1      -8.745  -2.369  -3.170  1.00  0.00           H  
HETATM   81  H12 UNL     1     -11.122  -0.509  -3.430  1.00  0.00           H  
HETATM   82  H13 UNL     1      -9.847   0.996  -4.295  1.00  0.00           H  
HETATM   83  H14 UNL     1     -10.889   0.484  -1.323  1.00  0.00           H  
HETATM   84  H15 UNL     1      -8.949   1.007  -0.281  1.00  0.00           H  
HETATM   85  H16 UNL     1      -7.685  -0.269  -2.840  1.00  0.00           H  
HETATM   86  H17 UNL     1      -6.943  -1.927  -1.663  1.00  0.00           H  
HETATM   87  H18 UNL     1      -7.543  -2.180   0.327  1.00  0.00           H  
HETATM   88  H19 UNL     1      -4.804  -0.024  -0.940  1.00  0.00           H  
HETATM   89  H20 UNL     1      -5.175  -2.305  -2.007  1.00  0.00           H  
HETATM   90  H21 UNL     1      -6.152  -1.150   1.409  1.00  0.00           H  
HETATM   91  H22 UNL     1      -3.664  -2.474   0.370  1.00  0.00           H  
HETATM   92  H23 UNL     1      -4.974  -3.125   1.354  1.00  0.00           H  
HETATM   93  H24 UNL     1      -0.918  -1.669  -0.056  1.00  0.00           H  
HETATM   94  H25 UNL     1       1.605  -1.996   4.696  1.00  0.00           H  
HETATM   95  H26 UNL     1       2.202  -0.812   3.117  1.00  0.00           H  
HETATM   96  H27 UNL     1       1.176   0.317   2.152  1.00  0.00           H  
HETATM   97  H28 UNL     1       3.077   0.936   1.145  1.00  0.00           H  
HETATM   98  H29 UNL     1       4.353  -0.021   2.825  1.00  0.00           H  
HETATM   99  H30 UNL     1       4.353  -1.653   2.084  1.00  0.00           H  
HETATM  100  H31 UNL     1       7.677   0.030  -0.288  1.00  0.00           H  
HETATM  101  H32 UNL     1       8.779  -0.604   0.964  1.00  0.00           H  
HETATM  102  H33 UNL     1       8.335   1.492   2.291  1.00  0.00           H  
HETATM  103  H34 UNL     1       7.457   2.171   0.918  1.00  0.00           H  
HETATM  104  H35 UNL     1       9.629   3.131   1.040  1.00  0.00           H  
HETATM  105  H36 UNL     1      10.491   1.605   1.032  1.00  0.00           H  
HETATM  106  H37 UNL     1      10.402   3.085  -1.105  1.00  0.00           H  
HETATM  107  H38 UNL     1       8.678   2.874  -1.122  1.00  0.00           H  
HETATM  108  H39 UNL     1       9.934   1.683  -2.835  1.00  0.00           H  
HETATM  109  H40 UNL     1       8.603   0.844  -2.101  1.00  0.00           H  
HETATM  110  H41 UNL     1      10.335  -0.645  -0.851  1.00  0.00           H  
HETATM  111  H42 UNL     1      10.220  -0.680  -2.600  1.00  0.00           H  
HETATM  112  H43 UNL     1      12.510  -0.831  -1.947  1.00  0.00           H  
HETATM  113  H44 UNL     1      12.198   0.710  -2.857  1.00  0.00           H  
HETATM  114  H45 UNL     1      12.261   1.984  -0.753  1.00  0.00           H  
HETATM  115  H46 UNL     1      12.371   0.509   0.200  1.00  0.00           H  
HETATM  116  H47 UNL     1      14.562   1.803  -0.232  1.00  0.00           H  
HETATM  117  H48 UNL     1      14.310   1.515  -1.953  1.00  0.00           H  
HETATM  118  H49 UNL     1      14.652  -0.863  -1.791  1.00  0.00           H  
HETATM  119  H50 UNL     1      16.006   0.042  -1.126  1.00  0.00           H  
HETATM  120  H51 UNL     1      15.469  -0.502   1.177  1.00  0.00           H  
HETATM  121  H52 UNL     1      15.636  -2.547  -1.015  1.00  0.00           H  
HETATM  122  H53 UNL     1      15.527  -3.096   0.668  1.00  0.00           H  
HETATM  123  H54 UNL     1      16.878  -1.985   0.200  1.00  0.00           H  
HETATM  124  H55 UNL     1      13.264  -0.975   1.742  1.00  0.00           H  
HETATM  125  H56 UNL     1      13.898  -2.561   1.343  1.00  0.00           H  
HETATM  126  H57 UNL     1      12.902  -1.801   0.115  1.00  0.00           H  
HETATM  127  H58 UNL     1       1.375   0.524  -2.771  1.00  0.00           H  
HETATM  128  H59 UNL     1       2.881   1.140  -2.097  1.00  0.00           H  
HETATM  129  H60 UNL     1       1.554   2.744  -1.193  1.00  0.00           H  
HETATM  130  H61 UNL     1       1.124   1.560   0.042  1.00  0.00           H  
HETATM  131  H62 UNL     1      -0.520   2.761  -2.069  1.00  0.00           H  
HETATM  132  H63 UNL     1      -0.620   0.997  -2.187  1.00  0.00           H  
HETATM  133  H64 UNL     1      -1.379   0.716   0.056  1.00  0.00           H  
HETATM  134  H65 UNL     1      -0.765   2.395   0.503  1.00  0.00           H  
HETATM  135  H66 UNL     1      -2.434   3.350  -0.878  1.00  0.00           H  
HETATM  136  H67 UNL     1      -3.150   1.686  -1.214  1.00  0.00           H  
HETATM  137  H68 UNL     1      -2.968   1.267   1.272  1.00  0.00           H  
HETATM  138  H69 UNL     1      -2.741   3.078   1.450  1.00  0.00           H  
HETATM  139  H70 UNL     1      -4.971   3.290   1.551  1.00  0.00           H  
HETATM  140  H71 UNL     1      -7.314   2.078   0.012  1.00  0.00           H  
HETATM  141  H72 UNL     1      -7.179   3.376  -1.141  1.00  0.00           H  
HETATM  142  H73 UNL     1      -7.352   1.985  -2.832  1.00  0.00           H  
HETATM  143  H74 UNL     1      -5.650   0.622  -3.390  1.00  0.00           H  
HETATM  144  H75 UNL     1      -6.319   0.884   1.211  1.00  0.00           H  
HETATM  145  H76 UNL     1      -3.569   2.025   3.414  1.00  0.00           H  
HETATM  146  H77 UNL     1      -3.911   2.504   5.770  1.00  0.00           H  
HETATM  147  H78 UNL     1      -5.751   3.097   7.564  1.00  0.00           H  
HETATM  148  H79 UNL     1      -6.835   1.687   7.635  1.00  0.00           H  
CONECT    1    2   70   71   72
CONECT    2    3   73   74
CONECT    3    4   75   76
CONECT    4    5   77   78
CONECT    5    6   79   80
CONECT    6    7    8   81
CONECT    7   82
CONECT    8    9    9   83
CONECT    9   10   84
CONECT   10   11   58   85
CONECT   11   12   13   86
CONECT   12   87
CONECT   13   14   15   88
CONECT   14   89
CONECT   15   16   69   90
CONECT   16   17   91   92
CONECT   17   18
CONECT   18   19   19   20   21
CONECT   20   93
CONECT   21   22
CONECT   22   23   23   24   25
CONECT   24   94
CONECT   25   26
CONECT   26   27   95   96
CONECT   27   28   45   97
CONECT   28   29   98   99
CONECT   29   30
CONECT   30   31   31   32
CONECT   32   33  100  101
CONECT   33   34  102  103
CONECT   34   35  104  105
CONECT   35   36  106  107
CONECT   36   37  108  109
CONECT   37   38  110  111
CONECT   38   39  112  113
CONECT   39   40  114  115
CONECT   40   41  116  117
CONECT   41   42  118  119
CONECT   42   43   44  120
CONECT   43  121  122  123
CONECT   44  124  125  126
CONECT   45   46
CONECT   46   47   47   48
CONECT   48   49  127  128
CONECT   49   50  129  130
CONECT   50   51  131  132
CONECT   51   52  133  134
CONECT   52   53  135  136
CONECT   53   54  137  138
CONECT   54   55   60  139
CONECT   55   56   56   57
CONECT   57   58  140  141
CONECT   58   59  142
CONECT   59  143
CONECT   60   61   69  144
CONECT   61   62   67
CONECT   62   63   63  145
CONECT   63   64  146
CONECT   64   65   66   66
CONECT   65  147  148
CONECT   66   67
CONECT   67   68   68
END
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SMILES for HMDB0293558 (CDP-DG(i-14:0/PGE1))

CCCCC[C@H](O)\C=C/[C@H]1[C@H](O)CC(=O)[C@@H]2CCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCC(C)C)COP(O)(=O)OP(O)(=O)OC[C@@H](O[C@H]2N2C=CC(N)=NC2=O)[C@@H](O)[C@H]1O
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INCHI for HMDB0293558 (CDP-DG(i-14:0/PGE1))

InChI=1S/C46H79N3O18P2/c1-4-5-14-20-33(50)24-25-35-37(51)28-38(52)36-21-16-12-13-18-23-42(54)65-34(29-62-41(53)22-17-11-9-7-6-8-10-15-19-32(2)3)30-63-68(58,59)67-69(60,61)64-31-39(44(56)43(35)55)66-45(36)49-27-26-40(47)48-46(49)57/h24-27,32-37,39,43-45,50-51,55-56H,4-23,28-31H2,1-3H3,(H,58,59)(H,60,61)(H2,47,48,57)/b25-24-/t33-,34+,35-,36-,37+,39+,43?,44+,45+/m0/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
[(1R,9R,18R,21R,22S,24S,26R)-4,6,21,23,24-Pentahydroxy-26-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)-22-[(3S)-3-hydroxyoct-1-en-1-yl]-4,6,11,19-tetraoxo-3,5,7,10,25-pentaoxa-4,6-diphosphabicyclo[16.6.2]hexacosan-9-yl]methyl 12-methyltridecanoic acidGenerator
Chemical FormulaC46H79N3O18P2
Average Molecular Weight1024.089
Monoisotopic Molecular Weight1023.483386712
IUPAC Name[(1R,9R,18R,21R,22S,23S,24S,26R)-26-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-4,6,21,23,24-pentahydroxy-22-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-4,6,11,19-tetraoxo-3,5,7,10,25-pentaoxa-4lambda5,6lambda5-diphosphabicyclo[16.6.2]hexacosan-9-yl]methyl 12-methyltridecanoate
Traditional Name[(1R,9R,18R,21R,22S,23S,24S,26R)-26-(4-amino-2-oxopyrimidin-1-yl)-4,6,21,23,24-pentahydroxy-22-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-4,6,11,19-tetraoxo-3,5,7,10,25-pentaoxa-4lambda5,6lambda5-diphosphabicyclo[16.6.2]hexacosan-9-yl]methyl 12-methyltridecanoate
CAS Registry NumberNot Available
SMILES
CCCCC[C@H](O)\C=C/[C@H]1[C@H](O)CC(=O)[C@@H]2CCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCC(C)C)COP(O)(=O)OP(O)(=O)OC[C@@H](O[C@H]2N2C=CC(N)=NC2=O)[C@@H](O)[C@H]1O
InChI Identifier
InChI=1S/C46H79N3O18P2/c1-4-5-14-20-33(50)24-25-35-37(51)28-38(52)36-21-16-12-13-18-23-42(54)65-34(29-62-41(53)22-17-11-9-7-6-8-10-15-19-32(2)3)30-63-68(58,59)67-69(60,61)64-31-39(44(56)43(35)55)66-45(36)49-27-26-40(47)48-46(49)57/h24-27,32-37,39,43-45,50-51,55-56H,4-23,28-31H2,1-3H3,(H,58,59)(H,60,61)(H2,47,48,57)/b25-24-/t33-,34+,35-,36-,37+,39+,43?,44+,45+/m0/s1
InChI KeyZTWIORLTSUWLFF-RGKKMIGPSA-N
Chemical Taxonomy
ClassificationNot classified
Ontology
Physiological effectNot Available
DispositionNot Available
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.63ALOGPS
logP5.59ChemAxon
logS-3.6ALOGPS
pKa (Strongest Acidic)1.87ChemAxon
pKa (Strongest Basic)0.33ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count15ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area320.8 ŲChemAxon
Rotatable Bond Count21ChemAxon
Refractivity252.25 m³·mol⁻¹ChemAxon
Polarizability107.54 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+302.65932859911
AllCCS[M+H-H2O]+303.0832859911
AllCCS[M+Na]+302.10332859911
AllCCS[M+NH4]+302.23232859911
AllCCS[M-H]-304.68232859911
AllCCS[M+Na-2H]-311.27932859911
AllCCS[M+HCOO]-318.47132859911
DeepCCS[M+H]+312.98530932474
DeepCCS[M-H]-310.59630932474
DeepCCS[M-2H]-344.27530932474
DeepCCS[M+Na]+319.28430932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CDP-DG(i-14:0/PGE1) 10V, Positive-QTOFsplash10-0c09-9400000003-f2d562bcc6026c533a032021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CDP-DG(i-14:0/PGE1) 20V, Positive-QTOFsplash10-0a4r-9100000014-1e9212c3ab0a33cbf0362021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CDP-DG(i-14:0/PGE1) 40V, Positive-QTOFsplash10-0a4i-9500000300-53b40901d7bebaed9dbd2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CDP-DG(i-14:0/PGE1) 10V, Negative-QTOFsplash10-00di-9000000000-d65d4e31024d156725752021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CDP-DG(i-14:0/PGE1) 20V, Negative-QTOFsplash10-0wb9-9230000216-a1758d51a83e4bd27cca2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - CDP-DG(i-14:0/PGE1) 40V, Negative-QTOFsplash10-08fu-5940000502-88c89a6d70583a0c59ac2021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Hajeyah AA, Griffiths WJ, Wang Y, Finch AJ, O'Donnell VB: The Biosynthesis of Enzymatically Oxidized Lipids. Front Endocrinol (Lausanne). 2020 Nov 19;11:591819. doi: 10.3389/fendo.2020.591819. eCollection 2020. [PubMed:33329396 ]