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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-23 05:53:43 UTC
Update Date2021-09-23 05:53:43 UTC
HMDB IDHMDB0302034
Secondary Accession NumbersNone
Metabolite Identification
Common Name(13Z)-Lycopene
Description(13z)-lycopene is a member of the class of compounds known as carotenes. Carotenes are a type of unsaturated hydrocarbons containing eight consecutive isoprene units. They are characterized by the presence of two end-groups (mostly cyclohexene rings, but also cyclopentene rings or acyclic groups) linked by a long branched alkyl chain. Carotenes belonging form a subgroup of the carotenoids family (13z)-lycopene can be found in guava, which makes (13z)-lycopene a potential biomarker for the consumption of this food product.
Structure
Thumb
Synonyms
ValueSource
(13Z)-LycopeneChEBI
(13Z)-Psi,psi-caroteneChEBI
(6E,8E,10E,12E,14Z,16E,18E,20E,22E,24E,26E)-2,6,10,14,19,23,27,31-Octamethyldotriaconta-2,6,8,10,12,14,16,18,20,22,24,26,30-tridecaeneChEBI
Chemical FormulaC40H56
Average Molecular Weight536.8726
Monoisotopic Molecular Weight536.438201792
IUPAC Name(6E,8E,10E,12E,14Z,16E,18E,20E,22E,24E,26E)-2,6,10,14,19,23,27,31-octamethyldotriaconta-2,6,8,10,12,14,16,18,20,22,24,26,30-tridecaene
Traditional Name(6E,8E,10E,12E,14Z,16E,18E,20E,22E,24E,26E)-2,6,10,14,19,23,27,31-octamethyldotriaconta-2,6,8,10,12,14,16,18,20,22,24,26,30-tridecaene
CAS Registry NumberNot Available
SMILES
CC(C)=CCC\C(C)=C\C=C\C(\C)=C\C=C\C(\C)=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C=C(\C)CCC=C(C)C
InChI Identifier
InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3/b12-11+,25-15+,26-16+,31-17+,32-18+,35-21-,36-22+,37-27+,38-28+,39-29+,40-30+
InChI KeyOAIJSZIZWZSQBC-FZXCKFLSSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as carotenes. These are a type of unsaturated hydrocarbons containing eight consecutive isoprene units. They are characterized by the presence of two end-groups (mostly cyclohexene rings, but also cyclopentene rings or acyclic groups) linked by a long branched alkyl chain. Carotenes belonging form a subgroup of the carotenoids family.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTetraterpenoids
Direct ParentCarotenes
Alternative Parents
Substituents
  • Carotene
  • Branched unsaturated hydrocarbon
  • Unsaturated aliphatic hydrocarbon
  • Unsaturated hydrocarbon
  • Olefin
  • Acyclic olefin
  • Hydrocarbon
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP9.16ALOGPS
logP11.93ChemAxon
logS-6.1ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count16ChemAxon
Refractivity197.81 m³·mol⁻¹ChemAxon
Polarizability72.47 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+237.01332859911
AllCCS[M+H-H2O]+235.35332859911
AllCCS[M+Na]+238.99732859911
AllCCS[M+NH4]+238.55432859911
AllCCS[M-H]-228.34332859911
AllCCS[M+Na-2H]-230.20532859911
AllCCS[M+HCOO]-232.39932859911
DeepCCS[M+H]+251.5630932474
DeepCCS[M-H]-249.66430932474
DeepCCS[M-2H]-282.90430932474
DeepCCS[M+Na]+257.29330932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z)-Lycopene 10V, Positive-QTOFsplash10-000i-0333490000-4e9a5975acd39d46ed6f2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z)-Lycopene 20V, Positive-QTOFsplash10-0012-1968510000-01d32351dab7917ce5d22016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z)-Lycopene 40V, Positive-QTOFsplash10-0159-4569500000-a5b112a0bf1e360b24802016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z)-Lycopene 10V, Negative-QTOFsplash10-000i-0000090000-77adf3223ff2af4c4c1a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z)-Lycopene 20V, Negative-QTOFsplash10-000i-0000090000-0b5e06bca49e37a860ef2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z)-Lycopene 40V, Negative-QTOFsplash10-014i-1859480000-4c571e364bf31d6a314e2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z)-Lycopene 10V, Positive-QTOFsplash10-000i-2235970000-73fc43e90358e2cae3712021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z)-Lycopene 20V, Positive-QTOFsplash10-0fc1-2011900000-667641d02a3eee5d267d2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z)-Lycopene 40V, Positive-QTOFsplash10-0wb9-1223900000-52a07bb8af9e23809e6e2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z)-Lycopene 10V, Negative-QTOFsplash10-000i-0000090000-13589a3f961fdd9c0c6a2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z)-Lycopene 20V, Negative-QTOFsplash10-000i-0926580000-889c9c655f28c8c703c82021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z)-Lycopene 40V, Negative-QTOFsplash10-0gb9-0503910000-a80f0ec28aa2775d93e02021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB001774
KNApSAcK IDC00023252
Chemspider ID4944595
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound6440310
PDB IDNot Available
ChEBI ID177907
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available