Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-23 17:43:45 UTC
Update Date2021-09-23 17:43:45 UTC
HMDB IDHMDB0302431
Secondary Accession NumbersNone
Metabolite Identification
Common NameNona-trans-2-cis-6-dien-1-al
DescriptionNona-trans-2-cis-6-dien-1-al, also known as 2,6-nonadienal, (e,z)-isomer or 2-trans-6-cis-nonadienal, is a member of the class of compounds known as medium-chain aldehydes. Medium-chain aldehydes are an aldehyde with a chain length containing between 6 and 12 carbon atoms. Nona-trans-2-cis-6-dien-1-al is practically insoluble (in water) and an extremely weak basic (essentially neutral) compound (based on its pKa). Nona-trans-2-cis-6-dien-1-al can be found in common wheat, cucumber, tea, and watermelon, which makes nona-trans-2-cis-6-dien-1-al a potential biomarker for the consumption of these food products.
Structure
Thumb
Synonyms
ValueSource
2,6-Nonadienal, (e,e)-isomerMeSH
2,6-Nonadienal, (e,Z)-isomerMeSH
2-trans-6-cis-NonadienalMeSH
2,6-NonadienalMeSH
Chemical FormulaC9H14O
Average Molecular Weight138.21
Monoisotopic Molecular Weight138.104465071
IUPAC Namenona-2,6-dienal
Traditional Namenona-2,6-dienal
CAS Registry NumberNot Available
SMILES
CCC=CCCC=CC=O
InChI Identifier
InChI=1S/C9H14O/c1-2-3-4-5-6-7-8-9-10/h3-4,7-9H,2,5-6H2,1H3
InChI KeyHZYHMHHBBBSGHB-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain aldehydes. These are an aldehyde with a chain length containing between 6 and 12 carbon atoms.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbonyl compounds
Direct ParentMedium-chain aldehydes
Alternative Parents
Substituents
  • Medium-chain aldehyde
  • Enal
  • Alpha,beta-unsaturated aldehyde
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.13ALOGPS
logP2.62ChemAxon
logS-3.1ALOGPS
pKa (Strongest Basic)-4.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area17.07 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity46.16 m³·mol⁻¹ChemAxon
Polarizability17.09 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+133.25632859911
AllCCS[M+H-H2O]+129.06432859911
AllCCS[M+Na]+138.29232859911
AllCCS[M+NH4]+137.16432859911
AllCCS[M-H]-135.832859911
AllCCS[M+Na-2H]-138.00932859911
AllCCS[M+HCOO]-140.50232859911
DeepCCS[M+H]+131.33830932474
DeepCCS[M-H]-128.48930932474
DeepCCS[M-2H]-165.04930932474
DeepCCS[M+Na]+139.87430932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nona-trans-2-cis-6-dien-1-al 10V, Positive-QTOFsplash10-000i-2900000000-5b68984796a69b6566252016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nona-trans-2-cis-6-dien-1-al 20V, Positive-QTOFsplash10-0079-9500000000-a06b0ff5cc696d2ad5c32016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nona-trans-2-cis-6-dien-1-al 40V, Positive-QTOFsplash10-0ktf-9000000000-fcce0a3da84424696cbc2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nona-trans-2-cis-6-dien-1-al 10V, Negative-QTOFsplash10-000i-0900000000-fd081e72d328181ddf672016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nona-trans-2-cis-6-dien-1-al 20V, Negative-QTOFsplash10-000i-1900000000-4a10e15a630365ec45992016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nona-trans-2-cis-6-dien-1-al 40V, Negative-QTOFsplash10-0006-9200000000-88b1eef5d11911d774902016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nona-trans-2-cis-6-dien-1-al 10V, Positive-QTOFsplash10-00ou-9000000000-0ac9617c95369691b71e2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nona-trans-2-cis-6-dien-1-al 20V, Positive-QTOFsplash10-0lfu-9000000000-c30a057f252fd16973882021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nona-trans-2-cis-6-dien-1-al 40V, Positive-QTOFsplash10-014i-9000000000-5a9e3e57912939699d8a2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nona-trans-2-cis-6-dien-1-al 10V, Negative-QTOFsplash10-000i-3900000000-19354149df8bc2d1cedc2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nona-trans-2-cis-6-dien-1-al 20V, Negative-QTOFsplash10-0a4i-1900000000-b1b6ba9146907e2f72ff2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nona-trans-2-cis-6-dien-1-al 40V, Negative-QTOFsplash10-014i-9000000000-4f2caec2a1ecfd02dd272021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB004545
KNApSAcK IDNot Available
Chemspider ID10723
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available