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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-23 18:32:25 UTC
Update Date2021-09-23 18:32:25 UTC
HMDB IDHMDB0302538
Secondary Accession NumbersNone
Metabolite Identification
Common NameLinonin
DescriptionLinonin, also known as 7,16-dioxo-7,16-dideoxylimondiol or evodin, is a member of the class of compounds known as limonoids. Limonoids are highly oxygenated, modified terpenoids with a prototypical structure either containing or derived from a precursor with a 4,4,8-trimethyl-17-furanylsteroid skeleton. All naturally occurring citrus limonoids contain a furan ring attached to the D-ring, at C-17, as well as oxygen containing functional groups at C-3, C-4, C-7, C-16 and C-17. Linonin is practically insoluble (in water) and an extremely weak acidic compound (based on its pKa). Linonin can be found in lemon, which makes linonin a potential biomarker for the consumption of this food product.
Structure
Thumb
Synonyms
ValueSource
7,16-Dioxo-7,16-dideoxylimondiolChEBI
CitrolimoninChEBI
DictamnolactoneChEBI
Evodia fruitChEBI
EvodinChEBI
Limonoate D-ring-lactoneChEBI
Limonoic acid 3,19:16,17-dilactoneChEBI
Limonoic acid, di-delta-lactoneChEBI
ObaculactoneChEBI
Limonoic acid D-ring-lactoneGenerator
Limonoate 3,19:16,17-dilactoneGenerator
Limonoate, di-delta-lactoneGenerator
Limonoate, di-δ-lactoneGenerator
Limonoic acid, di-δ-lactoneGenerator
Chemical FormulaC26H30O8
Average Molecular Weight470.518
Monoisotopic Molecular Weight470.194067926
IUPAC Name(1R,2R,7S,10R,13R,14R,16S,19R,20S)-19-(furan-3-yl)-9,9,13,20-tetramethyl-4,8,15,18-tetraoxahexacyclo[11.9.0.0²,⁷.0²,¹⁰.0¹⁴,¹⁶.0¹⁴,²⁰]docosane-5,12,17-trione
Traditional Namelimonin
CAS Registry NumberNot Available
SMILES
CC1(C)O[C@H]2CC(=O)OC[C@@]22[C@H]1CC(=O)[C@]1(C)[C@@H]2CC[C@@]2(C)[C@@H](OC(=O)[C@H]3O[C@@]123)C1=COC=C1
InChI Identifier
InChI=1S/C26H30O8/c1-22(2)15-9-16(27)24(4)14(25(15)12-31-18(28)10-17(25)33-22)5-7-23(3)19(13-6-8-30-11-13)32-21(29)20-26(23,24)34-20/h6,8,11,14-15,17,19-20H,5,7,9-10,12H2,1-4H3/t14-,15-,17-,19-,20+,23-,24-,25+,26+/m0/s1
InChI KeyKBDSLGBFQAGHBE-MSGMIQHVSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as limonoids. These are highly oxygenated, modified terpenoids with a prototypical structure either containing or derived from a precursor with a 4,4,8-trimethyl-17-furanylsteroid skeleton. All naturally occurring citrus limonoids contain a furan ring attached to the D-ring, at C-17, as well as oxygen containing functional groups at C-3, C-4, C-7, C-16 and C-17.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTriterpenoids
Direct ParentLimonoids
Alternative Parents
Substituents
  • Limonoid skeleton
  • Steroid lactone
  • 11-oxosteroid
  • Oxosteroid
  • 2-oxosteroid
  • Steroid
  • Naphthopyran
  • Naphthalene
  • Delta valerolactone
  • Dioxepane
  • 1,4-dioxepane
  • Delta_valerolactone
  • Pyran
  • Oxane
  • Dicarboxylic acid or derivatives
  • Tetrahydrofuran
  • Heteroaromatic compound
  • Furan
  • Carboxylic acid ester
  • Lactone
  • Ketone
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Oxacycle
  • Dialkyl ether
  • Oxirane
  • Ether
  • Organooxygen compound
  • Organic oxide
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Not AvailableNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.47ALOGPS
logP2.46ChemAxon
logS-3.8ALOGPS
pKa (Strongest Acidic)17.61ChemAxon
pKa (Strongest Basic)-2.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area104.57 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity114.72 m³·mol⁻¹ChemAxon
Polarizability47.81 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+208.47432859911
AllCCS[M+H-H2O]+206.47532859911
AllCCS[M+Na]+210.82932859911
AllCCS[M+NH4]+210.30632859911
AllCCS[M-H]-213.28932859911
AllCCS[M+Na-2H]-214.16832859911
AllCCS[M+HCOO]-215.2932859911
DeepCCS[M-2H]-242.86130932474
DeepCCS[M+Na]+216.63530932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Linonin,1TMS,isomer #1CC1(C)O[C@H]2CC(=O)OC[C@@]23[C@H]1C=C(O[Si](C)(C)C)[C@]1(C)[C@@H]3CC[C@@]2(C)[C@H](C3=COC=C3)OC(=O)[C@H]3O[C@]3213474.0Semi standard non polar33892256
Linonin,1TMS,isomer #1CC1(C)O[C@H]2CC(=O)OC[C@@]23[C@H]1C=C(O[Si](C)(C)C)[C@]1(C)[C@@H]3CC[C@@]2(C)[C@H](C3=COC=C3)OC(=O)[C@H]3O[C@]3213264.5Standard non polar33892256
Linonin,1TMS,isomer #1CC1(C)O[C@H]2CC(=O)OC[C@@]23[C@H]1C=C(O[Si](C)(C)C)[C@]1(C)[C@@H]3CC[C@@]2(C)[C@H](C3=COC=C3)OC(=O)[C@H]3O[C@]3214144.3Standard polar33892256
Linonin,1TBDMS,isomer #1CC1(C)O[C@H]2CC(=O)OC[C@@]23[C@H]1C=C(O[Si](C)(C)C(C)(C)C)[C@]1(C)[C@@H]3CC[C@@]2(C)[C@H](C3=COC=C3)OC(=O)[C@H]3O[C@]3213710.7Semi standard non polar33892256
Linonin,1TBDMS,isomer #1CC1(C)O[C@H]2CC(=O)OC[C@@]23[C@H]1C=C(O[Si](C)(C)C(C)(C)C)[C@]1(C)[C@@H]3CC[C@@]2(C)[C@H](C3=COC=C3)OC(=O)[C@H]3O[C@]3213475.0Standard non polar33892256
Linonin,1TBDMS,isomer #1CC1(C)O[C@H]2CC(=O)OC[C@@]23[C@H]1C=C(O[Si](C)(C)C(C)(C)C)[C@]1(C)[C@@H]3CC[C@@]2(C)[C@H](C3=COC=C3)OC(=O)[C@H]3O[C@]3214242.9Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Linonin 10V, Positive-QTOFsplash10-0fk9-0000900000-14a8d5118cba8888143e2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Linonin 20V, Positive-QTOFsplash10-0imr-0012900000-e15742fc2818641d4e3c2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Linonin 40V, Positive-QTOFsplash10-0002-9451200000-62846b9bdf53b1e33f3b2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Linonin 10V, Negative-QTOFsplash10-00or-0000900000-bca1445462cc35111c202016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Linonin 20V, Negative-QTOFsplash10-0gdi-1001900000-9172a8bb0d53d923c5722016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Linonin 40V, Negative-QTOFsplash10-0005-6009200000-2032a143d36c06bf24042016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Linonin 10V, Positive-QTOFsplash10-00di-0000900000-b8ab25ad98350c2823ca2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Linonin 20V, Positive-QTOFsplash10-00fr-0010900000-f78ec9bfcbf614a341cb2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Linonin 40V, Positive-QTOFsplash10-03gi-1460900000-329d430a9185fb234de42021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Linonin 10V, Negative-QTOFsplash10-004i-0000900000-d297686d7426b68c96ce2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Linonin 20V, Negative-QTOFsplash10-014i-0000900000-ff496abcb051f215a95e2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Linonin 40V, Negative-QTOFsplash10-014i-0001900000-52252c8a0c93946623bb2021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB005049
KNApSAcK IDC00003719
Chemspider ID156367
KEGG Compound IDC03514
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkLimonin
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID16226
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1667071
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available