Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-23 21:09:49 UTC
Update Date2021-09-23 21:09:49 UTC
HMDB IDHMDB0302852
Secondary Accession NumbersNone
Metabolite Identification
Common Name5alpha-Stigmastan-3,6-dione
Description5alpha-Stigmastan-3,6-dione belongs to the class of organic compounds known as stigmastanes and derivatives. These are sterol lipids with a structure based on the stigmastane skeleton, which consists of a cholestane moiety bearing an ethyl group at the carbon atom C24. 5alpha-Stigmastan-3,6-dione is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Thumb
Synonyms
ValueSource
5a-Stigmastan-3,6-dioneGenerator
5Α-stigmastan-3,6-dioneGenerator
Chemical FormulaC29H48O2
Average Molecular Weight428.6902
Monoisotopic Molecular Weight428.36543078
IUPAC Name(2R,7S,15R)-14-[(2R,5R)-5-ethyl-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,8-dione
Traditional Name(2R,7S,15R)-14-[(2R,5R)-5-ethyl-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,8-dione
CAS Registry NumberNot Available
SMILES
[H][C@]12CC(=O)CC[C@]1(C)C1CC[C@]3(C)C(CCC3C1CC2=O)[C@H](C)CC[C@@H](CC)C(C)C
InChI Identifier
InChI=1S/C29H48O2/c1-7-20(18(2)3)9-8-19(4)23-10-11-24-22-17-27(31)26-16-21(30)12-14-29(26,6)25(22)13-15-28(23,24)5/h18-20,22-26H,7-17H2,1-6H3/t19-,20-,22?,23?,24?,25?,26-,28-,29-/m1/s1
InChI KeyHMMVBUVVQLUGQA-RMOVGXNUSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as stigmastanes and derivatives. These are sterol lipids with a structure based on the stigmastane skeleton, which consists of a cholestane moiety bearing an ethyl group at the carbon atom C24.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassStigmastanes and derivatives
Direct ParentStigmastanes and derivatives
Alternative Parents
Substituents
  • Triterpenoid
  • Stigmastane-skeleton
  • Ecdysteroid
  • 6-oxosteroid
  • 3-oxo-5-alpha-steroid
  • Oxosteroid
  • 3-oxosteroid
  • Cyclic ketone
  • Ketone
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP6.16ALOGPS
logP7.53ChemAxon
logS-7.1ALOGPS
pKa (Strongest Acidic)17.77ChemAxon
pKa (Strongest Basic)-7.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area34.14 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity128.56 m³·mol⁻¹ChemAxon
Polarizability53.77 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+209.68532859911
AllCCS[M+H-H2O]+207.8132859911
AllCCS[M+Na]+211.89632859911
AllCCS[M+NH4]+211.40532859911
AllCCS[M-H]-207.1432859911
AllCCS[M+Na-2H]-209.37232859911
AllCCS[M+HCOO]-211.98132859911
DeepCCS[M-2H]-242.57830932474
DeepCCS[M+Na]+218.22130932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
5alpha-Stigmastan-3,6-dione,1TMS,isomer #1CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C)=C4CC(=O)CC[C@]4(C)C3CC[C@@]21C)C(C)C3445.2Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TMS,isomer #1CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C)=C4CC(=O)CC[C@]4(C)C3CC[C@@]21C)C(C)C3437.9Standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TMS,isomer #1CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C)=C4CC(=O)CC[C@]4(C)C3CC[C@@]21C)C(C)C3672.0Standard polar33892256
5alpha-Stigmastan-3,6-dione,1TMS,isomer #2CC[C@H](CC[C@@H](C)C1CCC2C3CC(=O)[C@H]4CC(O[Si](C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3508.4Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TMS,isomer #2CC[C@H](CC[C@@H](C)C1CCC2C3CC(=O)[C@H]4CC(O[Si](C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3461.4Standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TMS,isomer #2CC[C@H](CC[C@@H](C)C1CCC2C3CC(=O)[C@H]4CC(O[Si](C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3696.9Standard polar33892256
5alpha-Stigmastan-3,6-dione,1TMS,isomer #3CC[C@H](CC[C@@H](C)C1CCC2C3CC(=O)[C@H]4C=C(O[Si](C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3416.0Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TMS,isomer #3CC[C@H](CC[C@@H](C)C1CCC2C3CC(=O)[C@H]4C=C(O[Si](C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3469.8Standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TMS,isomer #3CC[C@H](CC[C@@H](C)C1CCC2C3CC(=O)[C@H]4C=C(O[Si](C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3705.1Standard polar33892256
5alpha-Stigmastan-3,6-dione,1TMS,isomer #4CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C)[C@H]4CC(=O)CC[C@]4(C)C3CC[C@@]21C)C(C)C3437.3Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TMS,isomer #4CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C)[C@H]4CC(=O)CC[C@]4(C)C3CC[C@@]21C)C(C)C3358.0Standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TMS,isomer #4CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C)[C@H]4CC(=O)CC[C@]4(C)C3CC[C@@]21C)C(C)C3634.5Standard polar33892256
5alpha-Stigmastan-3,6-dione,2TMS,isomer #1CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C)=C4CC(O[Si](C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3360.2Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TMS,isomer #1CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C)=C4CC(O[Si](C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3520.7Standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TMS,isomer #1CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C)=C4CC(O[Si](C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3710.4Standard polar33892256
5alpha-Stigmastan-3,6-dione,2TMS,isomer #2CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C)=C4C=C(O[Si](C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3484.1Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TMS,isomer #2CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C)=C4C=C(O[Si](C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3489.9Standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TMS,isomer #2CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C)=C4C=C(O[Si](C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3751.9Standard polar33892256
5alpha-Stigmastan-3,6-dione,2TMS,isomer #3CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C)[C@H]4CC(O[Si](C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3388.6Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TMS,isomer #3CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C)[C@H]4CC(O[Si](C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3417.9Standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TMS,isomer #3CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C)[C@H]4CC(O[Si](C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3670.3Standard polar33892256
5alpha-Stigmastan-3,6-dione,2TMS,isomer #4CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C)[C@H]4C=C(O[Si](C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3363.6Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TMS,isomer #4CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C)[C@H]4C=C(O[Si](C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3404.5Standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TMS,isomer #4CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C)[C@H]4C=C(O[Si](C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3713.8Standard polar33892256
5alpha-Stigmastan-3,6-dione,1TBDMS,isomer #1CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C(C)(C)C)=C4CC(=O)CC[C@]4(C)C3CC[C@@]21C)C(C)C3668.6Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TBDMS,isomer #1CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C(C)(C)C)=C4CC(=O)CC[C@]4(C)C3CC[C@@]21C)C(C)C3697.1Standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TBDMS,isomer #1CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C(C)(C)C)=C4CC(=O)CC[C@]4(C)C3CC[C@@]21C)C(C)C3788.0Standard polar33892256
5alpha-Stigmastan-3,6-dione,1TBDMS,isomer #2CC[C@H](CC[C@@H](C)C1CCC2C3CC(=O)[C@H]4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3729.8Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TBDMS,isomer #2CC[C@H](CC[C@@H](C)C1CCC2C3CC(=O)[C@H]4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3664.8Standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TBDMS,isomer #2CC[C@H](CC[C@@H](C)C1CCC2C3CC(=O)[C@H]4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3811.7Standard polar33892256
5alpha-Stigmastan-3,6-dione,1TBDMS,isomer #3CC[C@H](CC[C@@H](C)C1CCC2C3CC(=O)[C@H]4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3643.9Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TBDMS,isomer #3CC[C@H](CC[C@@H](C)C1CCC2C3CC(=O)[C@H]4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3681.4Standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TBDMS,isomer #3CC[C@H](CC[C@@H](C)C1CCC2C3CC(=O)[C@H]4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3821.5Standard polar33892256
5alpha-Stigmastan-3,6-dione,1TBDMS,isomer #4CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C(C)(C)C)[C@H]4CC(=O)CC[C@]4(C)C3CC[C@@]21C)C(C)C3655.0Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TBDMS,isomer #4CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C(C)(C)C)[C@H]4CC(=O)CC[C@]4(C)C3CC[C@@]21C)C(C)C3517.0Standard non polar33892256
5alpha-Stigmastan-3,6-dione,1TBDMS,isomer #4CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C(C)(C)C)[C@H]4CC(=O)CC[C@]4(C)C3CC[C@@]21C)C(C)C3749.5Standard polar33892256
5alpha-Stigmastan-3,6-dione,2TBDMS,isomer #1CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C(C)(C)C)=C4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3810.4Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TBDMS,isomer #1CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C(C)(C)C)=C4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3904.2Standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TBDMS,isomer #1CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C(C)(C)C)=C4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3896.6Standard polar33892256
5alpha-Stigmastan-3,6-dione,2TBDMS,isomer #2CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C(C)(C)C)=C4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3927.2Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TBDMS,isomer #2CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C(C)(C)C)=C4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3874.1Standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TBDMS,isomer #2CC[C@H](CC[C@@H](C)C1CCC2C3CC(O[Si](C)(C)C(C)(C)C)=C4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3944.4Standard polar33892256
5alpha-Stigmastan-3,6-dione,2TBDMS,isomer #3CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C(C)(C)C)[C@H]4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3838.1Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TBDMS,isomer #3CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C(C)(C)C)[C@H]4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3709.3Standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TBDMS,isomer #3CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C(C)(C)C)[C@H]4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)C3CC[C@@]21C)C(C)C3849.9Standard polar33892256
5alpha-Stigmastan-3,6-dione,2TBDMS,isomer #4CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C(C)(C)C)[C@H]4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3826.0Semi standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TBDMS,isomer #4CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C(C)(C)C)[C@H]4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3703.3Standard non polar33892256
5alpha-Stigmastan-3,6-dione,2TBDMS,isomer #4CC[C@H](CC[C@@H](C)C1CCC2C3C=C(O[Si](C)(C)C(C)(C)C)[C@H]4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)C3CC[C@@]21C)C(C)C3902.7Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Stigmastan-3,6-dione 10V, Positive-QTOFsplash10-004i-0103900000-7dfde92408f76de886f22016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Stigmastan-3,6-dione 20V, Positive-QTOFsplash10-01r2-7219300000-d6263e89d2bb39dcfe262016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Stigmastan-3,6-dione 40V, Positive-QTOFsplash10-00l2-9137000000-9a81697c69976fbdb5752016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Stigmastan-3,6-dione 10V, Negative-QTOFsplash10-004i-0000900000-53df3826e33b598ebe0a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Stigmastan-3,6-dione 20V, Negative-QTOFsplash10-004i-0000900000-8a4c032e4dc904db871b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Stigmastan-3,6-dione 40V, Negative-QTOFsplash10-0bta-9007700000-e88ff2a80818b131dfb82016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Stigmastan-3,6-dione 10V, Positive-QTOFsplash10-01t9-1113900000-50345234d8e13e50615c2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Stigmastan-3,6-dione 20V, Positive-QTOFsplash10-0303-9212200000-d38642bd99f666ecc4452021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Stigmastan-3,6-dione 40V, Positive-QTOFsplash10-06r7-9500000000-4c3212524bf2761eba0e2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Stigmastan-3,6-dione 10V, Negative-QTOFsplash10-004i-0000900000-08c8d00e3f1ae63a05c92021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Stigmastan-3,6-dione 20V, Negative-QTOFsplash10-004i-0001900000-46b57c866c76216eea2b2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Stigmastan-3,6-dione 40V, Negative-QTOFsplash10-0ar1-0009500000-0e29cc4942e0bf83b3cd2021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB006546
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available