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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-23 23:14:25 UTC
Update Date2021-09-23 23:14:26 UTC
HMDB IDHMDB0303090
Secondary Accession NumbersNone
Metabolite Identification
Common Name[12]-Gingerdiol
Description[12]-gingerdiol is a member of the class of compounds known as gingerdiols. Gingerdiols are compounds containing a gingerdiol moiety, which is structurally characterized by a 4-hydroxy-3-methoxyphenyl group substituted at the C6 carbon atom by an alkane-2,4-diol. [12]-gingerdiol is practically insoluble (in water) and a very weakly acidic compound (based on its pKa). [12]-gingerdiol can be found in ginger, which makes [12]-gingerdiol a potential biomarker for the consumption of this food product.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC23H40O4
Average Molecular Weight380.5613
Monoisotopic Molecular Weight380.292659768
IUPAC Name1-(4-hydroxy-3-methoxyphenyl)hexadecane-3,5-diol
Traditional Name1-(4-hydroxy-3-methoxyphenyl)hexadecane-3,5-diol
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCC(O)CC(O)CCC1=CC(OC)=C(O)C=C1
InChI Identifier
InChI=1S/C23H40O4/c1-3-4-5-6-7-8-9-10-11-12-20(24)18-21(25)15-13-19-14-16-22(26)23(17-19)27-2/h14,16-17,20-21,24-26H,3-13,15,18H2,1-2H3
InChI KeyHWCBBIAYOKOIHB-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as gingerdiols. Gingerdiols are compounds containing a gingerdiol moiety, which is structurally characterized by a 4-hydroxy-3-methoxyphenyl group substituted at the C6 carbon atom by an alkane-2,4-diol.
KingdomOrganic compounds
Super ClassBenzenoids
ClassPhenols
Sub ClassMethoxyphenols
Direct ParentGingerdiols
Alternative Parents
Substituents
  • Gingerdiol
  • Long chain fatty alcohol
  • Fatty alcohol
  • Phenoxy compound
  • Anisole
  • Methoxybenzene
  • Phenol ether
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Monocyclic benzene moiety
  • Fatty acyl
  • Secondary alcohol
  • Ether
  • Organic oxygen compound
  • Alcohol
  • Hydrocarbon derivative
  • Organooxygen compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP6.05ALOGPS
logP5.85ChemAxon
logS-4.7ALOGPS
pKa (Strongest Acidic)10.28ChemAxon
pKa (Strongest Basic)-2.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area69.92 ŲChemAxon
Rotatable Bond Count16ChemAxon
Refractivity111.85 m³·mol⁻¹ChemAxon
Polarizability47.56 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+205.11132859911
AllCCS[M+H-H2O]+202.65732859911
AllCCS[M+Na]+208.02132859911
AllCCS[M+NH4]+207.37332859911
AllCCS[M-H]-200.36732859911
AllCCS[M+Na-2H]-202.54532859911
AllCCS[M+HCOO]-205.132859911
DeepCCS[M+H]+202.87230932474
DeepCCS[M-H]-200.32230932474
DeepCCS[M-2H]-233.52630932474
DeepCCS[M+Na]+209.54330932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [12]-Gingerdiol 10V, Positive-QTOFsplash10-03e9-0109000000-7d39434a0af6da1532b62016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [12]-Gingerdiol 20V, Positive-QTOFsplash10-03dr-1914000000-e44ed485e9b7cc0a2e812016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [12]-Gingerdiol 40V, Positive-QTOFsplash10-000f-7941000000-b6947fd232674b01b20a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [12]-Gingerdiol 10V, Negative-QTOFsplash10-004i-0109000000-98d1a7b033bcaa30b3322016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [12]-Gingerdiol 20V, Negative-QTOFsplash10-01ta-0906000000-d3bf825b89e7b3fa4f322016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [12]-Gingerdiol 40V, Negative-QTOFsplash10-055b-1901000000-06402a9d313b3d129b7a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [12]-Gingerdiol 10V, Positive-QTOFsplash10-01qa-0209000000-06ca119d35cd4dd22ade2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [12]-Gingerdiol 20V, Positive-QTOFsplash10-0019-2943000000-947386c64b96f146ce6a2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [12]-Gingerdiol 40V, Positive-QTOFsplash10-053l-9700000000-00f82c540b9844d98c9a2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [12]-Gingerdiol 10V, Negative-QTOFsplash10-004i-0109000000-70915baccd185503d8612021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [12]-Gingerdiol 20V, Negative-QTOFsplash10-004i-1839000000-1f7b3adecf6bff46ef042021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [12]-Gingerdiol 40V, Negative-QTOFsplash10-06vr-3892000000-fe59a4dcdc6483b7e80f2021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB007722
KNApSAcK IDNot Available
Chemspider ID59696441
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound86196540
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available