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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-23 23:19:07 UTC
Update Date2021-09-23 23:19:07 UTC
HMDB IDHMDB0303100
Secondary Accession NumbersNone
Metabolite Identification
Common Name[9]-Gingerol
Description[9]-gingerol is a member of the class of compounds known as gingerols. Gingerols are compounds containing a gingerol moiety, which is structurally characterized by a 4-hydroxy-3-methoxyphenyl group substituted at the C6 carbon atom by a 5-hydroxy-alkane-3-one. [9]-gingerol is practically insoluble (in water) and a very weakly acidic compound (based on its pKa). [9]-gingerol can be found in ginger, which makes [9]-gingerol a potential biomarker for the consumption of this food product.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC20H32O4
Average Molecular Weight336.4657
Monoisotopic Molecular Weight336.230059512
IUPAC Name5-hydroxy-1-(4-hydroxy-3-methoxyphenyl)tridecan-3-one
Traditional Name5-hydroxy-1-(4-hydroxy-3-methoxyphenyl)tridecan-3-one
CAS Registry NumberNot Available
SMILES
CCCCCCCCC(O)CC(=O)CCC1=CC=C(O)C(OC)=C1
InChI Identifier
InChI=1S/C20H32O4/c1-3-4-5-6-7-8-9-17(21)15-18(22)12-10-16-11-13-19(23)20(14-16)24-2/h11,13-14,17,21,23H,3-10,12,15H2,1-2H3
InChI KeyPOEQJXMZRAIOBX-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as gingerols. Gingerols are compounds containing a gingerol moiety, which is structurally characterized by a 4-hydroxy-3-methoxyphenyl group substituted at the C6 carbon atom by a 5-hydroxy-alkane-3-one.
KingdomOrganic compounds
Super ClassBenzenoids
ClassPhenols
Sub ClassMethoxyphenols
Direct ParentGingerols
Alternative Parents
Substituents
  • Gingerol
  • Fatty alcohol
  • Phenoxy compound
  • Anisole
  • Methoxybenzene
  • Phenol ether
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Monocyclic benzene moiety
  • Beta-hydroxy ketone
  • Fatty acyl
  • Ketone
  • Secondary alcohol
  • Ether
  • Organic oxide
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxygen compound
  • Alcohol
  • Organooxygen compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP5.03ALOGPS
logP4.95ChemAxon
logS-4.1ALOGPS
pKa (Strongest Acidic)9.95ChemAxon
pKa (Strongest Basic)-2.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area66.76 ŲChemAxon
Rotatable Bond Count13ChemAxon
Refractivity96.91 m³·mol⁻¹ChemAxon
Polarizability40.11 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+189.55632859911
AllCCS[M+H-H2O]+186.70732859911
AllCCS[M+Na]+192.94632859911
AllCCS[M+NH4]+192.1932859911
AllCCS[M-H]-188.94232859911
AllCCS[M+Na-2H]-190.38632859911
AllCCS[M+HCOO]-192.12732859911
DeepCCS[M+H]+192.87130932474
DeepCCS[M-H]-190.51330932474
DeepCCS[M-2H]-223.430932474
DeepCCS[M+Na]+198.96530932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
[9]-Gingerol,3TMS,isomer #1CCCCCCCCC(CC(=CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)O[Si](C)(C)C)O[Si](C)(C)C2830.7Semi standard non polar33892256
[9]-Gingerol,3TMS,isomer #1CCCCCCCCC(CC(=CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)O[Si](C)(C)C)O[Si](C)(C)C2731.9Standard non polar33892256
[9]-Gingerol,3TMS,isomer #1CCCCCCCCC(CC(=CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)O[Si](C)(C)C)O[Si](C)(C)C2959.4Standard polar33892256
[9]-Gingerol,3TMS,isomer #2CCCCCCCCC(C=C(CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)O[Si](C)(C)C)O[Si](C)(C)C2753.7Semi standard non polar33892256
[9]-Gingerol,3TMS,isomer #2CCCCCCCCC(C=C(CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)O[Si](C)(C)C)O[Si](C)(C)C2672.9Standard non polar33892256
[9]-Gingerol,3TMS,isomer #2CCCCCCCCC(C=C(CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)O[Si](C)(C)C)O[Si](C)(C)C2886.8Standard polar33892256
[9]-Gingerol,3TBDMS,isomer #1CCCCCCCCC(CC(=CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3516.7Semi standard non polar33892256
[9]-Gingerol,3TBDMS,isomer #1CCCCCCCCC(CC(=CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3251.3Standard non polar33892256
[9]-Gingerol,3TBDMS,isomer #1CCCCCCCCC(CC(=CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3205.3Standard polar33892256
[9]-Gingerol,3TBDMS,isomer #2CCCCCCCCC(C=C(CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3466.9Semi standard non polar33892256
[9]-Gingerol,3TBDMS,isomer #2CCCCCCCCC(C=C(CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3185.7Standard non polar33892256
[9]-Gingerol,3TBDMS,isomer #2CCCCCCCCC(C=C(CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3139.5Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [9]-Gingerol 10V, Positive-QTOFsplash10-014r-0209000000-f08ee792132b168253e12016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [9]-Gingerol 20V, Positive-QTOFsplash10-01ti-1902000000-590d2a2c9998e93112892016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [9]-Gingerol 40V, Positive-QTOFsplash10-052o-8910000000-cde39bea0355028ad34e2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [9]-Gingerol 10V, Negative-QTOFsplash10-000i-0309000000-99dea1eccd034db8551b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [9]-Gingerol 20V, Negative-QTOFsplash10-000f-0902000000-7a953c075289916c9d742016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [9]-Gingerol 40V, Negative-QTOFsplash10-0a6u-3900000000-515cbc7737911e72bad62016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [9]-Gingerol 10V, Positive-QTOFsplash10-000i-0409000000-75b2ef0d5bd989fac2cc2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [9]-Gingerol 20V, Positive-QTOFsplash10-0uds-1945000000-87b560701c1748042b4f2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [9]-Gingerol 40V, Positive-QTOFsplash10-000i-4900000000-c19a657dfb9021dc0a062021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [9]-Gingerol 10V, Negative-QTOFsplash10-014j-1309000000-3dc10544cb3a6779d9c52021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [9]-Gingerol 20V, Negative-QTOFsplash10-0a4r-4904000000-d11ed03c3f145e5e8a882021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - [9]-Gingerol 40V, Negative-QTOFsplash10-0adu-5900000000-179b33fa5135616acb142021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB007773
KNApSAcK IDNot Available
Chemspider ID59696445
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound24826452
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available