Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 07:14:09 UTC
Update Date2021-09-24 07:14:09 UTC
HMDB IDHMDB0304107
Secondary Accession NumbersNone
Metabolite Identification
Common Name3-(4'-methylthio)butylmalate
Description 3-(4'-methylthio)butylmalate is slightly soluble (in water) and a weakly acidic compound (based on its pKa). 3-(4'-methylthio)butylmalate can be found in a number of food items such as broccoli, yellow zucchini, pepper (spice), and sesbania flower, which makes 3-(4'-methylthio)butylmalate a potential biomarker for the consumption of these food products.
Structure
Thumb
Synonyms
ValueSource
2-Hydroxy-3-[4-(methylsulfanyl)butyl]butanedioic acidGenerator
2-Hydroxy-3-[4-(methylsulphanyl)butyl]butanedioateGenerator
2-Hydroxy-3-[4-(methylsulphanyl)butyl]butanedioic acidGenerator
3-(4'-methylthio)Butylmalic acidMetaCyc, Generator
Chemical FormulaC9H14O5S
Average Molecular Weight234.27
Monoisotopic Molecular Weight234.057291885
IUPAC Name2-hydroxy-3-[4-(methylsulfanyl)butyl]butanedioate
Traditional Name2-hydroxy-3-[4-(methylsulfanyl)butyl]butanedioate
CAS Registry NumberNot Available
SMILES
CSCCCCC(C(O)C([O-])=O)C([O-])=O
InChI Identifier
InChI=1S/C9H16O5S/c1-15-5-3-2-4-6(8(11)12)7(10)9(13)14/h6-7,10H,2-5H2,1H3,(H,11,12)(H,13,14)/p-2
InChI KeyZIZLDVKLMYVMNX-UHFFFAOYSA-L
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain hydroxy acids and derivatives. These are hydroxy acids with a 6 to 12 carbon atoms long side chain.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassHydroxy acids and derivatives
Sub ClassMedium-chain hydroxy acids and derivatives
Direct ParentMedium-chain hydroxy acids and derivatives
Alternative Parents
Substituents
  • Medium-chain hydroxy acid
  • Medium-chain fatty acid
  • Beta-hydroxy acid
  • Branched fatty acid
  • Thia fatty acid
  • Hydroxy fatty acid
  • Fatty acyl
  • Fatty acid
  • Dicarboxylic acid or derivatives
  • Monosaccharide
  • Secondary alcohol
  • Carboxylic acid derivative
  • Dialkylthioether
  • Carboxylic acid
  • Sulfenyl compound
  • Thioether
  • Alcohol
  • Organic oxygen compound
  • Organooxygen compound
  • Organosulfur compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Organic anion
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Source
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP0.74ALOGPS
logP0.96ChemAxon
logS-1.9ALOGPS
pKa (Strongest Acidic)3.83ChemAxon
pKa (Strongest Basic)-4ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area100.49 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity77.54 m³·mol⁻¹ChemAxon
Polarizability23.15 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+151.76432859911
AllCCS[M+H-H2O]+148.34232859911
AllCCS[M+Na]+155.85232859911
AllCCS[M+NH4]+154.93932859911
AllCCS[M-H]-148.76132859911
AllCCS[M+Na-2H]-149.5432859911
AllCCS[M+HCOO]-150.48932859911
DeepCCS[M+H]+147.28330932474
DeepCCS[M-H]-143.8330932474
DeepCCS[M-2H]-179.78530932474
DeepCCS[M+Na]+156.07730932474

Predicted Kovats Retention Indices

Not Available
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB030394
KNApSAcK IDNot Available
Chemspider ID24785430
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound44237164
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available