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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 07:28:51 UTC
Update Date2021-09-24 07:28:51 UTC
HMDB IDHMDB0304136
Secondary Accession NumbersNone
Metabolite Identification
Common Name3-methoxy-4-hydroxy-5-all-trans-hexaprenylbenzoate
Description3-methoxy-4-hydroxy-5-all-trans-hexaprenylbenzoate, also known as 3-hexaprenyl-4-hydroxy-5-methoxybenzoate anion, is a member of the class of compounds known as sesterterpenoids. Sesterterpenoids are terpenes composed of five consecutive isoprene units. 3-methoxy-4-hydroxy-5-all-trans-hexaprenylbenzoate is practically insoluble (in water) and a weakly acidic compound (based on its pKa). 3-methoxy-4-hydroxy-5-all-trans-hexaprenylbenzoate can be found in a number of food items such as borage, apricot, red rice, and buffalo currant, which makes 3-methoxy-4-hydroxy-5-all-trans-hexaprenylbenzoate a potential biomarker for the consumption of these food products.
Structure
Thumb
Synonyms
ValueSource
3-Hexaprenyl-4-hydroxy-5-methoxybenzoate anionChEBI
3-Hexaprenyl-4-hydroxy-5-methoxybenzoate(1-)ChEBI
3-Methoxy-4-hydroxy-5-all-trans-hexaprenylbenzoateChEBI
3-Hexaprenyl-4-hydroxy-5-methoxybenzoic acid anionGenerator
3-Hexaprenyl-4-hydroxy-5-methoxybenzoic acid(1-)Generator
3-Methoxy-4-hydroxy-5-all-trans-hexaprenylbenzoic acidGenerator
3-Hexaprenyl-4-hydroxy-5-methoxybenzoic acidGenerator
Chemical FormulaC38H55O4
Average Molecular Weight575.855
Monoisotopic Molecular Weight575.410583831
IUPAC Name4-carboxy-2-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-6-methoxybenzen-1-olate
Traditional Name4-carboxy-2-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-6-methoxybenzenolate
CAS Registry NumberNot Available
SMILES
[H]\C(CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC1=CC(=CC(OC)=C1[O-])C(O)=O)=C(\C)CCC=C(C)C
InChI Identifier
InChI=1S/C38H56O4/c1-28(2)14-9-15-29(3)16-10-17-30(4)18-11-19-31(5)20-12-21-32(6)22-13-23-33(7)24-25-34-26-35(38(40)41)27-36(42-8)37(34)39/h14,16,18,20,22,24,26-27,39H,9-13,15,17,19,21,23,25H2,1-8H3,(H,40,41)/p-1/b29-16+,30-18+,31-20+,32-22+,33-24+
InChI KeyYSZSVGFMAJXGMQ-FRICUITQSA-M
Chemical Taxonomy
Description Belongs to the class of organic compounds known as sesterterpenoids. These are terpenes composed of five consecutive isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesterterpenoids
Direct ParentSesterterpenoids
Alternative Parents
Substituents
  • Sesterterpenoid
  • M-methoxybenzoic acid or derivatives
  • Benzoic acid or derivatives
  • Benzoic acid
  • Phenoxy compound
  • Anisole
  • Methoxybenzene
  • Phenol ether
  • Benzoyl
  • Alkyl aryl ether
  • Phenoxide
  • Monocyclic benzene moiety
  • Benzenoid
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Carboxylic acid
  • Ether
  • Organooxygen compound
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organic anion
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External Descriptors
Ontology
Not AvailableNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP8.36ALOGPS
logP11.2ChemAxon
logS-6.4ALOGPS
pKa (Strongest Acidic)4.12ChemAxon
pKa (Strongest Basic)-4.9ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area69.59 ŲChemAxon
Rotatable Bond Count19ChemAxon
Refractivity195.56 m³·mol⁻¹ChemAxon
Polarizability71.44 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+247.83332859911
AllCCS[M+H-H2O]+246.36732859911
AllCCS[M+Na]+249.56732859911
AllCCS[M+NH4]+249.18132859911
AllCCS[M-H]-229.91632859911
AllCCS[M+Na-2H]-233.71132859911
AllCCS[M+HCOO]-238.02332859911
DeepCCS[M+H]+250.36830932474
DeepCCS[M-H]-248.35530932474
DeepCCS[M-2H]-281.89330932474
DeepCCS[M+Na]+256.10930932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-methoxy-4-hydroxy-5-all-trans-hexaprenylbenzoate 10V, Negative-QTOFsplash10-056r-0000090000-4c2f8e14fcd993708b5f2019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-methoxy-4-hydroxy-5-all-trans-hexaprenylbenzoate 20V, Negative-QTOFsplash10-0arr-0000090000-9a648eb78438492a01fa2019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-methoxy-4-hydroxy-5-all-trans-hexaprenylbenzoate 40V, Negative-QTOFsplash10-014i-0000490000-9315d22f6babe6e28a052019-02-23Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB030437
KNApSAcK IDNot Available
Chemspider ID20171533
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID57916
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available