Record Information |
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Version | 5.0 |
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Status | Expected but not Quantified |
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Creation Date | 2021-09-24 11:01:54 UTC |
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Update Date | 2021-09-24 11:01:54 UTC |
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HMDB ID | HMDB0304601 |
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Secondary Accession Numbers | None |
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Metabolite Identification |
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Common Name | 2R-Hydroxymethyl-3S-hydroxypyrolidine |
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Description | (2R,3S)-2-(hydroxymethyl)pyrrolidin-3-ol belongs to the class of organic compounds known as pyrrolidines. Pyrrolidines are compounds containing a pyrrolidine ring, which is a five-membered saturated aliphatic heterocycle with one nitrogen atom and four carbon atoms. Based on a literature review very few articles have been published on (2R,3S)-2-(hydroxymethyl)pyrrolidin-3-ol. |
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Structure | InChI=1S/C5H11NO2/c7-3-4-5(8)1-2-6-4/h4-8H,1-3H2/t4-,5+/m1/s1 |
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Synonyms | Value | Source |
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(2R,3S)-3-Hydroxy-2-pyrrolidinemethanol | PhytoBank | (2R,3S)-2-(Hydroxymethyl)-3-hydroxypyrrolidine | PhytoBank | (2R,3S)-2-(Hydroxymethyl)pyrrolidin-3-ol | PhytoBank | (2R,3S)-3-Hydroxy-2-hydroxymethylpyrrolidine | PhytoBank | 2R-Hydroxymethyl-3S-hydroxypyrolidine | PhytoBank | CYB 3 | PhytoBank | CYB-3 | PhytoBank |
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Chemical Formula | C5H11NO2 |
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Average Molecular Weight | 117.148 |
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Monoisotopic Molecular Weight | 117.078978598 |
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IUPAC Name | (2R,3S)-2-(hydroxymethyl)pyrrolidin-3-ol |
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Traditional Name | (2R,3S)-2-(hydroxymethyl)pyrrolidin-3-ol |
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CAS Registry Number | Not Available |
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SMILES | OC[C@H]1NCC[C@@H]1O |
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InChI Identifier | InChI=1S/C5H11NO2/c7-3-4-5(8)1-2-6-4/h4-8H,1-3H2/t4-,5+/m1/s1 |
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InChI Key | TYLFLHPQWQQWRD-UHNVWZDZSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as pyrrolidines. Pyrrolidines are compounds containing a pyrrolidine ring, which is a five-membered saturated aliphatic heterocycle with one nitrogen atom and four carbon atoms. |
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Kingdom | Organic compounds |
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Super Class | Organoheterocyclic compounds |
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Class | Pyrrolidines |
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Sub Class | Not Available |
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Direct Parent | Pyrrolidines |
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Alternative Parents | |
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Substituents | - Pyrrolidine
- Secondary alcohol
- 1,2-aminoalcohol
- Azacycle
- Secondary amine
- Secondary aliphatic amine
- Organic nitrogen compound
- Organic oxygen compound
- Hydrocarbon derivative
- Primary alcohol
- Organooxygen compound
- Organonitrogen compound
- Amine
- Alcohol
- Aliphatic heteromonocyclic compound
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Molecular Framework | Aliphatic heteromonocyclic compounds |
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External Descriptors | Not Available |
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Ontology |
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Physiological effect | Not Available |
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Disposition | |
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Process | Not Available |
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Role | Not Available |
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Physical Properties |
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State | Not Available |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | |
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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2R-Hydroxymethyl-3S-hydroxypyrolidine,3TMS,isomer #1 | C[Si](C)(C)OC[C@@H]1[C@@H](O[Si](C)(C)C)CCN1[Si](C)(C)C | 1430.8 | Semi standard non polar | 33892256 | 2R-Hydroxymethyl-3S-hydroxypyrolidine,3TMS,isomer #1 | C[Si](C)(C)OC[C@@H]1[C@@H](O[Si](C)(C)C)CCN1[Si](C)(C)C | 1538.8 | Standard non polar | 33892256 | 2R-Hydroxymethyl-3S-hydroxypyrolidine,3TMS,isomer #1 | C[Si](C)(C)OC[C@@H]1[C@@H](O[Si](C)(C)C)CCN1[Si](C)(C)C | 1547.5 | Standard polar | 33892256 | 2R-Hydroxymethyl-3S-hydroxypyrolidine,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC[C@@H]1[C@@H](O[Si](C)(C)C(C)(C)C)CCN1[Si](C)(C)C(C)(C)C | 2098.8 | Semi standard non polar | 33892256 | 2R-Hydroxymethyl-3S-hydroxypyrolidine,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC[C@@H]1[C@@H](O[Si](C)(C)C(C)(C)C)CCN1[Si](C)(C)C(C)(C)C | 2166.5 | Standard non polar | 33892256 | 2R-Hydroxymethyl-3S-hydroxypyrolidine,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC[C@@H]1[C@@H](O[Si](C)(C)C(C)(C)C)CCN1[Si](C)(C)C(C)(C)C | 1971.1 | Standard polar | 33892256 |
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| MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2R-Hydroxymethyl-3S-hydroxypyrolidine 10V, Positive-QTOF | splash10-0uxr-1900000000-319a40a1f46562525e7d | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2R-Hydroxymethyl-3S-hydroxypyrolidine 20V, Positive-QTOF | splash10-0ue9-7900000000-4b0d6e4dc71d5c199de3 | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2R-Hydroxymethyl-3S-hydroxypyrolidine 40V, Positive-QTOF | splash10-0f89-9100000000-e75af6b7bb32704c25c9 | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2R-Hydroxymethyl-3S-hydroxypyrolidine 10V, Negative-QTOF | splash10-014i-7900000000-75ce7e90466c2ad50308 | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2R-Hydroxymethyl-3S-hydroxypyrolidine 20V, Negative-QTOF | splash10-014s-9100000000-d8f2bf9e3c4dea1e4850 | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2R-Hydroxymethyl-3S-hydroxypyrolidine 40V, Negative-QTOF | splash10-0673-9000000000-1faa9f8ac284310de0c6 | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2R-Hydroxymethyl-3S-hydroxypyrolidine 10V, Positive-QTOF | splash10-0gb9-2900000000-74c9aa915cf652e90e99 | 2021-10-21 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2R-Hydroxymethyl-3S-hydroxypyrolidine 20V, Positive-QTOF | splash10-001i-9100000000-bbba2afb35f83de5d4e9 | 2021-10-21 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2R-Hydroxymethyl-3S-hydroxypyrolidine 40V, Positive-QTOF | splash10-0006-9000000000-43fe9b66b37e08191056 | 2021-10-21 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2R-Hydroxymethyl-3S-hydroxypyrolidine 10V, Negative-QTOF | splash10-014r-9400000000-ff92445a5bf5947e6cdf | 2021-10-21 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2R-Hydroxymethyl-3S-hydroxypyrolidine 20V, Negative-QTOF | splash10-014i-9000000000-d99c1338ed15d1a687c7 | 2021-10-21 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 2R-Hydroxymethyl-3S-hydroxypyrolidine 40V, Negative-QTOF | splash10-0a4i-9000000000-779893b9335066cefa85 | 2021-10-21 | Wishart Lab | View Spectrum |
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