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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2006-05-22 15:12:30 UTC
Update Date2022-03-07 02:49:17 UTC
HMDB IDHMDB0003063
Secondary Accession Numbers
  • HMDB03063
Metabolite Identification
Common Name(9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene
Description(9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene is a carotenoid found in human fluids. Carotenoids are isoprenoid molecules that are widespread in nature and are typically seen as pigments in fruits, flowers, birds, and crustacea. Animals are unable to synthesize carotenoids de novo, and rely upon the diet as a source of these compounds. Over recent years there has been considerable interest in dietary carotenoids with respect to their potential in alleviating age-related diseases in humans. This attention has been mirrored by significant advances in cloning most of the carotenoid genes and in the genetic manipulation of crop plants with the intention of increasing levels in the diet. Studies have shown an inverse relationship between the consumption of certain fruits and vegetables and the risk of epithelial cancer. Since carotenoids are among the micronutrients found in cancer-preventive foods, detailed qualitative and quantitative determination of these compounds, particularly in fruits and vegetables and in human plasma, have recently become increasingly important (PMID: 1416048 , 15003396 ).
Structure
Data?1592335529
Synonyms
ValueSource
(6E,10Z,12E,14E,16E,18E,20E,22Z,26E)-2,6,10,14,19,23,27,31-Octamethyldotriaconta-2,6,10,12,14,16,18,20,22,26,30-undecaeneChEBI
9,9'-Di-cis-zeta-caroteneKegg
9,9'-Di-cis-Z-caroteneGenerator
9,9'-Di-cis-ζ-caroteneGenerator
(9-cis,9'-cis)-7,7',8,8'-Tetrahydro-ψ,ψ-caroteneHMDB
Ζ-caroteneHMDB
zeta-CaroteneHMDB
Carotene, zetaHMDB
zeta CaroteneHMDB
(9-cis,9'-cis)-7,7',8,8'-tetrahydro-Psi,psi-caroteneChEBI
Chemical FormulaC40H60
Average Molecular Weight540.9044
Monoisotopic Molecular Weight540.46950192
IUPAC Name(6E,10Z,12E,14E,16E,18E,20E,22Z,26E)-2,6,10,14,19,23,27,31-octamethyldotriaconta-2,6,10,12,14,16,18,20,22,26,30-undecaene
Traditional Name9,9'-di-cis-zeta-carotene
CAS Registry Number72746-33-9
SMILES
CC(C)=CCC\C(C)=C\CC\C(C)=C/C=C/C(/C)=C/C=C/C=C(\C)/C=C/C=C(/C)CC\C=C(/C)CCC=C(C)C
InChI Identifier
InChI=1S/C40H60/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-16,19-22,25-30H,13-14,17-18,23-24,31-32H2,1-10H3/b12-11+,25-15+,26-16+,35-21+,36-22+,37-27+,38-28+,39-29-,40-30-
InChI KeyBIWLELKAFXRPDE-ZURBLSRNSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as carotenes. These are a type of unsaturated hydrocarbons containing eight consecutive isoprene units. They are characterized by the presence of two end-groups (mostly cyclohexene rings, but also cyclopentene rings or acyclic groups) linked by a long branched alkyl chain. Carotenes belonging form a subgroup of the carotenoids family.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTetraterpenoids
Direct ParentCarotenes
Alternative Parents
Substituents
  • Carotene
  • Branched unsaturated hydrocarbon
  • Unsaturated aliphatic hydrocarbon
  • Unsaturated hydrocarbon
  • Olefin
  • Acyclic olefin
  • Hydrocarbon
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.00034 g/LALOGPS
logP9.38ALOGPS
logP12.66ChemAxon
logS-6.2ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count18ChemAxon
Refractivity195.57 m³·mol⁻¹ChemAxon
Polarizability71.9 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+240.68731661259
DarkChem[M-H]-234.25531661259
DeepCCS[M+H]+249.95430932474
DeepCCS[M-H]-247.61130932474
DeepCCS[M-2H]-280.85130932474
DeepCCS[M+Na]+255.81830932474
AllCCS[M+H]+240.832859911
AllCCS[M+H-H2O]+239.232859911
AllCCS[M+NH4]+242.232859911
AllCCS[M+Na]+242.732859911
AllCCS[M-H]-232.032859911
AllCCS[M+Na-2H]-234.332859911
AllCCS[M+HCOO]-237.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-caroteneCC(C)=CCC\C(C)=C\CC\C(C)=C/C=C/C(/C)=C/C=C/C=C(\C)/C=C/C=C(/C)CC\C=C(/C)CCC=C(C)C4530.5Standard polar33892256
(9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-caroteneCC(C)=CCC\C(C)=C\CC\C(C)=C/C=C/C(/C)=C/C=C/C=C(\C)/C=C/C=C(/C)CC\C=C(/C)CCC=C(C)C4119.7Standard non polar33892256
(9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-caroteneCC(C)=CCC\C(C)=C\CC\C(C)=C/C=C/C(/C)=C/C=C/C=C(\C)/C=C/C=C(/C)CC\C=C(/C)CCC=C(C)C3887.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene GC-MS (Non-derivatized) - 70eV, Positivesplash10-00n0-5502940000-bb1e3169b0641a886fa42017-09-01Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene 10V, Positive-QTOFsplash10-0006-0332490000-a09870890e26f533a6062017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene 20V, Positive-QTOFsplash10-0k96-2795610000-aedbe8d72f5456cb59f12017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene 40V, Positive-QTOFsplash10-0a4u-3697700000-d9f1d49eaecbe98ae74b2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene 10V, Negative-QTOFsplash10-000i-0000090000-1e259378dd66cfb9ed002017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene 20V, Negative-QTOFsplash10-000i-0000090000-e160245fde556512347f2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene 40V, Negative-QTOFsplash10-00di-1876690000-206990aadbb41604018c2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene 10V, Positive-QTOFsplash10-000f-2234980000-722f244f35ef9812e0052021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene 20V, Positive-QTOFsplash10-00nb-1120900000-e9a6ed7c00be91f8f84e2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene 40V, Positive-QTOFsplash10-06a0-1324900000-69637db0c258d51479812021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene 10V, Negative-QTOFsplash10-000i-0000090000-16666469763966a2b7562021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene 20V, Negative-QTOFsplash10-000i-0152290000-8dacd9b52a7b3351c6722021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (9-cis,9'-cis)-7,7',8,8'-Tetrahydro-psi,psi-carotene 40V, Negative-QTOFsplash10-0600-1401910000-e413cc1fb56991a91fc02021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB112212
KNApSAcK IDC00000934
Chemspider ID4944750
KEGG Compound IDC15857
BioCyc IDCPD-7526
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound6440490
PDB IDNot Available
ChEBI ID48716
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Khachik F, Beecher GR, Goli MB, Lusby WR, Smith JC Jr: Separation and identification of carotenoids and their oxidation products in the extracts of human plasma. Anal Chem. 1992 Sep 15;64(18):2111-22. [PubMed:1416048 ]
  2. Fraser PD, Bramley PM: The biosynthesis and nutritional uses of carotenoids. Prog Lipid Res. 2004 May;43(3):228-65. [PubMed:15003396 ]