Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:34:08 UTC
Update Date2023-02-21 17:19:24 UTC
HMDB IDHMDB0030009
Secondary Accession Numbers
  • HMDB30009
Metabolite Identification
Common Name3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin
Description3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin, also known as 4-(4-methyl-3-pentenyl)-1,2-dithia-4-cyclohexene, belongs to the class of organic compounds known as dithiins. Dithiins are compounds comprising a dithiin ring, which is an unsaturated six-member heterocycle containing four carbon atoms, two sulfur atoms and two double bonds. Based on a literature review very few articles have been published on 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin.
Structure
Data?1676999964
Synonyms
ValueSource
4-(4-Methyl-3-pentenyl)-1,2-dithia-4-cyclohexeneHMDB
Chemical FormulaC10H16S2
Average Molecular Weight200.364
Monoisotopic Molecular Weight200.069341892
IUPAC Name4-(4-methylpent-3-en-1-yl)-3,6-dihydro-1,2-dithiine
Traditional Name4-(4-methylpent-3-en-1-yl)-3,6-dihydro-1,2-dithiine
CAS Registry Number73188-23-5
SMILES
CC(C)=CCCC1=CCSSC1
InChI Identifier
InChI=1S/C10H16S2/c1-9(2)4-3-5-10-6-7-11-12-8-10/h4,6H,3,5,7-8H2,1-2H3
InChI KeyQQBNLTZXJHZJJD-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dithiins. Dithiins are compounds comprising a dithiin ring, which is an unsaturated six-member heterocycle containing four carbon atoms, two sulfur atoms and two double bonds.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassDithiins
Sub ClassNot Available
Direct ParentDithiins
Alternative Parents
Substituents
  • 1,2-dithiin
  • Organic disulfide
  • Hydrocarbon derivative
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility1.13 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.057 g/LALOGPS
logP3.7ALOGPS
logP3.56ChemAxon
logS-3.6ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity63.53 m³·mol⁻¹ChemAxon
Polarizability23.06 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+147.82331661259
DarkChem[M-H]-143.02631661259
DeepCCS[M+H]+144.08530932474
DeepCCS[M-H]-141.55730932474
DeepCCS[M-2H]-177.30330932474
DeepCCS[M+Na]+152.53530932474
AllCCS[M+H]+140.232859911
AllCCS[M+H-H2O]+136.132859911
AllCCS[M+NH4]+144.032859911
AllCCS[M+Na]+145.032859911
AllCCS[M-H]-145.932859911
AllCCS[M+Na-2H]-147.132859911
AllCCS[M+HCOO]-148.432859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiinCC(C)=CCCC1=CCSSC11980.8Standard polar33892256
3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiinCC(C)=CCCC1=CCSSC11606.8Standard non polar33892256
3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiinCC(C)=CCCC1=CCSSC11645.7Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin GC-MS (Non-derivatized) - 70eV, Positivesplash10-01di-9700000000-e48686f9d69163e034aa2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin 10V, Positive-QTOFsplash10-0udi-1690000000-75ca2c2d6d41e89845702015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin 20V, Positive-QTOFsplash10-0fk9-4910000000-2dea345ed9fc6ffafcd72015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin 40V, Positive-QTOFsplash10-0ktf-9200000000-6fd5972a60716859288a2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin 10V, Negative-QTOFsplash10-0frb-0900000000-2406f02e322c8fa793a62015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin 20V, Negative-QTOFsplash10-0ap1-3900000000-e59432a92a64fc2c836e2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin 40V, Negative-QTOFsplash10-0a4i-9500000000-a55854b814ccb79437842015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin 10V, Negative-QTOFsplash10-0002-0900000000-657e95fa0f821cd3353a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin 20V, Negative-QTOFsplash10-0002-0900000000-51ebd313aa5688664b742021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin 40V, Negative-QTOFsplash10-01q9-4900000000-d344c6f3f2ecb42445c12021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin 10V, Positive-QTOFsplash10-0f6t-0950000000-d08b0b59f7272cad6b802021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin 20V, Positive-QTOFsplash10-0a4i-5920000000-2c7f1e3c58f85ce10f022021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,6-Dihydro-4-(4-methyl-3-pentenyl)-1,2-dithiin 40V, Positive-QTOFsplash10-0ayi-9300000000-796e4eca3ff521234f9a2021-09-25Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-03FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB001300
KNApSAcK IDNot Available
Chemspider ID466041
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound534986
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1632821
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .