Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:35:49 UTC
Update Date2022-03-07 02:52:29 UTC
HMDB IDHMDB0030271
Secondary Accession Numbers
  • HMDB30271
Metabolite Identification
Common NameDehydrocarpaine I
DescriptionDehydrocarpaine I belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members. Dehydrocarpaine I has been detected, but not quantified in, fruits and papayas (Carica papaya). This could make dehydrocarpaine I a potential biomarker for the consumption of these foods. Based on a literature review a significant number of articles have been published on Dehydrocarpaine I.
Structure
Thumb
Synonyms
ValueSource
12,13-Didehydrocarpaine, 9ciHMDB
Chemical FormulaC28H48N2O4
Average Molecular Weight476.6917
Monoisotopic Molecular Weight476.361408034
IUPAC Name13,26-dimethyl-2,15-dioxa-12,25-diazatricyclo[22.2.2.2¹¹,¹⁴]triacont-12-ene-3,16-dione
Traditional Name13,26-dimethyl-2,15-dioxa-12,25-diazatricyclo[22.2.2.2¹¹,¹⁴]triacont-12-ene-3,16-dione
CAS Registry Number72362-02-8
SMILES
CC1NC2CCC1OC(=O)CCCCCCCC1CCC(OC(=O)CCCCCCC2)C(C)=N1
InChI Identifier
InChI=1S/C28H48N2O4/c1-21-25-19-17-23(29-21)13-9-5-3-8-12-16-28(32)34-26-20-18-24(30-22(26)2)14-10-6-4-7-11-15-27(31)33-25/h21,23-26,29H,3-20H2,1-2H3
InChI KeyKGQYREIAHMZYSA-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassMacrolides and analogues
Sub ClassNot Available
Direct ParentMacrolides and analogues
Alternative Parents
Substituents
  • Macrolide
  • Tetrahydropyridine
  • Dicarboxylic acid or derivatives
  • Piperidine
  • Amino acid or derivatives
  • Carboxylic acid ester
  • Ketimine
  • Lactone
  • Carboxylic acid derivative
  • Secondary aliphatic amine
  • Oxacycle
  • Azacycle
  • Secondary amine
  • Organoheterocyclic compound
  • Propargyl-type 1,3-dipolar organic compound
  • Organic 1,3-dipolar compound
  • Hydrocarbon derivative
  • Organic oxide
  • Imine
  • Organic nitrogen compound
  • Organonitrogen compound
  • Organooxygen compound
  • Carbonyl group
  • Organic oxygen compound
  • Amine
  • Organopnictogen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.00035 g/LALOGPS
logP5.43ALOGPS
logP6.04ChemAxon
logS-6.1ALOGPS
pKa (Strongest Basic)9.6ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area76.99 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity134.2 m³·mol⁻¹ChemAxon
Polarizability56.77 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+211.84231661259
DarkChem[M-H]-207.44831661259
DeepCCS[M+H]+219.11530932474
DeepCCS[M-H]-216.56530932474
DeepCCS[M-2H]-250.8630932474
DeepCCS[M+Na]+226.21330932474
AllCCS[M+H]+228.432859911
AllCCS[M+H-H2O]+226.632859911
AllCCS[M+NH4]+230.032859911
AllCCS[M+Na]+230.532859911
AllCCS[M-H]-220.132859911
AllCCS[M+Na-2H]-221.832859911
AllCCS[M+HCOO]-223.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Dehydrocarpaine ICC1NC2CCC1OC(=O)CCCCCCCC1CCC(OC(=O)CCCCCCC2)C(C)=N14042.0Standard polar33892256
Dehydrocarpaine ICC1NC2CCC1OC(=O)CCCCCCCC1CCC(OC(=O)CCCCCCC2)C(C)=N13524.6Standard non polar33892256
Dehydrocarpaine ICC1NC2CCC1OC(=O)CCCCCCCC1CCC(OC(=O)CCCCCCC2)C(C)=N13700.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Dehydrocarpaine I,1TMS,isomer #1CC1=NC2CCCCCCCC(=O)OC3CCC(CCCCCCCC(=O)OC1CC2)N([Si](C)(C)C)C3C3878.9Semi standard non polar33892256
Dehydrocarpaine I,1TMS,isomer #1CC1=NC2CCCCCCCC(=O)OC3CCC(CCCCCCCC(=O)OC1CC2)N([Si](C)(C)C)C3C3529.2Standard non polar33892256
Dehydrocarpaine I,1TBDMS,isomer #1CC1=NC2CCCCCCCC(=O)OC3CCC(CCCCCCCC(=O)OC1CC2)N([Si](C)(C)C(C)(C)C)C3C4086.0Semi standard non polar33892256
Dehydrocarpaine I,1TBDMS,isomer #1CC1=NC2CCCCCCCC(=O)OC3CCC(CCCCCCCC(=O)OC1CC2)N([Si](C)(C)C(C)(C)C)C3C3748.0Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Dehydrocarpaine I GC-MS (Non-derivatized) - 70eV, Positivesplash10-01t9-1000900000-81f5aa8bb79a58eb036b2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Dehydrocarpaine I GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine I 10V, Positive-QTOFsplash10-004i-0000900000-c9d5639a6027c226731f2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine I 20V, Positive-QTOFsplash10-004i-0000900000-eb10bb496f74066066bc2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine I 40V, Positive-QTOFsplash10-0a6u-0000900000-80533bfaed58a183f7df2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine I 10V, Negative-QTOFsplash10-004i-0000900000-abe7c036cd7e77f670d72016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine I 20V, Negative-QTOFsplash10-004i-0000900000-c9bf24919480123ba4162016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine I 40V, Negative-QTOFsplash10-0a4l-0000900000-898d2cae5e3fc1e08afb2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine I 10V, Negative-QTOFsplash10-004i-0000900000-08e08a75469a26d544142021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine I 20V, Negative-QTOFsplash10-004i-0000900000-08e08a75469a26d544142021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine I 40V, Negative-QTOFsplash10-0a4i-0000900000-f862e7a5d39a9a2f606b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine I 10V, Positive-QTOFsplash10-004i-0000900000-05050120a4e0808d53342021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine I 20V, Positive-QTOFsplash10-004i-0000900000-05050120a4e0808d53342021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine I 40V, Positive-QTOFsplash10-056r-0000900000-d17fa007f915f05a897d2021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB002102
KNApSAcK IDNot Available
Chemspider ID35013170
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131750991
PDB IDNot Available
ChEBI ID172704
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1818571
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .