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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:40:03 UTC
Update Date2023-02-21 17:19:48 UTC
HMDB IDHMDB0030958
Secondary Accession Numbers
  • HMDB30958
Metabolite Identification
Common Name(Z)-6-Nonenal
Description(Z)-6-Nonenal, also known as (cis)-non-6-enal, belongs to the class of organic compounds known as medium-chain aldehydes. These are an aldehyde with a chain length containing between 6 and 12 carbon atoms (Z)-6-Nonenal is a cantaloupe, cucumber, and green tasting compound (Z)-6-Nonenal has been detected, but not quantified in, several different foods, such as cucumbers (Cucumis sativus), fruits, muskmelons (Cucumis melo), green vegetables, and carrots (Daucus carota ssp. sativus). This could make (Z)-6-nonenal a potential biomarker for the consumption of these foods (Z)-6-Nonenal is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Based on a literature review a significant number of articles have been published on (Z)-6-Nonenal.
Structure
Data?1676999988
Synonyms
ValueSource
(6Z)-6-NonenalChEBI
(cis)-6-NonenalChEBI
(cis)-Non-6-enalChEBI
(Z)-Non-6-enalHMDB
6-cis-NonenalHMDB
cis-6-Nonen-1-alHMDB
cis-6-NonenalHMDB
FEMA 3580HMDB
rac-Glycerol 1-monodecanoateHMDB
Chemical FormulaC9H16O
Average Molecular Weight140.2227
Monoisotopic Molecular Weight140.120115134
IUPAC Name(6Z)-non-6-enal
Traditional Name(6Z)-non-6-enal
CAS Registry Number2277-19-2
SMILES
CC\C=C/CCCCC=O
InChI Identifier
InChI=1S/C9H16O/c1-2-3-4-5-6-7-8-9-10/h3-4,9H,2,5-8H2,1H3/b4-3-
InChI KeyRTNPCOBSXBGDMO-ARJAWSKDSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain aldehydes. These are an aldehyde with a chain length containing between 6 and 12 carbon atoms.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbonyl compounds
Direct ParentMedium-chain aldehydes
Alternative Parents
Substituents
  • Medium-chain aldehyde
  • Alpha-hydrogen aldehyde
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effect
Disposition
ProcessNot Available
Role
Physical Properties
StateLiquid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling Point87.00 °C. @ 19.00 mm HgThe Good Scents Company Information System
Water Solubility204.9 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP3.113 (est)The Good Scents Company Information System
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.12 g/LALOGPS
logP3.21ALOGPS
logP2.62ChemAxon
logS-3.1ALOGPS
pKa (Strongest Acidic)15.51ChemAxon
pKa (Strongest Basic)-6.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area17.07 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity45.07 m³·mol⁻¹ChemAxon
Polarizability17.45 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+135.13631661259
DarkChem[M-H]-130.61331661259
DeepCCS[M+H]+139.73330932474
DeepCCS[M-H]-137.03330932474
DeepCCS[M-2H]-173.44930932474
DeepCCS[M+Na]+148.67830932474
AllCCS[M+H]+135.232859911
AllCCS[M+H-H2O]+131.132859911
AllCCS[M+NH4]+139.032859911
AllCCS[M+Na]+140.132859911
AllCCS[M-H]-138.732859911
AllCCS[M+Na-2H]-141.032859911
AllCCS[M+HCOO]-143.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(Z)-6-NonenalCC\C=C/CCCCC=O1438.8Standard polar33892256
(Z)-6-NonenalCC\C=C/CCCCC=O1083.0Standard non polar33892256
(Z)-6-NonenalCC\C=C/CCCCC=O1117.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(Z)-6-Nonenal,1TMS,isomer #1CC/C=C\CCCC=CO[Si](C)(C)C1308.2Semi standard non polar33892256
(Z)-6-Nonenal,1TMS,isomer #1CC/C=C\CCCC=CO[Si](C)(C)C1249.6Standard non polar33892256
(Z)-6-Nonenal,1TBDMS,isomer #1CC/C=C\CCCC=CO[Si](C)(C)C(C)(C)C1525.9Semi standard non polar33892256
(Z)-6-Nonenal,1TBDMS,isomer #1CC/C=C\CCCC=CO[Si](C)(C)C(C)(C)C1477.9Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (Z)-6-Nonenal GC-MS (Non-derivatized) - 70eV, Positivesplash10-014l-9000000000-feaa022058c10618101f2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (Z)-6-Nonenal GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-6-Nonenal 10V, Positive-QTOFsplash10-0006-1900000000-a780778acb808518663b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-6-Nonenal 20V, Positive-QTOFsplash10-0006-9600000000-2a1a52a0318aab57b7ea2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-6-Nonenal 40V, Positive-QTOFsplash10-052f-9000000000-aa619730bab1895738c72016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-6-Nonenal 10V, Negative-QTOFsplash10-000i-0900000000-f05cd1c5545492a9f8ec2016-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-6-Nonenal 20V, Negative-QTOFsplash10-000i-2900000000-3da83c5f3e4b0fb3e2262016-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-6-Nonenal 40V, Negative-QTOFsplash10-0006-9000000000-b95b8b5c1d0e470d728b2016-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-6-Nonenal 10V, Negative-QTOFsplash10-000i-0900000000-c458f09e6091931ba80e2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-6-Nonenal 20V, Negative-QTOFsplash10-000i-0900000000-1f73d9183ea2d293e02d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-6-Nonenal 40V, Negative-QTOFsplash10-00kf-9000000000-fb716ac1cb48560b9ff42021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-6-Nonenal 10V, Positive-QTOFsplash10-067i-9000000000-cacda6280404b9fef81a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-6-Nonenal 20V, Positive-QTOFsplash10-066u-9000000000-0491a0e94c99768d6b212021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-6-Nonenal 40V, Positive-QTOFsplash10-05mo-9000000000-d41de8942f2e532117d72021-09-22Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-03FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB002937
KNApSAcK IDNot Available
Chemspider ID4515200
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5362720
PDB IDNot Available
ChEBI ID142591
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1031551
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .