Hmdb loader

Showing metabocard for 2-Decenal (HMDB0030999)

Jump To Section:
IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesXML
Show more...Show more...Show more...
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:40:19 UTC
Update Date2023-02-21 17:19:49 UTC
HMDB IDHMDB0030999
Secondary Accession Numbers
  • HMDB30999
Metabolite Identification
Common Name2-Decenal
Description2-Decenal, also known as (e)-2-decenal or t-2-dca, belongs to the class of organic compounds known as medium-chain aldehydes. These are an aldehyde with a chain length containing between 6 and 12 carbon atoms. Thus, 2-decenal is considered to be a fatty aldehyde. 2-Decenal is an aldehydic, fatty, and floral tasting compound. 2-Decenal has been detected, but not quantified in, several different foods, such as herbs and spices, nuts, mung beans (Vigna radiata), breakfast cereal, and carrots (Daucus carota ssp. sativus). This could make 2-decenal a potential biomarker for the consumption of these foods. Based on a literature review a significant number of articles have been published on 2-Decenal.
Structure
Data?1676999989
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0030999 (2-Decenal)

  Mrv0541 05061305392D          

 11 10  0  0  0  0            999 V2000
    1.0461    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7618    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763    2.6664    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  2  0  0  0  0
 10  9  1  0  0  0  0
 11 10  2  0  0  0  0
M  END
Download

3D MOL for HMDB0030999 (2-Decenal)

HMDB0030999
     RDKit          3D
2-Decenal
 29 28  0  0  0  0  0  0  0  0999 V2000
    4.5472   -0.2959    0.3906 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0437   -0.4872    0.2885 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4046    0.8493    0.4815 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8935    0.7937    0.4019 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4345    0.2848   -0.9288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0598    0.2344   -1.0322 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6925   -0.6546   -0.0191 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1529   -0.6189   -0.2448 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9453   -0.2024    0.7090 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3873   -0.1478    0.5384 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9130   -0.5043   -0.5439 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7586   -0.2012    1.4927 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7779    0.7133   -0.0263 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1169   -1.1039   -0.0818 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6781   -1.1944    1.0751 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8583   -0.9220   -0.7148 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8304    1.5897   -0.2219 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6676    1.2040    1.5006 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5116    0.1149    1.1947 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5149    1.8075    0.6163 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8529   -0.7426   -1.0410 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7881    0.9602   -1.7410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4625    1.2702   -0.9579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2877   -0.1849   -2.0570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2779   -1.6808   -0.1201 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4398   -0.2554    1.0075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5391   -0.9350   -1.1869 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5009    0.1086    1.6499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0202    0.2008    1.3435 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
  1 12  1  0
  1 13  1  0
  1 14  1  0
  2 15  1  0
  2 16  1  0
  3 17  1  0
  3 18  1  0
  4 19  1  0
  4 20  1  0
  5 21  1  0
  5 22  1  0
  6 23  1  0
  6 24  1  0
  7 25  1  0
  7 26  1  0
  8 27  1  0
  9 28  1  0
 10 29  1  0
M  END
Download

3D SDF for HMDB0030999 (2-Decenal)

  Mrv0541 05061305392D          

 11 10  0  0  0  0            999 V2000
    1.0461    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7618    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763    2.6664    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  2  0  0  0  0
 10  9  1  0  0  0  0
 11 10  2  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0030999

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCC\C=C\C=O

> <INCHI_IDENTIFIER>
InChI=1S/C10H18O/c1-2-3-4-5-6-7-8-9-10-11/h8-10H,2-7H2,1H3/b9-8+

> <INCHI_KEY>
MMFCJPPRCYDLLZ-CMDGGOBGSA-N

> <FORMULA>
C10H18O

> <MOLECULAR_WEIGHT>
154.2493

> <EXACT_MASS>
154.135765198

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_AVERAGE_POLARIZABILITY>
19.81742766916185

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E)-dec-2-enal

> <ALOGPS_LOGP>
4.32

> <JCHEM_LOGP>
3.4283780249999993

> <ALOGPS_LOGS>
-3.87

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.203792945065049

> <JCHEM_POLAR_SURFACE_AREA>
17.07

> <JCHEM_REFRACTIVITY>
49.645500000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.06e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-decenal

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for HMDB0030999 (2-Decenal)

HMDB0030999
     RDKit          3D
2-Decenal
 29 28  0  0  0  0  0  0  0  0999 V2000
    4.5472   -0.2959    0.3906 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0437   -0.4872    0.2885 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4046    0.8493    0.4815 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8935    0.7937    0.4019 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4345    0.2848   -0.9288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0598    0.2344   -1.0322 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6925   -0.6546   -0.0191 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1529   -0.6189   -0.2448 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9453   -0.2024    0.7090 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3873   -0.1478    0.5384 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9130   -0.5043   -0.5439 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7586   -0.2012    1.4927 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7779    0.7133   -0.0263 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1169   -1.1039   -0.0818 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6781   -1.1944    1.0751 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8583   -0.9220   -0.7148 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8304    1.5897   -0.2219 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6676    1.2040    1.5006 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5116    0.1149    1.1947 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5149    1.8075    0.6163 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8529   -0.7426   -1.0410 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7881    0.9602   -1.7410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4625    1.2702   -0.9579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2877   -0.1849   -2.0570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2779   -1.6808   -0.1201 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4398   -0.2554    1.0075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5391   -0.9350   -1.1869 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5009    0.1086    1.6499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0202    0.2008    1.3435 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
  1 12  1  0
  1 13  1  0
  1 14  1  0
  2 15  1  0
  2 16  1  0
  3 17  1  0
  3 18  1  0
  4 19  1  0
  4 20  1  0
  5 21  1  0
  5 22  1  0
  6 23  1  0
  6 24  1  0
  7 25  1  0
  7 26  1  0
  8 27  1  0
  9 28  1  0
 10 29  1  0
M  END
Download

PDB for HMDB0030999 (2-Decenal)

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       1.953   2.667   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.286   3.437   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.287   2.667   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.621   3.437   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.955   2.667   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      11.288   3.437   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      12.622   2.667   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.956   3.437   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      13.956   4.977   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10                                                            
MASTER        0    0    0    0    0    0    0    0   11    0   20    0
END
Download

3D PDB for HMDB0030999 (2-Decenal)

COMPND    HMDB0030999
HETATM    1  C1  UNL     1       4.547  -0.296   0.391  1.00  0.00           C  
HETATM    2  C2  UNL     1       3.044  -0.487   0.289  1.00  0.00           C  
HETATM    3  C3  UNL     1       2.405   0.849   0.482  1.00  0.00           C  
HETATM    4  C4  UNL     1       0.893   0.794   0.402  1.00  0.00           C  
HETATM    5  C5  UNL     1       0.434   0.285  -0.929  1.00  0.00           C  
HETATM    6  C6  UNL     1      -1.060   0.234  -1.032  1.00  0.00           C  
HETATM    7  C7  UNL     1      -1.693  -0.655  -0.019  1.00  0.00           C  
HETATM    8  C8  UNL     1      -3.153  -0.619  -0.245  1.00  0.00           C  
HETATM    9  C9  UNL     1      -3.945  -0.202   0.709  1.00  0.00           C  
HETATM   10  C10 UNL     1      -5.387  -0.148   0.538  1.00  0.00           C  
HETATM   11  O1  UNL     1      -5.913  -0.504  -0.544  1.00  0.00           O  
HETATM   12  H1  UNL     1       4.759  -0.201   1.493  1.00  0.00           H  
HETATM   13  H2  UNL     1       4.778   0.713  -0.026  1.00  0.00           H  
HETATM   14  H3  UNL     1       5.117  -1.104  -0.082  1.00  0.00           H  
HETATM   15  H4  UNL     1       2.678  -1.194   1.075  1.00  0.00           H  
HETATM   16  H5  UNL     1       2.858  -0.922  -0.715  1.00  0.00           H  
HETATM   17  H6  UNL     1       2.830   1.590  -0.222  1.00  0.00           H  
HETATM   18  H7  UNL     1       2.668   1.204   1.501  1.00  0.00           H  
HETATM   19  H8  UNL     1       0.512   0.115   1.195  1.00  0.00           H  
HETATM   20  H9  UNL     1       0.515   1.808   0.616  1.00  0.00           H  
HETATM   21  H10 UNL     1       0.853  -0.743  -1.041  1.00  0.00           H  
HETATM   22  H11 UNL     1       0.788   0.960  -1.741  1.00  0.00           H  
HETATM   23  H12 UNL     1      -1.462   1.270  -0.958  1.00  0.00           H  
HETATM   24  H13 UNL     1      -1.288  -0.185  -2.057  1.00  0.00           H  
HETATM   25  H14 UNL     1      -1.278  -1.681  -0.120  1.00  0.00           H  
HETATM   26  H15 UNL     1      -1.440  -0.255   1.008  1.00  0.00           H  
HETATM   27  H16 UNL     1      -3.539  -0.935  -1.187  1.00  0.00           H  
HETATM   28  H17 UNL     1      -3.501   0.109   1.650  1.00  0.00           H  
HETATM   29  H18 UNL     1      -6.020   0.201   1.343  1.00  0.00           H  
CONECT    1    2   12   13   14
CONECT    2    3   15   16
CONECT    3    4   17   18
CONECT    4    5   19   20
CONECT    5    6   21   22
CONECT    6    7   23   24
CONECT    7    8   25   26
CONECT    8    9    9   27
CONECT    9   10   28
CONECT   10   11   11   29
END
Download

SMILES for HMDB0030999 (2-Decenal)

CCCCCCC\C=C\C=O
Download

INCHI for HMDB0030999 (2-Decenal)

InChI=1S/C10H18O/c1-2-3-4-5-6-7-8-9-10-11/h8-10H,2-7H2,1H3/b9-8+
Download
View in JSmolView Stereo Labels
Synonyms
ValueSource
(2E)-DecenalChEBI
(e)-2-DecenalChEBI
t-2-DCAChEBI
trans-2-DecenalChEBI
trans-Dec-2-enalChEBI
Dec-2-enalHMDB
FEMA 2366HMDB
DecenalMeSH
Chemical FormulaC10H18O
Average Molecular Weight154.2493
Monoisotopic Molecular Weight154.135765198
IUPAC Name(2E)-dec-2-enal
Traditional Name2-decenal
CAS Registry Number3913-71-1
SMILES
CCCCCCC\C=C\C=O
InChI Identifier
InChI=1S/C10H18O/c1-2-3-4-5-6-7-8-9-10-11/h8-10H,2-7H2,1H3/b9-8+
InChI KeyMMFCJPPRCYDLLZ-CMDGGOBGSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain aldehydes. These are an aldehyde with a chain length containing between 6 and 12 carbon atoms.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbonyl compounds
Direct ParentMedium-chain aldehydes
Alternative Parents
Substituents
  • Medium-chain aldehyde
  • Enal
  • Alpha,beta-unsaturated aldehyde
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effect
Organoleptic effect
Disposition
Biological locationRoute of exposureSource
ProcessNot Available
Role
Industrial application
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting Point-8.92 °C. @ 760.00 mm HgThe Good Scents Company Information System
Boiling Point78.00 to 80.00 °C. @ 3.00 mm HgThe Good Scents Company Information System
Water Solubility67.82 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP3.828 (est)The Good Scents Company Information System
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB002987
KNApSAcK IDC00029330
Chemspider ID4446466
KEGG Compound IDNot Available
BioCyc IDCPD-13003
BiGG IDNot Available
Wikipedia Link2-Decenal
METLIN IDNot Available
PubChem Compound5283345
PDB IDNot Available
ChEBI ID133455
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1007761
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .