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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:42:13 UTC
Update Date2022-03-07 02:52:55 UTC
HMDB IDHMDB0031304
Secondary Accession Numbers
  • HMDB31304
Metabolite Identification
Common NameOsmundalin
DescriptionOsmundalin belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond. Based on a literature review very few articles have been published on Osmundalin.
Structure
Data?1563862107
SynonymsNot Available
Chemical FormulaC12H18O8
Average Molecular Weight290.2665
Monoisotopic Molecular Weight290.100167552
IUPAC Name6-methyl-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-2H-pyran-2-one
Traditional Name6-methyl-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydropyran-2-one
CAS Registry Number54835-71-1
SMILES
CC1OC(=O)C=CC1OC1OC(CO)C(O)C(O)C1O
InChI Identifier
InChI=1S/C12H18O8/c1-5-6(2-3-8(14)18-5)19-12-11(17)10(16)9(15)7(4-13)20-12/h2-3,5-7,9-13,15-17H,4H2,1H3
InChI KeyKZOPXYPPFZYEHT-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentO-glycosyl compounds
Alternative Parents
Substituents
  • O-glycosyl compound
  • Dihydropyranone
  • Monosaccharide
  • Oxane
  • Pyran
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Lactone
  • Carboxylic acid ester
  • Secondary alcohol
  • Acetal
  • Polyol
  • Organoheterocyclic compound
  • Oxacycle
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Primary alcohol
  • Hydrocarbon derivative
  • Organic oxide
  • Carbonyl group
  • Alcohol
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point172.5 - 173.5 °CNot Available
Boiling PointNot AvailableNot Available
Water Solubility1000000 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility115 g/LALOGPS
logP-1.7ALOGPS
logP-1.4ChemAxon
logS-0.4ALOGPS
pKa (Strongest Acidic)12.21ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area125.68 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity64.04 m³·mol⁻¹ChemAxon
Polarizability27.56 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+166.90731661259
DarkChem[M-H]-163.01931661259
DeepCCS[M+H]+168.08330932474
DeepCCS[M-H]-165.72530932474
DeepCCS[M-2H]-198.7130932474
DeepCCS[M+Na]+174.17630932474
AllCCS[M+H]+168.832859911
AllCCS[M+H-H2O]+165.432859911
AllCCS[M+NH4]+172.032859911
AllCCS[M+Na]+172.932859911
AllCCS[M-H]-165.032859911
AllCCS[M+Na-2H]-164.932859911
AllCCS[M+HCOO]-165.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
OsmundalinCC1OC(=O)C=CC1OC1OC(CO)C(O)C(O)C1O3673.7Standard polar33892256
OsmundalinCC1OC(=O)C=CC1OC1OC(CO)C(O)C(O)C1O2370.8Standard non polar33892256
OsmundalinCC1OC(=O)C=CC1OC1OC(CO)C(O)C(O)C1O2529.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Osmundalin,1TMS,isomer #1CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C)C(O)C(O)C1O2562.8Semi standard non polar33892256
Osmundalin,1TMS,isomer #2CC1OC(=O)C=CC1OC1OC(CO)C(O[Si](C)(C)C)C(O)C1O2565.2Semi standard non polar33892256
Osmundalin,1TMS,isomer #3CC1OC(=O)C=CC1OC1OC(CO)C(O)C(O[Si](C)(C)C)C1O2548.2Semi standard non polar33892256
Osmundalin,1TMS,isomer #4CC1OC(=O)C=CC1OC1OC(CO)C(O)C(O)C1O[Si](C)(C)C2547.8Semi standard non polar33892256
Osmundalin,2TMS,isomer #1CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O)C1O2560.0Semi standard non polar33892256
Osmundalin,2TMS,isomer #2CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C)C(O)C(O[Si](C)(C)C)C1O2562.9Semi standard non polar33892256
Osmundalin,2TMS,isomer #3CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C)C(O)C(O)C1O[Si](C)(C)C2542.2Semi standard non polar33892256
Osmundalin,2TMS,isomer #4CC1OC(=O)C=CC1OC1OC(CO)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O2551.0Semi standard non polar33892256
Osmundalin,2TMS,isomer #5CC1OC(=O)C=CC1OC1OC(CO)C(O[Si](C)(C)C)C(O)C1O[Si](C)(C)C2546.6Semi standard non polar33892256
Osmundalin,2TMS,isomer #6CC1OC(=O)C=CC1OC1OC(CO)C(O)C(O[Si](C)(C)C)C1O[Si](C)(C)C2553.9Semi standard non polar33892256
Osmundalin,3TMS,isomer #1CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O2534.4Semi standard non polar33892256
Osmundalin,3TMS,isomer #2CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O)C1O[Si](C)(C)C2515.2Semi standard non polar33892256
Osmundalin,3TMS,isomer #3CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C)C(O)C(O[Si](C)(C)C)C1O[Si](C)(C)C2507.8Semi standard non polar33892256
Osmundalin,3TMS,isomer #4CC1OC(=O)C=CC1OC1OC(CO)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O[Si](C)(C)C2527.5Semi standard non polar33892256
Osmundalin,4TMS,isomer #1CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C1O[Si](C)(C)C2463.6Semi standard non polar33892256
Osmundalin,1TBDMS,isomer #1CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O)C1O2826.8Semi standard non polar33892256
Osmundalin,1TBDMS,isomer #2CC1OC(=O)C=CC1OC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O)C1O2824.7Semi standard non polar33892256
Osmundalin,1TBDMS,isomer #3CC1OC(=O)C=CC1OC1OC(CO)C(O)C(O[Si](C)(C)C(C)(C)C)C1O2820.3Semi standard non polar33892256
Osmundalin,1TBDMS,isomer #4CC1OC(=O)C=CC1OC1OC(CO)C(O)C(O)C1O[Si](C)(C)C(C)(C)C2817.1Semi standard non polar33892256
Osmundalin,2TBDMS,isomer #1CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O)C1O3029.3Semi standard non polar33892256
Osmundalin,2TBDMS,isomer #2CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O[Si](C)(C)C(C)(C)C)C1O3037.4Semi standard non polar33892256
Osmundalin,2TBDMS,isomer #3CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O)C1O[Si](C)(C)C(C)(C)C3012.7Semi standard non polar33892256
Osmundalin,2TBDMS,isomer #4CC1OC(=O)C=CC1OC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O3023.4Semi standard non polar33892256
Osmundalin,2TBDMS,isomer #5CC1OC(=O)C=CC1OC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O)C1O[Si](C)(C)C(C)(C)C3015.9Semi standard non polar33892256
Osmundalin,2TBDMS,isomer #6CC1OC(=O)C=CC1OC1OC(CO)C(O)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C3027.0Semi standard non polar33892256
Osmundalin,3TBDMS,isomer #1CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O3233.6Semi standard non polar33892256
Osmundalin,3TBDMS,isomer #2CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O)C1O[Si](C)(C)C(C)(C)C3217.8Semi standard non polar33892256
Osmundalin,3TBDMS,isomer #3CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C(C)(C)C)C(O)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C3219.5Semi standard non polar33892256
Osmundalin,3TBDMS,isomer #4CC1OC(=O)C=CC1OC1OC(CO)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C3211.2Semi standard non polar33892256
Osmundalin,4TBDMS,isomer #1CC1OC(=O)C=CC1OC1OC(CO[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C3414.0Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Osmundalin GC-MS (Non-derivatized) - 70eV, Positivesplash10-05fr-9560000000-410c93e2cf1954c37d9a2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Osmundalin GC-MS (4 TMS) - 70eV, Positivesplash10-03di-3111390000-32b9560722cfe7019c992017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Osmundalin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Osmundalin 10V, Positive-QTOFsplash10-004l-1970000000-15967bb16bdd29d4f19b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Osmundalin 20V, Positive-QTOFsplash10-004i-6910000000-23a1cf95685d33cacc902016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Osmundalin 40V, Positive-QTOFsplash10-03mr-9700000000-fce84c3f19691a58474b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Osmundalin 10V, Negative-QTOFsplash10-002r-3590000000-6762ec4f7d4730254f7e2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Osmundalin 20V, Negative-QTOFsplash10-004i-5920000000-fca7ce4a3f02b405558f2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Osmundalin 40V, Negative-QTOFsplash10-003u-9300000000-f33f45e8032a75a4d0542016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Osmundalin 10V, Negative-QTOFsplash10-000i-0490000000-014b9b99c443fc37e6ee2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Osmundalin 20V, Negative-QTOFsplash10-054y-9640000000-603545bf490346c27cd52021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Osmundalin 40V, Negative-QTOFsplash10-052f-9100000000-d2513fa80ad37733c6e92021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Osmundalin 10V, Positive-QTOFsplash10-01tc-0940000000-3e4a9245a0e0dce037eb2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Osmundalin 20V, Positive-QTOFsplash10-0204-5920000000-8154828c0922899d24052021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Osmundalin 40V, Positive-QTOFsplash10-00ke-9620000000-da417e455b0dd036738b2021-09-22Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB003356
KNApSAcK IDC00048034
Chemspider ID4416908
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5249536
PDB IDNot Available
ChEBI ID169101
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1825701
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .