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Showing metabocard for 2-Methoxy-3-methylpyrazine (HMDB0031852)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:45:58 UTC
Update Date2023-02-21 17:21:23 UTC
HMDB IDHMDB0031852
Secondary Accession Numbers
  • HMDB31852
Metabolite Identification
Common Name2-Methoxy-3-methylpyrazine
Description2-Methoxy-3-methylpyrazine belongs to the class of organic compounds known as methoxypyrazines. These are pyrazines containing a methoxyl group attached to the pyrazine ring. 2-Methoxy-3-methylpyrazine has been detected, but not quantified in, burdocks (Arctium lappa) and fenugreeks (Trigonella foenum-graecum). This could make 2-methoxy-3-methylpyrazine a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on 2-Methoxy-3-methylpyrazine.
Structure
Data?1677000083
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0031852 (2-Methoxy-3-methylpyrazine)

  Mrv1652304272018432D          

  9  9  0  0  0  0            999 V2000
   -0.8250    1.4290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0625   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125    0.7145    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7145    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  5  1  0  0  0  0
  2  9  1  0  0  0  0
  3  4  2  0  0  0  0
  3  7  1  0  0  0  0
  4  8  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  2  0  0  0  0
  6  8  2  0  0  0  0
  6  9  1  0  0  0  0
M  END
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3D MOL for HMDB0031852 (2-Methoxy-3-methylpyrazine)

HMDB0031852
     RDKit          3D
2-Methoxy-3-methylpyrazine
 17 17  0  0  0  0  0  0  0  0999 V2000
   -2.2974    1.3680   -0.5373 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5223    0.2641   -0.2227 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1528    0.2411   -0.0659 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6415    1.3153   -0.2002 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9873    1.2354   -0.0342 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5650    0.0422    0.2770 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7949   -1.0567    0.4190 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4463   -0.9533    0.2479 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3861   -2.1668    0.4067 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9250    1.2610   -1.4426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6391    2.2714   -0.6207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9720    1.5659    0.3451 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6305    2.0997   -0.1418 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6283   -0.0553    0.4152 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1029   -2.9568    1.0046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3402   -1.9065    0.9032 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5618   -2.5687   -0.6305 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  8  3  1  0
  1 10  1  0
  1 11  1  0
  1 12  1  0
  5 13  1  0
  6 14  1  0
  9 15  1  0
  9 16  1  0
  9 17  1  0
M  END
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3D SDF for HMDB0031852 (2-Methoxy-3-methylpyrazine)

  Mrv1652304272018432D          

  9  9  0  0  0  0            999 V2000
   -0.8250    1.4290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0625   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125    0.7145    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7145    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  5  1  0  0  0  0
  2  9  1  0  0  0  0
  3  4  2  0  0  0  0
  3  7  1  0  0  0  0
  4  8  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  2  0  0  0  0
  6  8  2  0  0  0  0
  6  9  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0031852

> <DATABASE_NAME>
hmdb

> <SMILES>
COC1=NC=CN=C1C

> <INCHI_IDENTIFIER>
InChI=1S/C6H8N2O/c1-5-6(9-2)8-4-3-7-5/h3-4H,1-2H3

> <INCHI_KEY>
VKJIAEQRKBQLLA-UHFFFAOYSA-N

> <FORMULA>
C6H8N2O

> <MOLECULAR_WEIGHT>
124.1405

> <EXACT_MASS>
124.063662888

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
17

> <JCHEM_AVERAGE_POLARIZABILITY>
12.576803971982622

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-methoxy-3-methylpyrazine

> <ALOGPS_LOGP>
1.09

> <JCHEM_LOGP>
0.10605739533333315

> <ALOGPS_LOGS>
0.24

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
1.2067085488119742

> <JCHEM_POLAR_SURFACE_AREA>
35.010000000000005

> <JCHEM_REFRACTIVITY>
33.112399999999994

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.13e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
pyrazine, 2-methoxy-3-methyl-

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for HMDB0031852 (2-Methoxy-3-methylpyrazine)

HMDB0031852
     RDKit          3D
2-Methoxy-3-methylpyrazine
 17 17  0  0  0  0  0  0  0  0999 V2000
   -2.2974    1.3680   -0.5373 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5223    0.2641   -0.2227 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1528    0.2411   -0.0659 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6415    1.3153   -0.2002 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9873    1.2354   -0.0342 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5650    0.0422    0.2770 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7949   -1.0567    0.4190 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4463   -0.9533    0.2479 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3861   -2.1668    0.4067 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9250    1.2610   -1.4426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6391    2.2714   -0.6207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9720    1.5659    0.3451 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6305    2.0997   -0.1418 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6283   -0.0553    0.4152 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1029   -2.9568    1.0046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3402   -1.9065    0.9032 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5618   -2.5687   -0.6305 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  8  3  1  0
  1 10  1  0
  1 11  1  0
  1 12  1  0
  5 13  1  0
  6 14  1  0
  9 15  1  0
  9 16  1  0
  9 17  1  0
M  END
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PDB for HMDB0031852 (2-Methoxy-3-methylpyrazine)

HEADER    PROTEIN                                 27-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-APR-20         0                                  
HETATM    1  C   UNK     0      -1.540   2.667   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.850  -1.334   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.770  -1.334   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.770   1.334   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.540   0.000   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       0.770   1.334   0.000  0.00  0.00           N+0
HETATM    8  N   UNK     0      -0.770  -1.334   0.000  0.00  0.00           N+0
HETATM    9  O   UNK     0      -3.080   0.000   0.000  0.00  0.00           O+0
CONECT    1    5                                                            
CONECT    2    9                                                            
CONECT    3    4    7                                                       
CONECT    4    3    8                                                       
CONECT    5    1    6    7                                                  
CONECT    6    5    8    9                                                  
CONECT    7    3    5                                                       
CONECT    8    4    6                                                       
CONECT    9    2    6                                                       
MASTER        0    0    0    0    0    0    0    0    9    0   18    0
END
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3D PDB for HMDB0031852 (2-Methoxy-3-methylpyrazine)

COMPND    HMDB0031852
HETATM    1  C1  UNL     1      -2.297   1.368  -0.537  1.00  0.00           C  
HETATM    2  O1  UNL     1      -1.522   0.264  -0.223  1.00  0.00           O  
HETATM    3  C2  UNL     1      -0.153   0.241  -0.066  1.00  0.00           C  
HETATM    4  N1  UNL     1       0.642   1.315  -0.200  1.00  0.00           N  
HETATM    5  C3  UNL     1       1.987   1.235  -0.034  1.00  0.00           C  
HETATM    6  C4  UNL     1       2.565   0.042   0.277  1.00  0.00           C  
HETATM    7  N2  UNL     1       1.795  -1.057   0.419  1.00  0.00           N  
HETATM    8  C5  UNL     1       0.446  -0.953   0.248  1.00  0.00           C  
HETATM    9  C6  UNL     1      -0.386  -2.167   0.407  1.00  0.00           C  
HETATM   10  H1  UNL     1      -2.925   1.261  -1.443  1.00  0.00           H  
HETATM   11  H2  UNL     1      -1.639   2.271  -0.621  1.00  0.00           H  
HETATM   12  H3  UNL     1      -2.972   1.566   0.345  1.00  0.00           H  
HETATM   13  H4  UNL     1       2.630   2.100  -0.142  1.00  0.00           H  
HETATM   14  H5  UNL     1       3.628  -0.055   0.415  1.00  0.00           H  
HETATM   15  H6  UNL     1       0.103  -2.957   1.005  1.00  0.00           H  
HETATM   16  H7  UNL     1      -1.340  -1.906   0.903  1.00  0.00           H  
HETATM   17  H8  UNL     1      -0.562  -2.569  -0.630  1.00  0.00           H  
CONECT    1    2   10   11   12
CONECT    2    3
CONECT    3    4    4    8
CONECT    4    5
CONECT    5    6    6   13
CONECT    6    7   14
CONECT    7    8    8
CONECT    8    9
CONECT    9   15   16   17
END
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SMILES for HMDB0031852 (2-Methoxy-3-methylpyrazine)

COC1=NC=CN=C1C
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INCHI for HMDB0031852 (2-Methoxy-3-methylpyrazine)

InChI=1S/C6H8N2O/c1-5-6(9-2)8-4-3-7-5/h3-4H,1-2H3
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View in JSmolView Stereo Labels
Synonyms
ValueSource
MethoxymethylpyrazineHMDB
Pyrazine, 2-methyl-3-methoxyHMDB
Chemical FormulaC6H8N2O
Average Molecular Weight124.1405
Monoisotopic Molecular Weight124.063662888
IUPAC Name2-methoxy-3-methylpyrazine
Traditional Namepyrazine, 2-methoxy-3-methyl-
CAS Registry NumberNot Available
SMILES
COC1=NC=CN=C1C
InChI Identifier
InChI=1S/C6H8N2O/c1-5-6(9-2)8-4-3-7-5/h3-4H,1-2H3
InChI KeyVKJIAEQRKBQLLA-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as methoxypyrazines. These are pyrazines containing a methoxyl group attached to the pyrazine ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassDiazines
Sub ClassPyrazines
Direct ParentMethoxypyrazines
Alternative Parents
Substituents
  • Methoxypyrazine
  • Alkyl aryl ether
  • Heteroaromatic compound
  • Azacycle
  • Ether
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationRoute of exposureSource
ProcessNot Available
Role
Industrial application
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogP1.24Not Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB008536
KNApSAcK IDNot Available
Chemspider ID16906
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound17898
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .