Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:51:04 UTC
Update Date2022-03-07 02:53:25 UTC
HMDB IDHMDB0032665
Secondary Accession Numbers
  • HMDB32665
Metabolite Identification
Common NameLicoagrocarpin
DescriptionLicoagrocarpin belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids. Based on a literature review very few articles have been published on Licoagrocarpin.
Structure
Data?1563862289
Synonyms
ValueSource
3-Hydroxy-9-methoxy-4-prenylpterocarpanHMDB
Chemical FormulaC21H22O4
Average Molecular Weight338.397
Monoisotopic Molecular Weight338.151809192
IUPAC Name14-methoxy-6-(3-methylbut-2-en-1-yl)-8,17-dioxatetracyclo[8.7.0.0²,⁷.0¹¹,¹⁶]heptadeca-2(7),3,5,11(16),12,14-hexaen-5-ol
Traditional Name14-methoxy-6-(3-methylbut-2-en-1-yl)-8,17-dioxatetracyclo[8.7.0.0²,⁷.0¹¹,¹⁶]heptadeca-2(7),3,5,11(16),12,14-hexaen-5-ol
CAS Registry Number202815-29-0
SMILES
COC1=CC2=C(C=C1)C1COC3=C(C=CC(O)=C3CC=C(C)C)C1O2
InChI Identifier
InChI=1S/C21H22O4/c1-12(2)4-6-15-18(22)9-8-16-20(15)24-11-17-14-7-5-13(23-3)10-19(14)25-21(16)17/h4-5,7-10,17,21-22H,6,11H2,1-3H3
InChI KeyNYWUHXBEDBSRQB-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassIsoflavonoids
Sub ClassFuranoisoflavonoids
Direct ParentPterocarpans
Alternative Parents
Substituents
  • Pterocarpan
  • Isoflavanol
  • Isoflavan
  • Chromane
  • 1-benzopyran
  • Benzopyran
  • Coumaran
  • Benzofuran
  • Anisole
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Benzenoid
  • Oxacycle
  • Organoheterocyclic compound
  • Ether
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0058 g/LALOGPS
logP3.94ALOGPS
logP4.24ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)9.22ChemAxon
pKa (Strongest Basic)-4.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area47.92 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity97.3 m³·mol⁻¹ChemAxon
Polarizability37.5 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+181.62531661259
DarkChem[M-H]-183.75131661259
DeepCCS[M+H]+183.16330932474
DeepCCS[M-H]-180.80530932474
DeepCCS[M-2H]-214.9330932474
DeepCCS[M+Na]+190.15730932474
AllCCS[M+H]+183.932859911
AllCCS[M+H-H2O]+180.732859911
AllCCS[M+NH4]+186.932859911
AllCCS[M+Na]+187.832859911
AllCCS[M-H]-187.232859911
AllCCS[M+Na-2H]-186.832859911
AllCCS[M+HCOO]-186.432859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
LicoagrocarpinCOC1=CC2=C(C=C1)C1COC3=C(C=CC(O)=C3CC=C(C)C)C1O23852.3Standard polar33892256
LicoagrocarpinCOC1=CC2=C(C=C1)C1COC3=C(C=CC(O)=C3CC=C(C)C)C1O22771.6Standard non polar33892256
LicoagrocarpinCOC1=CC2=C(C=C1)C1COC3=C(C=CC(O)=C3CC=C(C)C)C1O22976.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Licoagrocarpin,1TMS,isomer #1COC1=CC=C2C(=C1)OC1C3=CC=C(O[Si](C)(C)C)C(CC=C(C)C)=C3OCC212873.1Semi standard non polar33892256
Licoagrocarpin,1TBDMS,isomer #1COC1=CC=C2C(=C1)OC1C3=CC=C(O[Si](C)(C)C(C)(C)C)C(CC=C(C)C)=C3OCC213103.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Licoagrocarpin GC-MS (Non-derivatized) - 70eV, Positivesplash10-00dj-2839000000-73014c787585cd48ccb62017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Licoagrocarpin GC-MS (1 TMS) - 70eV, Positivesplash10-0002-4239000000-ad0d55457137dccba6322017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Licoagrocarpin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrocarpin 10V, Positive-QTOFsplash10-002r-0928000000-27930e6915f5210f64ce2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrocarpin 20V, Positive-QTOFsplash10-00pr-3955000000-04b2d9e4a6d6c86c84fb2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrocarpin 40V, Positive-QTOFsplash10-0aor-6900000000-d705332808e8100e6fc92015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrocarpin 10V, Negative-QTOFsplash10-000i-0009000000-7be94fc11e85e1e25ac62015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrocarpin 20V, Negative-QTOFsplash10-000i-0229000000-da53b847f43456d672d22015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrocarpin 40V, Negative-QTOFsplash10-06s5-1931000000-65d4a66ee11007de62672015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrocarpin 10V, Negative-QTOFsplash10-000i-0009000000-58aebbe019e7e30272d12021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrocarpin 20V, Negative-QTOFsplash10-000i-0019000000-6b1cf99341fc816a530f2021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrocarpin 40V, Negative-QTOFsplash10-0kp0-0292000000-7bdfef15a447c94135472021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrocarpin 10V, Positive-QTOFsplash10-0019-0089000000-02cb0756afc9776d1e1f2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrocarpin 20V, Positive-QTOFsplash10-0019-0397000000-1373dc67caf43d73c88c2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrocarpin 40V, Positive-QTOFsplash10-03di-2951000000-06745c5479ae268098982021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDC00049208
Chemspider ID30838006
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound15840593
PDB IDNot Available
ChEBI ID174544
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

Enzymes

General function:
Involved in transferase activity, transferring hexosyl groups
Specific function:
UDPGT is of major importance in the conjugation and subsequent elimination of potentially toxic xenobiotics and endogenous compounds. This isoform glucuronidates bilirubin IX-alpha to form both the IX-alpha-C8 and IX-alpha-C12 monoconjugates and diconjugate. Is also able to catalyze the glucuronidation of 17beta-estradiol, 17alpha-ethinylestradiol, 1-hydroxypyrene, 4-methylumbelliferone, 1-naphthol, paranitrophenol, scopoletin, and umbelliferone.
Gene Name:
UGT1A1
Uniprot ID:
P22309
Molecular weight:
59590.91
Reactions
Licoagrocarpin → 3,4,5-trihydroxy-6-{[14-methoxy-6-(3-methylbut-2-en-1-yl)-8,17-dioxatetracyclo[8.7.0.0²,⁷.0¹¹,¹⁶]heptadeca-2(7),3,5,11(16),12,14-hexaen-5-yl]oxy}oxane-2-carboxylic aciddetails