Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:58:46 UTC
Update Date2022-03-07 02:53:38 UTC
HMDB IDHMDB0033266
Secondary Accession Numbers
  • HMDB33266
Metabolite Identification
Common NameGossyrubilone
DescriptionGossyrubilone belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Based on a literature review a small amount of articles have been published on Gossyrubilone.
Structure
Data?1563862378
Synonyms
ValueSource
6,7-Dihydroxy-2-methyl-5-[[(3-methylbutyl)imino]methyl]-8-(1-methylethyl)-1,4-naphthalenedioneHMDB
6,7-Dihydroxy-5-(isobutyliminomethyl)-8-isopropyl-2-methyl-1,4-naphthoquinoneHMDB
Chemical FormulaC20H25NO4
Average Molecular Weight343.4168
Monoisotopic Molecular Weight343.178358293
IUPAC Name6,7-dihydroxy-2-methyl-5-[(1E)-[(3-methylbutyl)imino]methyl]-8-(propan-2-yl)-1,4-dihydronaphthalene-1,4-dione
Traditional Name6,7-dihydroxy-8-isopropyl-2-methyl-5-[(1E)-[(3-methylbutyl)imino]methyl]naphthalene-1,4-dione
CAS Registry Number69734-70-9
SMILES
CC(C)CC\N=C\C1=C2C(=O)C=C(C)C(=O)C2=C(C(C)C)C(O)=C1O
InChI Identifier
InChI=1S/C20H25NO4/c1-10(2)6-7-21-9-13-16-14(22)8-12(5)18(23)17(16)15(11(3)4)20(25)19(13)24/h8-11,24-25H,6-7H2,1-5H3/b21-9+
InChI KeyUYIGQGYXLRGUGA-ZVBGSRNCSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentSesquiterpenoids
Alternative Parents
Substituents
  • Cadinane sesquiterpenoid
  • Sesquiterpenoid
  • Naphthoquinone
  • Naphthalene
  • Aryl ketone
  • Quinone
  • Benzenoid
  • Ketone
  • Shiff base
  • Aldimine
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organic nitrogen compound
  • Organic oxygen compound
  • Imine
  • Aromatic homopolycyclic compound
Molecular FrameworkAromatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point140 - 142 °CNot Available
Boiling PointNot AvailableNot Available
Water Solubility43.25 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.036 g/LALOGPS
logP3.84ALOGPS
logP3.83ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)7.18ChemAxon
pKa (Strongest Basic)5.73ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area86.96 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity100.65 m³·mol⁻¹ChemAxon
Polarizability38.87 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+193.92830932474
DeepCCS[M-H]-191.5730932474
DeepCCS[M-2H]-225.59330932474
DeepCCS[M+Na]+200.8230932474
AllCCS[M+H]+181.432859911
AllCCS[M+H-H2O]+178.632859911
AllCCS[M+NH4]+183.932859911
AllCCS[M+Na]+184.732859911
AllCCS[M-H]-186.832859911
AllCCS[M+Na-2H]-187.132859911
AllCCS[M+HCOO]-187.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
GossyrubiloneCC(C)CC\N=C\C1=C2C(=O)C=C(C)C(=O)C2=C(C(C)C)C(O)=C1O3564.7Standard polar33892256
GossyrubiloneCC(C)CC\N=C\C1=C2C(=O)C=C(C)C(=O)C2=C(C(C)C)C(O)=C1O2701.2Standard non polar33892256
GossyrubiloneCC(C)CC\N=C\C1=C2C(=O)C=C(C)C(=O)C2=C(C(C)C)C(O)=C1O2601.6Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Gossyrubilone,1TMS,isomer #1CC1=CC(=O)C2=C(/C=N/CCC(C)C)C(O)=C(O[Si](C)(C)C)C(C(C)C)=C2C1=O2704.5Semi standard non polar33892256
Gossyrubilone,1TMS,isomer #2CC1=CC(=O)C2=C(/C=N/CCC(C)C)C(O[Si](C)(C)C)=C(O)C(C(C)C)=C2C1=O2713.1Semi standard non polar33892256
Gossyrubilone,2TMS,isomer #1CC1=CC(=O)C2=C(/C=N/CCC(C)C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)C(C(C)C)=C2C1=O2711.0Semi standard non polar33892256
Gossyrubilone,1TBDMS,isomer #1CC1=CC(=O)C2=C(/C=N/CCC(C)C)C(O)=C(O[Si](C)(C)C(C)(C)C)C(C(C)C)=C2C1=O2910.9Semi standard non polar33892256
Gossyrubilone,1TBDMS,isomer #2CC1=CC(=O)C2=C(/C=N/CCC(C)C)C(O[Si](C)(C)C(C)(C)C)=C(O)C(C(C)C)=C2C1=O2922.3Semi standard non polar33892256
Gossyrubilone,2TBDMS,isomer #1CC1=CC(=O)C2=C(/C=N/CCC(C)C)C(O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)C(C(C)C)=C2C1=O3111.9Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Gossyrubilone GC-MS (Non-derivatized) - 70eV, Positivesplash10-0a6r-3059000000-1d5e0d6181a0b5878ad02017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Gossyrubilone GC-MS (2 TMS) - 70eV, Positivesplash10-00di-2000900000-8206b446970cc0c33cb02017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Gossyrubilone GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Gossyrubilone GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gossyrubilone 10V, Positive-QTOFsplash10-0006-2039000000-5e03573472c6cad000832016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gossyrubilone 20V, Positive-QTOFsplash10-0avi-6092000000-f606286c60bfef95fb6e2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gossyrubilone 40V, Positive-QTOFsplash10-05fr-9050000000-912620e84e71468faf4b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gossyrubilone 10V, Negative-QTOFsplash10-0006-1019000000-84932980fa9ec1b3ab242016-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gossyrubilone 20V, Negative-QTOFsplash10-006x-5097000000-fb7ce6e41eaa8248fb202016-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gossyrubilone 40V, Negative-QTOFsplash10-0cl0-9150000000-a1222a4c91ca870bfe282016-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gossyrubilone 10V, Positive-QTOFsplash10-0006-0009000000-d805c0618b333d81d5102021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gossyrubilone 20V, Positive-QTOFsplash10-0006-1097000000-3651c5afc82296b13acd2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gossyrubilone 40V, Positive-QTOFsplash10-052o-1090000000-dd2aabc6c48e933ad2a02021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gossyrubilone 10V, Negative-QTOFsplash10-0006-0009000000-5a516184c230fa2e7a582021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gossyrubilone 20V, Negative-QTOFsplash10-0006-0019000000-de5e63c4dde2a298d5ef2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gossyrubilone 40V, Negative-QTOFsplash10-0pbc-0090000000-d083ee8c3e11817ecd632021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB011289
KNApSAcK IDNot Available
Chemspider ID30776987
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID174631
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1834321
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.