Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 18:40:35 UTC
Update Date2022-03-07 02:53:53 UTC
HMDB IDHMDB0033901
Secondary Accession Numbers
  • HMDB33901
Metabolite Identification
Common NameGlyceollin I
DescriptionGlyceollin I belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids. Thus, glyceollin I is considered to be a flavonoid. Glyceollin I is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Based on a literature review a significant number of articles have been published on Glyceollin I.
Structure
Data?1563862478
Synonyms
ValueSource
(-)-Glyceollin IChEBI
GlyceollinKegg
rac-Glyceollin IChEMBL, HMDB
(-) - Glyceollin IHMDB
2,2-Dimethyl-2H,6H-benzofuro[3,2-c]pyrano[2,3-H][1]benzopyran-6a,9(11ah)-diol, 9ciHMDB
Glyceollin IMeSH
Chemical FormulaC20H18O5
Average Molecular Weight338.3539
Monoisotopic Molecular Weight338.115423686
IUPAC Name17,17-dimethyl-3,12,18-trioxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-1(13),4(9),5,7,14(19),15,20-heptaene-6,10-diol
Traditional Name17,17-dimethyl-3,12,18-trioxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-1(13),4(9),5,7,14(19),15,20-heptaene-6,10-diol
CAS Registry Number57103-57-8
SMILES
CC1(C)OC2=C(C=C1)C1=C(C=C2)C2OC3=C(C=CC(O)=C3)C2(O)CO1
InChI Identifier
InChI=1S/C20H18O5/c1-19(2)8-7-12-15(25-19)6-4-13-17(12)23-10-20(22)14-5-3-11(21)9-16(14)24-18(13)20/h3-9,18,21-22H,10H2,1-2H3
InChI KeyYIFYYPKWOQSCRI-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassIsoflavonoids
Sub ClassFuranoisoflavonoids
Direct ParentPterocarpans
Alternative Parents
Substituents
  • Isoflavanol
  • Pterocarpan
  • Isoflavan
  • Pyranochromene
  • 2,2-dimethyl-1-benzopyran
  • Chromane
  • Benzopyran
  • 1-benzopyran
  • Coumaran
  • Benzofuran
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Benzenoid
  • Tertiary alcohol
  • Ether
  • Organoheterocyclic compound
  • Oxacycle
  • Alcohol
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.06 g/LALOGPS
logP3.24ALOGPS
logP2.91ChemAxon
logS-3.8ALOGPS
pKa (Strongest Acidic)9.4ChemAxon
pKa (Strongest Basic)-4.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area68.15 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity92.08 m³·mol⁻¹ChemAxon
Polarizability35.63 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+177.73331661259
DarkChem[M-H]-178.52131661259
DeepCCS[M+H]+183.63330932474
DeepCCS[M-H]-181.20930932474
DeepCCS[M-2H]-215.65730932474
DeepCCS[M+Na]+190.79530932474
AllCCS[M+H]+182.232859911
AllCCS[M+H-H2O]+178.932859911
AllCCS[M+NH4]+185.332859911
AllCCS[M+Na]+186.232859911
AllCCS[M-H]-186.632859911
AllCCS[M+Na-2H]-186.132859911
AllCCS[M+HCOO]-185.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Glyceollin ICC1(C)OC2=C(C=C1)C1=C(C=C2)C2OC3=C(C=CC(O)=C3)C2(O)CO14085.0Standard polar33892256
Glyceollin ICC1(C)OC2=C(C=C1)C1=C(C=C2)C2OC3=C(C=CC(O)=C3)C2(O)CO12793.5Standard non polar33892256
Glyceollin ICC1(C)OC2=C(C=C1)C1=C(C=C2)C2OC3=C(C=CC(O)=C3)C2(O)CO13053.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Glyceollin I,1TMS,isomer #1CC1(C)C=CC2=C(C=CC3=C2OCC2(O)C4=CC=C(O[Si](C)(C)C)C=C4OC32)O12887.0Semi standard non polar33892256
Glyceollin I,1TMS,isomer #2CC1(C)C=CC2=C(C=CC3=C2OCC2(O[Si](C)(C)C)C4=CC=C(O)C=C4OC32)O12831.5Semi standard non polar33892256
Glyceollin I,2TMS,isomer #1CC1(C)C=CC2=C(C=CC3=C2OCC2(O[Si](C)(C)C)C4=CC=C(O[Si](C)(C)C)C=C4OC32)O12868.1Semi standard non polar33892256
Glyceollin I,1TBDMS,isomer #1CC1(C)C=CC2=C(C=CC3=C2OCC2(O)C4=CC=C(O[Si](C)(C)C(C)(C)C)C=C4OC32)O13147.7Semi standard non polar33892256
Glyceollin I,1TBDMS,isomer #2CC1(C)C=CC2=C(C=CC3=C2OCC2(O[Si](C)(C)C(C)(C)C)C4=CC=C(O)C=C4OC32)O13089.1Semi standard non polar33892256
Glyceollin I,2TBDMS,isomer #1CC1(C)C=CC2=C(C=CC3=C2OCC2(O[Si](C)(C)C(C)(C)C)C4=CC=C(O[Si](C)(C)C(C)(C)C)C=C4OC32)O13356.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Glyceollin I GC-MS (Non-derivatized) - 70eV, Positivesplash10-00dr-1729000000-509c3c88ec1754df6c4a2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Glyceollin I GC-MS (2 TMS) - 70eV, Positivesplash10-00xr-9504700000-aaaddd9634462f5876d22017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Glyceollin I GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 10V, Positive-QTOFsplash10-000i-1009000000-7da7b6353a3bf7f2ada42015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 20V, Positive-QTOFsplash10-000i-2049000000-855330d2cec507834ce02015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 40V, Positive-QTOFsplash10-00kg-9110000000-8a0d1442e4b4f3322f0f2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 10V, Positive-QTOFsplash10-000i-1009000000-7da7b6353a3bf7f2ada42015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 20V, Positive-QTOFsplash10-000i-2049000000-855330d2cec507834ce02015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 40V, Positive-QTOFsplash10-00kg-9110000000-8a0d1442e4b4f3322f0f2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 10V, Negative-QTOFsplash10-000i-0009000000-37c5e7045763865109d42015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 20V, Negative-QTOFsplash10-000i-0019000000-4f535f09f63f7d0c10302015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 40V, Negative-QTOFsplash10-0udi-1091000000-7a0481b012fd7d6d95ca2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 10V, Negative-QTOFsplash10-000i-0009000000-37c5e7045763865109d42015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 20V, Negative-QTOFsplash10-000i-0019000000-4f535f09f63f7d0c10302015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 40V, Negative-QTOFsplash10-0udi-1091000000-7a0481b012fd7d6d95ca2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 10V, Negative-QTOFsplash10-000i-0009000000-fba49930c01349472a4d2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 20V, Negative-QTOFsplash10-000j-0079000000-6471d5b92e9794bce9522021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 40V, Negative-QTOFsplash10-0007-5093000000-9b8151ac497c3e7f01682021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 10V, Positive-QTOFsplash10-000i-0009000000-2b8ef97f349df851f3ad2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 20V, Positive-QTOFsplash10-000i-0019000000-9abe671c9118c63fb6942021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin I 40V, Positive-QTOFsplash10-000i-0479000000-87f665e2b92e3c4fe6312021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDC00002530
Chemspider ID142931
KEGG Compound IDC01701
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkGlyceollin I
METLIN IDNot Available
PubChem Compound162807
PDB IDNot Available
ChEBI ID16470
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .