Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 18:55:20 UTC
Update Date2022-03-07 02:53:59 UTC
HMDB IDHMDB0034126
Secondary Accession Numbers
  • HMDB34126
Metabolite Identification
Common NameGyrocyanin
DescriptionGyrocyanin belongs to the class of organic compounds known as 1-hydroxy-2-unsubstituted benzenoids. These are phenols that are unsubstituted at the 2-position. Gyrocyanin has been detected, but not quantified in, a few different foods, such as common mushrooms (Agaricus bisporus), mushrooms, and oyster mushrooms (Pleurotus ostreatus). This could make gyrocyanin a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Gyrocyanin.
Structure
Data?1563862515
Synonyms
ValueSource
3,5-Bis(4-hydroxyphenyl)-1,2,4-cyclopentanetrioneHMDB
4-Hydroxy-2,5-bis(4-hydroxyphenyl)-4-cyclopentene-1,3-dione, 9ciHMDB
Chemical FormulaC17H12O5
Average Molecular Weight296.2742
Monoisotopic Molecular Weight296.068473494
IUPAC Name4-hydroxy-2,5-bis(4-hydroxyphenyl)cyclopent-4-ene-1,3-dione
Traditional Name4-hydroxy-2,5-bis(4-hydroxyphenyl)cyclopent-4-ene-1,3-dione
CAS Registry Number52591-12-5
SMILES
OC1=C(C(=O)C(C1=O)C1=CC=C(O)C=C1)C1=CC=C(O)C=C1
InChI Identifier
InChI=1S/C17H12O5/c18-11-5-1-9(2-6-11)13-15(20)14(17(22)16(13)21)10-3-7-12(19)8-4-10/h1-8,13,18-19,22H
InChI KeyDIFAFZFNMSLGGN-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 1-hydroxy-2-unsubstituted benzenoids. These are phenols that are unsubstituted at the 2-position.
KingdomOrganic compounds
Super ClassBenzenoids
ClassPhenols
Sub Class1-hydroxy-2-unsubstituted benzenoids
Direct Parent1-hydroxy-2-unsubstituted benzenoids
Alternative Parents
Substituents
  • 1-hydroxy-2-unsubstituted benzenoid
  • 1,3-diketone
  • 1,3-dicarbonyl compound
  • Monocyclic benzene moiety
  • Vinylogous acid
  • Cyclic ketone
  • Ketone
  • Enol
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point240 °CNot Available
Boiling PointNot AvailableNot Available
Water Solubility28.13 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.067 g/LALOGPS
logP3.16ALOGPS
logP2.95ChemAxon
logS-3.6ALOGPS
pKa (Strongest Acidic)7.53ChemAxon
pKa (Strongest Basic)-4.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area94.83 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity80.46 m³·mol⁻¹ChemAxon
Polarizability29.65 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+167.43131661259
DarkChem[M-H]-168.83931661259
DeepCCS[M+H]+177.94330932474
DeepCCS[M-H]-175.58530932474
DeepCCS[M-2H]-209.6730932474
DeepCCS[M+Na]+184.89630932474
AllCCS[M+H]+169.532859911
AllCCS[M+H-H2O]+165.932859911
AllCCS[M+NH4]+172.932859911
AllCCS[M+Na]+173.832859911
AllCCS[M-H]-170.032859911
AllCCS[M+Na-2H]-169.532859911
AllCCS[M+HCOO]-169.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
GyrocyaninOC1=C(C(=O)C(C1=O)C1=CC=C(O)C=C1)C1=CC=C(O)C=C14124.8Standard polar33892256
GyrocyaninOC1=C(C(=O)C(C1=O)C1=CC=C(O)C=C1)C1=CC=C(O)C=C12894.6Standard non polar33892256
GyrocyaninOC1=C(C(=O)C(C1=O)C1=CC=C(O)C=C1)C1=CC=C(O)C=C13073.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Gyrocyanin,1TMS,isomer #1C[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(C2=CC=C(O)C=C2)C1=O3004.2Semi standard non polar33892256
Gyrocyanin,1TMS,isomer #2C[Si](C)(C)OC1=CC=C(C2C(=O)C(O)=C(C3=CC=C(O)C=C3)C2=O)C=C13063.3Semi standard non polar33892256
Gyrocyanin,1TMS,isomer #3C[Si](C)(C)OC1=CC=C(C2=C(O)C(=O)C(C3=CC=C(O)C=C3)C2=O)C=C13049.7Semi standard non polar33892256
Gyrocyanin,1TMS,isomer #4C[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(O)=C1C1=CC=C(O)C=C13053.9Semi standard non polar33892256
Gyrocyanin,1TMS,isomer #5C[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(C2=CC=C(O)C=C2)=C1O3039.9Semi standard non polar33892256
Gyrocyanin,2TMS,isomer #1C[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C)C=C2)C(=O)C(C2=CC=C(O)C=C2)C1=O3030.4Semi standard non polar33892256
Gyrocyanin,2TMS,isomer #2C[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C)C=C2)C1=O3030.0Semi standard non polar33892256
Gyrocyanin,2TMS,isomer #3C[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(O[Si](C)(C)C)=C1C1=CC=C(O)C=C13022.4Semi standard non polar33892256
Gyrocyanin,2TMS,isomer #4C[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(C2=CC=C(O)C=C2)=C1O[Si](C)(C)C3062.3Semi standard non polar33892256
Gyrocyanin,2TMS,isomer #5C[Si](C)(C)OC1=CC=C(C2=C(O)C(=O)C(C3=CC=C(O[Si](C)(C)C)C=C3)C2=O)C=C13092.5Semi standard non polar33892256
Gyrocyanin,2TMS,isomer #6C[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C)C=C2)C(=O)C(C2=CC=C(O)C=C2)=C1O3065.4Semi standard non polar33892256
Gyrocyanin,2TMS,isomer #7C[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C)C=C2)C(=O)C(O)=C1C1=CC=C(O)C=C13071.1Semi standard non polar33892256
Gyrocyanin,2TMS,isomer #8C[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C)C=C2)=C1O3067.7Semi standard non polar33892256
Gyrocyanin,2TMS,isomer #9C[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(O)=C1C1=CC=C(O[Si](C)(C)C)C=C13074.8Semi standard non polar33892256
Gyrocyanin,3TMS,isomer #1C[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C)C=C2)C1=O3055.7Semi standard non polar33892256
Gyrocyanin,3TMS,isomer #2C[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(O[Si](C)(C)C)=C1C1=CC=C(O[Si](C)(C)C)C=C13028.8Semi standard non polar33892256
Gyrocyanin,3TMS,isomer #3C[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C)C=C2)=C1O[Si](C)(C)C3044.5Semi standard non polar33892256
Gyrocyanin,3TMS,isomer #4C[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C)C=C2)C(=O)C(O[Si](C)(C)C)=C1C1=CC=C(O)C=C13023.9Semi standard non polar33892256
Gyrocyanin,3TMS,isomer #5C[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C)C=C2)=C1O3099.1Semi standard non polar33892256
Gyrocyanin,3TMS,isomer #6C[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C)C=C2)C(=O)C(O)=C1C1=CC=C(O[Si](C)(C)C)C=C13094.8Semi standard non polar33892256
Gyrocyanin,4TMS,isomer #1C[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C)C=C2)C(=O)C(O[Si](C)(C)C)=C1C1=CC=C(O[Si](C)(C)C)C=C13049.8Semi standard non polar33892256
Gyrocyanin,4TMS,isomer #1C[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C)C=C2)C(=O)C(O[Si](C)(C)C)=C1C1=CC=C(O[Si](C)(C)C)C=C12909.1Standard non polar33892256
Gyrocyanin,4TMS,isomer #2C[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C)C=C2)=C1O[Si](C)(C)C3072.5Semi standard non polar33892256
Gyrocyanin,4TMS,isomer #2C[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C)C=C2)=C1O[Si](C)(C)C2918.2Standard non polar33892256
Gyrocyanin,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(C2=CC=C(O)C=C2)C1=O3290.9Semi standard non polar33892256
Gyrocyanin,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1=CC=C(C2C(=O)C(O)=C(C3=CC=C(O)C=C3)C2=O)C=C13308.9Semi standard non polar33892256
Gyrocyanin,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC1=CC=C(C2=C(O)C(=O)C(C3=CC=C(O)C=C3)C2=O)C=C13314.2Semi standard non polar33892256
Gyrocyanin,1TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(O)=C1C1=CC=C(O)C=C13356.5Semi standard non polar33892256
Gyrocyanin,1TBDMS,isomer #5CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(C2=CC=C(O)C=C2)=C1O3345.1Semi standard non polar33892256
Gyrocyanin,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)C(=O)C(C2=CC=C(O)C=C2)C1=O3579.2Semi standard non polar33892256
Gyrocyanin,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)C1=O3559.3Semi standard non polar33892256
Gyrocyanin,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(O[Si](C)(C)C(C)(C)C)=C1C1=CC=C(O)C=C13567.2Semi standard non polar33892256
Gyrocyanin,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(C2=CC=C(O)C=C2)=C1O[Si](C)(C)C(C)(C)C3610.0Semi standard non polar33892256
Gyrocyanin,2TBDMS,isomer #5CC(C)(C)[Si](C)(C)OC1=CC=C(C2=C(O)C(=O)C(C3=CC=C(O[Si](C)(C)C(C)(C)C)C=C3)C2=O)C=C13671.3Semi standard non polar33892256
Gyrocyanin,2TBDMS,isomer #6CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)C(=O)C(C2=CC=C(O)C=C2)=C1O3624.7Semi standard non polar33892256
Gyrocyanin,2TBDMS,isomer #7CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)C(=O)C(O)=C1C1=CC=C(O)C=C13630.4Semi standard non polar33892256
Gyrocyanin,2TBDMS,isomer #8CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)=C1O3619.2Semi standard non polar33892256
Gyrocyanin,2TBDMS,isomer #9CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(O)=C1C1=CC=C(O[Si](C)(C)C(C)(C)C)C=C13634.0Semi standard non polar33892256
Gyrocyanin,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)C1=O3830.0Semi standard non polar33892256
Gyrocyanin,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(O[Si](C)(C)C(C)(C)C)=C1C1=CC=C(O[Si](C)(C)C(C)(C)C)C=C13740.4Semi standard non polar33892256
Gyrocyanin,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)=C1O[Si](C)(C)C(C)(C)C3760.9Semi standard non polar33892256
Gyrocyanin,3TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)C(=O)C(O[Si](C)(C)C(C)(C)C)=C1C1=CC=C(O)C=C13734.9Semi standard non polar33892256
Gyrocyanin,3TBDMS,isomer #5CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)=C1O3914.3Semi standard non polar33892256
Gyrocyanin,3TBDMS,isomer #6CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)C(=O)C(O)=C1C1=CC=C(O[Si](C)(C)C(C)(C)C)C=C13911.4Semi standard non polar33892256
Gyrocyanin,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)C(=O)C(O[Si](C)(C)C(C)(C)C)=C1C1=CC=C(O[Si](C)(C)C(C)(C)C)C=C13939.7Semi standard non polar33892256
Gyrocyanin,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)C(=O)C(O[Si](C)(C)C(C)(C)C)=C1C1=CC=C(O[Si](C)(C)C(C)(C)C)C=C13687.5Standard non polar33892256
Gyrocyanin,4TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)=C1O[Si](C)(C)C(C)(C)C3959.1Semi standard non polar33892256
Gyrocyanin,4TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1=C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)C(=O)C(C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2)=C1O[Si](C)(C)C(C)(C)C3696.6Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Gyrocyanin GC-MS (Non-derivatized) - 70eV, Positivesplash10-0aor-1690000000-622a036fc52087cd85c02017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Gyrocyanin GC-MS (3 TMS) - 70eV, Positivesplash10-03ka-2120900000-50c21d264cf31b35da542017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Gyrocyanin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gyrocyanin 10V, Positive-QTOFsplash10-0002-0190000000-18e3fe056cfe19c358012016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gyrocyanin 20V, Positive-QTOFsplash10-002b-0390000000-04fa8ec6027668761ab12016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gyrocyanin 40V, Positive-QTOFsplash10-0a6r-3940000000-3e4cb4a2f8e0a9a928472016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gyrocyanin 10V, Negative-QTOFsplash10-0002-0090000000-2d8f84bdfcde07e22c262016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gyrocyanin 20V, Negative-QTOFsplash10-000b-0090000000-3a40fff828e1840219252016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gyrocyanin 40V, Negative-QTOFsplash10-0536-7950000000-0cd2d9ba9e1d64f42c052016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gyrocyanin 10V, Negative-QTOFsplash10-0002-0090000000-9510b8edba44bd1a321f2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gyrocyanin 20V, Negative-QTOFsplash10-0002-0090000000-05a5133df731baf4f2872021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gyrocyanin 40V, Negative-QTOFsplash10-001i-1930000000-ffc2db368fceda64ba092021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gyrocyanin 10V, Positive-QTOFsplash10-0f6t-0090000000-3f80852b6fca49f69f4d2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gyrocyanin 20V, Positive-QTOFsplash10-0002-0290000000-902ab0be4ba497c32caa2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gyrocyanin 40V, Positive-QTOFsplash10-0aor-0910000000-1b314f66a126f743d8472021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB012399
KNApSAcK IDC00054191
Chemspider ID35013702
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound71438153
PDB IDNot Available
ChEBI ID174127
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1840691
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .