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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 20:10:32 UTC

Update Date

2022-03-07 02:54:25 UTC

HMDB ID

HMDB0035223

Secondary Accession Numbers

HMDB35223

Metabolite Identification

Common Name

(S)-Pterosin D

Description

(S)-Pterosin D belongs to the class of organic compounds known as indanones. Indanones are compounds containing an indane ring bearing a ketone group (S)-Pterosin D has been detected, but not quantified in, green vegetables and root vegetables. This could make (S)-pterosin D a potential biomarker for the consumption of these foods. Based on a literature review a significant number of articles have been published on (S)-Pterosin D.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0035223
     RDKit          3D
(S)-Pterosin D
 38 39  0  0  0  0  0  0  0  0999 V2000
    2.0180    2.8418   -0.0929 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1428    1.6260    0.0042 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1985    1.8524    0.0384 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0747    0.8187    0.1259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5626   -0.4527    0.1781 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8042   -0.6932    0.1435 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3222   -2.0495    0.2011 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7049    0.3426    0.0551 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1248    0.2978    0.0242 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9515   -0.8692   -0.1446 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3053   -0.3860   -0.0779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7366   -1.3370    0.2762 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7226   -2.5235    0.6895 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9274   -0.5792   -0.1962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1714   -1.0190    0.5340 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0380   -0.7644   -1.6845 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5610    0.8217    0.1713 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9903    1.2128    1.4236 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3174    2.9187   -1.1641 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9422    2.7321    0.5091 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5015    3.7280    0.2682 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5979    2.8805   -0.0044 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9872   -2.3459   -0.6333 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4588   -2.7603    0.0249 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7057   -2.3599    1.1978 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4904    0.8255    0.9657 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4639    1.0354   -0.7768 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9637   -1.6600    0.6013 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9786   -1.2541   -1.2149 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5508   -0.2428    0.8683 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8999   -1.2392    1.5870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9727   -0.2812    0.4329 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5121   -1.9734    0.0662 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4262   -1.7947   -1.8543 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9968   -0.7512   -2.0796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6985   -0.0444   -2.1710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9293    1.5588   -0.5875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7173    1.8881    1.3664 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
  5 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 14 16  1  0
 14 17  1  0
 17 18  1  0
  8  2  1  0
 17  4  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  3 22  1  0
  7 23  1  0
  7 24  1  0
  7 25  1  0
  9 26  1  0
  9 27  1  0
 10 28  1  0
 10 29  1  0
 11 30  1  0
 15 31  1  0
 15 32  1  0
 15 33  1  0
 16 34  1  0
 16 35  1  0
 16 36  1  0
 17 37  1  0
 18 38  1  0
M  END


  Mrv0541 02241211152D          

 18 19  0  0  0  0            999 V2000
   -0.6186   -1.2364    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2057   -0.5772    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5357    0.1650    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2779    0.4121    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8558   -0.0821    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6178   -0.6593    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9478   -1.4014    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7729   -1.4843    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1029   -2.2265    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9379    0.0008    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1128    0.0008    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7828    0.7422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0414    0.8243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4536    1.4843    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2057    2.2265    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4429    2.0614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2779    1.2371    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1029    1.2371    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  6  1  0  0  0  0
  3  4  1  0  0  0  0
  3 13  1  0  0  0  0
  4  5  2  0  0  0  0
  4 17  1  0  0  0  0
  6  7  1  0  0  0  0
  6 11  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 17  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0035223

> <DATABASE_NAME>
hmdb

> <SMILES>
CC1=C(CCO)C(C)=C2C(=C1)C(O)C(C)(C)C2=O

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O3/c1-8-7-11-12(9(2)10(8)5-6-16)14(18)15(3,4)13(11)17/h7,13,16-17H,5-6H2,1-4H3

> <INCHI_KEY>
FITSCHPIOGIYJY-UHFFFAOYSA-N

> <FORMULA>
C15H20O3

> <MOLECULAR_WEIGHT>
248.3175

> <EXACT_MASS>
248.141244506

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_AVERAGE_POLARIZABILITY>
28.152680003321855

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-hydroxy-6-(2-hydroxyethyl)-2,2,5,7-tetramethyl-2,3-dihydro-1H-inden-1-one

> <ALOGPS_LOGP>
1.90

> <JCHEM_LOGP>
2.408807193

> <ALOGPS_LOGS>
-2.42

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.880285086749296

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.718364955631937

> <JCHEM_PKA_STRONGEST_BASIC>
-2.415823516432794

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
71.81599999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.49e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-hydroxy-6-(2-hydroxyethyl)-2,2,5,7-tetramethyl-3H-inden-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0035223
     RDKit          3D
(S)-Pterosin D
 38 39  0  0  0  0  0  0  0  0999 V2000
    2.0180    2.8418   -0.0929 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1428    1.6260    0.0042 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1985    1.8524    0.0384 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0747    0.8187    0.1259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5626   -0.4527    0.1781 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8042   -0.6932    0.1435 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3222   -2.0495    0.2011 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7049    0.3426    0.0551 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1248    0.2978    0.0242 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9515   -0.8692   -0.1446 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3053   -0.3860   -0.0779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7366   -1.3370    0.2762 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7226   -2.5235    0.6895 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9274   -0.5792   -0.1962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1714   -1.0190    0.5340 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0380   -0.7644   -1.6845 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5610    0.8217    0.1713 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9903    1.2128    1.4236 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3174    2.9187   -1.1641 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9422    2.7321    0.5091 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5015    3.7280    0.2682 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5979    2.8805   -0.0044 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9872   -2.3459   -0.6333 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4588   -2.7603    0.0249 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7057   -2.3599    1.1978 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4904    0.8255    0.9657 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4639    1.0354   -0.7768 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9637   -1.6600    0.6013 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9786   -1.2541   -1.2149 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5508   -0.2428    0.8683 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8999   -1.2392    1.5870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9727   -0.2812    0.4329 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5121   -1.9734    0.0662 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4262   -1.7947   -1.8543 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9968   -0.7512   -2.0796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6985   -0.0444   -2.1710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9293    1.5588   -0.5875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7173    1.8881    1.3664 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
  5 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 14 16  1  0
 14 17  1  0
 17 18  1  0
  8  2  1  0
 17  4  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  3 22  1  0
  7 23  1  0
  7 24  1  0
  7 25  1  0
  9 26  1  0
  9 27  1  0
 10 28  1  0
 10 29  1  0
 11 30  1  0
 15 31  1  0
 15 32  1  0
 15 33  1  0
 16 34  1  0
 16 35  1  0
 16 36  1  0
 17 37  1  0
 18 38  1  0
M  END

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      -1.155  -2.308   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.384  -1.077   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.000   0.308   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.385   0.769   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -3.464  -0.153   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       1.153  -1.231   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.769  -2.616   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.309  -2.771   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       3.925  -4.156   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       3.617   0.001   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.077   0.001   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.461   1.385   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.077   1.539   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.847   2.771   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -0.384   4.156   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      -2.693   3.848   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.385   2.309   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.925   2.309   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    6                                                  
CONECT    3    2    4   13                                                  
CONECT    4    3    5   17                                                  
CONECT    5    4                                                            
CONECT    6    2    7   11                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8                                                            
CONECT   10   11                                                            
CONECT   11    6   10   12                                                  
CONECT   12   11   13                                                       
CONECT   13    3   12   14                                                  
CONECT   14   13   15   17                                                  
CONECT   15   14                                                            
CONECT   16   17                                                            
CONECT   17    4   14   16   18                                             
CONECT   18   17                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   38    0
END

COMPND    HMDB0035223
HETATM    1  C1  UNL     1       2.018   2.842  -0.093  1.00  0.00           C  
HETATM    2  C2  UNL     1       1.143   1.626   0.004  1.00  0.00           C  
HETATM    3  C3  UNL     1      -0.199   1.852   0.038  1.00  0.00           C  
HETATM    4  C4  UNL     1      -1.075   0.819   0.126  1.00  0.00           C  
HETATM    5  C5  UNL     1      -0.563  -0.453   0.178  1.00  0.00           C  
HETATM    6  C6  UNL     1       0.804  -0.693   0.143  1.00  0.00           C  
HETATM    7  C7  UNL     1       1.322  -2.049   0.201  1.00  0.00           C  
HETATM    8  C8  UNL     1       1.705   0.343   0.055  1.00  0.00           C  
HETATM    9  C9  UNL     1       3.125   0.298   0.024  1.00  0.00           C  
HETATM   10  C10 UNL     1       3.952  -0.869  -0.145  1.00  0.00           C  
HETATM   11  O1  UNL     1       5.305  -0.386  -0.078  1.00  0.00           O  
HETATM   12  C11 UNL     1      -1.737  -1.337   0.276  1.00  0.00           C  
HETATM   13  O2  UNL     1      -1.723  -2.524   0.690  1.00  0.00           O  
HETATM   14  C12 UNL     1      -2.927  -0.579  -0.196  1.00  0.00           C  
HETATM   15  C13 UNL     1      -4.171  -1.019   0.534  1.00  0.00           C  
HETATM   16  C14 UNL     1      -3.038  -0.764  -1.685  1.00  0.00           C  
HETATM   17  C15 UNL     1      -2.561   0.822   0.171  1.00  0.00           C  
HETATM   18  O3  UNL     1      -2.990   1.213   1.424  1.00  0.00           O  
HETATM   19  H1  UNL     1       2.317   2.919  -1.164  1.00  0.00           H  
HETATM   20  H2  UNL     1       2.942   2.732   0.509  1.00  0.00           H  
HETATM   21  H3  UNL     1       1.501   3.728   0.268  1.00  0.00           H  
HETATM   22  H4  UNL     1      -0.598   2.880  -0.004  1.00  0.00           H  
HETATM   23  H5  UNL     1       1.987  -2.346  -0.633  1.00  0.00           H  
HETATM   24  H6  UNL     1       0.459  -2.760   0.025  1.00  0.00           H  
HETATM   25  H7  UNL     1       1.706  -2.360   1.198  1.00  0.00           H  
HETATM   26  H8  UNL     1       3.490   0.826   0.966  1.00  0.00           H  
HETATM   27  H9  UNL     1       3.464   1.035  -0.777  1.00  0.00           H  
HETATM   28  H10 UNL     1       3.964  -1.660   0.601  1.00  0.00           H  
HETATM   29  H11 UNL     1       3.979  -1.254  -1.215  1.00  0.00           H  
HETATM   30  H12 UNL     1       5.551  -0.243   0.868  1.00  0.00           H  
HETATM   31  H13 UNL     1      -3.900  -1.239   1.587  1.00  0.00           H  
HETATM   32  H14 UNL     1      -4.973  -0.281   0.433  1.00  0.00           H  
HETATM   33  H15 UNL     1      -4.512  -1.973   0.066  1.00  0.00           H  
HETATM   34  H16 UNL     1      -3.426  -1.795  -1.854  1.00  0.00           H  
HETATM   35  H17 UNL     1      -1.997  -0.751  -2.080  1.00  0.00           H  
HETATM   36  H18 UNL     1      -3.698  -0.044  -2.171  1.00  0.00           H  
HETATM   37  H19 UNL     1      -2.929   1.559  -0.588  1.00  0.00           H  
HETATM   38  H20 UNL     1      -3.717   1.888   1.366  1.00  0.00           H  
CONECT    1    2   19   20   21
CONECT    2    3    3    8
CONECT    3    4   22
CONECT    4    5    5   17
CONECT    5    6   12
CONECT    6    7    8    8
CONECT    7   23   24   25
CONECT    8    9
CONECT    9   10   26   27
CONECT   10   11   28   29
CONECT   11   30
CONECT   12   13   13   14
CONECT   14   15   16   17
CONECT   15   31   32   33
CONECT   16   34   35   36
CONECT   17   18   37
CONECT   18   38
END

HMDB0035223
     RDKit          3D
(S)-Pterosin D
 38 39  0  0  0  0  0  0  0  0999 V2000
    2.0180    2.8418   -0.0929 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1428    1.6260    0.0042 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1985    1.8524    0.0384 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0747    0.8187    0.1259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5626   -0.4527    0.1781 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8042   -0.6932    0.1435 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3222   -2.0495    0.2011 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7049    0.3426    0.0551 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1248    0.2978    0.0242 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9515   -0.8692   -0.1446 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3053   -0.3860   -0.0779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7366   -1.3370    0.2762 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7226   -2.5235    0.6895 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9274   -0.5792   -0.1962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1714   -1.0190    0.5340 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0380   -0.7644   -1.6845 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5610    0.8217    0.1713 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9903    1.2128    1.4236 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3174    2.9187   -1.1641 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9422    2.7321    0.5091 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5015    3.7280    0.2682 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5979    2.8805   -0.0044 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9872   -2.3459   -0.6333 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4588   -2.7603    0.0249 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7057   -2.3599    1.1978 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4904    0.8255    0.9657 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4639    1.0354   -0.7768 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9637   -1.6600    0.6013 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9786   -1.2541   -1.2149 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5508   -0.2428    0.8683 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8999   -1.2392    1.5870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9727   -0.2812    0.4329 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5121   -1.9734    0.0662 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4262   -1.7947   -1.8543 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9968   -0.7512   -2.0796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6985   -0.0444   -2.1710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9293    1.5588   -0.5875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7173    1.8881    1.3664 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
  5 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 14 16  1  0
 14 17  1  0
 17 18  1  0
  8  2  1  0
 17  4  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  3 22  1  0
  7 23  1  0
  7 24  1  0
  7 25  1  0
  9 26  1  0
  9 27  1  0
 10 28  1  0
 10 29  1  0
 11 30  1  0
 15 31  1  0
 15 32  1  0
 15 33  1  0
 16 34  1  0
 16 35  1  0
 16 36  1  0
 17 37  1  0
 18 38  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
Liatrin	HMDB

Chemical Formula

C₁₅H₂₀O₃

Average Molecular Weight

248.3175

Monoisotopic Molecular Weight

248.141244506

IUPAC Name

3-hydroxy-6-(2-hydroxyethyl)-2,2,5,7-tetramethyl-2,3-dihydro-1H-inden-1-one

Traditional Name

3-hydroxy-6-(2-hydroxyethyl)-2,2,5,7-tetramethyl-3H-inden-1-one

CAS Registry Number

34169-70-5

SMILES

CC1=C(CCO)C(C)=C2C(=C1)C(O)C(C)(C)C2=O

InChI Identifier

InChI=1S/C15H20O3/c1-8-7-11-12(9(2)10(8)5-6-16)14(18)15(3,4)13(11)17/h7,13,16-17H,5-6H2,1-4H3

InChI Key

FITSCHPIOGIYJY-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as indanones. Indanones are compounds containing an indane ring bearing a ketone group.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Alternative Parents

Substituents

Indanone
Aryl alkyl ketone
Aryl ketone
Secondary alcohol
Ketone
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Extracellular (HMDB: HMDB0035223)
Cytoplasm (HMDB: HMDB0035223)

Source

Exogenous

Exogenous (HMDB: HMDB0035223)

Food

Vegetable

Root vegetable

Root vegetables (FooDB: FOOD00873)

Leaf vegetable

Green vegetables (FooDB: FOOD00872)

Process

Not Available

Role

Not Available

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	180 - 183 °C	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.95 g/L	ALOGPS
logP	1.9	ALOGPS
logP	2.41	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	13.72	ChemAxon
pKa (Strongest Basic)	-2.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	71.82 m³·mol⁻¹	ChemAxon
Polarizability	28.15 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	157.599	31661259
DarkChem	[M-H]-	157.189	31661259
DeepCCS	[M+H]+	162.15	30932474
DeepCCS	[M-H]-	159.792	30932474
DeepCCS	[M-2H]-	192.678	30932474
DeepCCS	[M+Na]+	168.243	30932474
AllCCS	[M+H]+	156.6	32859911
AllCCS	[M+H-H2O]+	152.9	32859911
AllCCS	[M+NH4]+	159.9	32859911
AllCCS	[M+Na]+	160.9	32859911
AllCCS	[M-H]-	163.8	32859911
AllCCS	[M+Na-2H]-	164.0	32859911
AllCCS	[M+HCOO]-	164.3	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	5.99 minutes	32390414
Predicted by Siyang on May 30, 2022	11.8459 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.43 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	1791.6 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	273.9 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	152.1 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	161.8 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	92.1 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	456.9 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	582.1 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	64.6 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	937.0 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	416.3 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1445.3 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	326.7 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	319.3 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	252.1 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	172.4 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	20.0 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(S)-Pterosin D	CC1=C(CCO)C(C)=C2C(=C1)C(O)C(C)(C)C2=O	3133.8	Standard polar	33892256
(S)-Pterosin D	CC1=C(CCO)C(C)=C2C(=C1)C(O)C(C)(C)C2=O	2146.4	Standard non polar	33892256
(S)-Pterosin D	CC1=C(CCO)C(C)=C2C(=C1)C(O)C(C)(C)C2=O	2192.2	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
(S)-Pterosin D,1TMS,isomer #1	CC1=CC2=C(C(=O)C(C)(C)C2O)C(C)=C1CCO[Si](C)(C)C	2054.1	Semi standard non polar	33892256
(S)-Pterosin D,1TMS,isomer #2	CC1=CC2=C(C(=O)C(C)(C)C2O[Si](C)(C)C)C(C)=C1CCO	2022.1	Semi standard non polar	33892256
(S)-Pterosin D,2TMS,isomer #1	CC1=CC2=C(C(=O)C(C)(C)C2O[Si](C)(C)C)C(C)=C1CCO[Si](C)(C)C	2065.9	Semi standard non polar	33892256
(S)-Pterosin D,1TBDMS,isomer #1	CC1=CC2=C(C(=O)C(C)(C)C2O)C(C)=C1CCO[Si](C)(C)C(C)(C)C	2294.5	Semi standard non polar	33892256
(S)-Pterosin D,1TBDMS,isomer #2	CC1=CC2=C(C(=O)C(C)(C)C2O[Si](C)(C)C(C)(C)C)C(C)=C1CCO	2251.1	Semi standard non polar	33892256
(S)-Pterosin D,2TBDMS,isomer #1	CC1=CC2=C(C(=O)C(C)(C)C2O[Si](C)(C)C(C)(C)C)C(C)=C1CCO[Si](C)(C)C(C)(C)C	2515.2	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (S)-Pterosin D GC-MS (Non-derivatized) - 70eV, Positive	splash10-017j-1790000000-c2a2538fee7e2f1119c0	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (S)-Pterosin D GC-MS (2 TMS) - 70eV, Positive	splash10-0fb9-5129000000-432e4bd149aa71a9fdca	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (S)-Pterosin D GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (S)-Pterosin D 10V, Positive-QTOF	splash10-001i-0090000000-d4e39038eee6303db755	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (S)-Pterosin D 20V, Positive-QTOF	splash10-01qa-1290000000-19112e3d071c610eb6ba	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (S)-Pterosin D 40V, Positive-QTOF	splash10-03di-1490000000-a19ab07af59eb6f836d9	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (S)-Pterosin D 10V, Negative-QTOF	splash10-0002-0090000000-7b3fce19b4c5cb41fa54	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (S)-Pterosin D 20V, Negative-QTOF	splash10-00mk-0290000000-cc2e6edd29dc1f08e9ee	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (S)-Pterosin D 40V, Negative-QTOF	splash10-0f6t-3890000000-3e58528da06b6f6548f4	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (S)-Pterosin D 10V, Negative-QTOF	splash10-0002-0090000000-f4bbda4bcf9de2708e48	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (S)-Pterosin D 20V, Negative-QTOF	splash10-0002-0090000000-073bef0c13b860ce6716	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (S)-Pterosin D 40V, Negative-QTOF	splash10-0uxs-0290000000-93e7b8283f7f2dd286ad	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (S)-Pterosin D 10V, Positive-QTOF	splash10-000t-0090000000-0cd3003385e1c0d3f025	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (S)-Pterosin D 20V, Positive-QTOF	splash10-0ue9-0090000000-df012ca2538bff862926	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (S)-Pterosin D 40V, Positive-QTOF	splash10-08fr-2930000000-24c574d634e087860c1d	2021-09-24	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Cytoplasm
Extracellular

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB015520

KNApSAcK ID

C00021501

Chemspider ID

4478767

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5320783

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

Showing metabocard for (S)-Pterosin D (HMDB0035223)

MOL for HMDB0035223 ((S)-Pterosin D)

3D MOL for HMDB0035223 ((S)-Pterosin D)

3D SDF for HMDB0035223 ((S)-Pterosin D)

3D-SDF for HMDB0035223 ((S)-Pterosin D)

PDB for HMDB0035223 ((S)-Pterosin D)

3D PDB for HMDB0035223 ((S)-Pterosin D)

SMILES for HMDB0035223 ((S)-Pterosin D)

INCHI for HMDB0035223 ((S)-Pterosin D)

Structure for HMDB0035223 ((S)-Pterosin D)

3D Structure for HMDB0035223 ((S)-Pterosin D)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra