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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 20:48:13 UTC
Update Date2022-03-07 02:54:37 UTC
HMDB IDHMDB0035781
Secondary Accession Numbers
  • HMDB35781
Metabolite Identification
Common NameNaematolone
DescriptionNaematolone belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Based on a literature review a small amount of articles have been published on Naematolone.
Structure
Data?1563862771
Synonyms
ValueSource
NaematolonMeSH
4-Acetyloxy-8-hydroxy-2-methylene-6,10,10-trimethyl-bicyclo(7.2.0)undec-5-ene-3,7-dioneMeSH
NematoloneHMDB
(5Z)-8-Hydroxy-6,10,10-trimethyl-2-methylidene-3,7-dioxobicyclo[7.2.0]undec-5-en-4-yl acetic acidGenerator
Chemical FormulaC17H22O5
Average Molecular Weight306.3536
Monoisotopic Molecular Weight306.146723814
IUPAC Name(5Z)-8-hydroxy-6,10,10-trimethyl-2-methylidene-3,7-dioxobicyclo[7.2.0]undec-5-en-4-yl acetate
Traditional Name(5Z)-8-hydroxy-6,10,10-trimethyl-2-methylidene-3,7-dioxobicyclo[7.2.0]undec-5-en-4-yl acetate
CAS Registry Number92121-62-5
SMILES
CC(=O)OC1\C=C(C)/C(=O)C(O)C2C(CC2(C)C)C(=C)C1=O
InChI Identifier
InChI=1S/C17H22O5/c1-8-6-12(22-10(3)18)15(20)9(2)11-7-17(4,5)13(11)16(21)14(8)19/h6,11-13,16,21H,2,7H2,1,3-5H3/b8-6-
InChI KeyBBRNVDBLOTVLMB-VURMDHGXSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentSesquiterpenoids
Alternative Parents
Substituents
  • Sesquiterpenoid
  • Caryophyllane sesquiterpenoid
  • Alpha-acyloxy ketone
  • Carboxylic acid ester
  • Ketone
  • Secondary alcohol
  • Cyclic ketone
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Carbonyl group
  • Organooxygen compound
  • Alcohol
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility284.4 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.53 g/LALOGPS
logP1.57ALOGPS
logP2.12ChemAxon
logS-2.8ALOGPS
pKa (Strongest Acidic)11.02ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area80.67 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity80.74 m³·mol⁻¹ChemAxon
Polarizability31.86 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+172.9230932474
DeepCCS[M-H]-170.56330932474
DeepCCS[M-2H]-203.89730932474
DeepCCS[M+Na]+179.12430932474
AllCCS[M+H]+171.132859911
AllCCS[M+H-H2O]+168.032859911
AllCCS[M+NH4]+174.032859911
AllCCS[M+Na]+174.832859911
AllCCS[M-H]-176.032859911
AllCCS[M+Na-2H]-176.232859911
AllCCS[M+HCOO]-176.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
NaematoloneCC(=O)OC1\C=C(C)/C(=O)C(O)C2C(CC2(C)C)C(=C)C1=O2927.8Standard polar33892256
NaematoloneCC(=O)OC1\C=C(C)/C(=O)C(O)C2C(CC2(C)C)C(=C)C1=O2101.0Standard non polar33892256
NaematoloneCC(=O)OC1\C=C(C)/C(=O)C(O)C2C(CC2(C)C)C(=C)C1=O2117.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Naematolone,1TMS,isomer #1C=C1C(=O)C(OC(C)=O)/C=C(/C)C(=O)C(O[Si](C)(C)C)C2C1CC2(C)C2234.8Semi standard non polar33892256
Naematolone,1TMS,isomer #2C=C1C(=O)C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C)=C(O)C2C1CC2(C)C2258.1Semi standard non polar33892256
Naematolone,1TMS,isomer #3C=C1C(O[Si](C)(C)C)=C(OC(C)=O)/C=C(/C)C(=O)C(O)C2C1CC2(C)C2252.3Semi standard non polar33892256
Naematolone,2TMS,isomer #1C=C1C(O[Si](C)(C)C)=C(OC(C)=O)/C=C(/C)C(=O)C(O[Si](C)(C)C)C2C1CC2(C)C2263.9Semi standard non polar33892256
Naematolone,2TMS,isomer #1C=C1C(O[Si](C)(C)C)=C(OC(C)=O)/C=C(/C)C(=O)C(O[Si](C)(C)C)C2C1CC2(C)C2263.9Standard non polar33892256
Naematolone,2TMS,isomer #2C=C1C(=O)C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)C2C1CC2(C)C2236.7Semi standard non polar33892256
Naematolone,2TMS,isomer #2C=C1C(=O)C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)C2C1CC2(C)C2249.4Standard non polar33892256
Naematolone,2TMS,isomer #3C=C1C(O[Si](C)(C)C)=C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C)=C(O)C2C1CC2(C)C2311.1Semi standard non polar33892256
Naematolone,2TMS,isomer #3C=C1C(O[Si](C)(C)C)=C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C)=C(O)C2C1CC2(C)C2203.7Standard non polar33892256
Naematolone,3TMS,isomer #1C=C1C(O[Si](C)(C)C)=C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)C2C1CC2(C)C2297.4Semi standard non polar33892256
Naematolone,3TMS,isomer #1C=C1C(O[Si](C)(C)C)=C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C)=C(O[Si](C)(C)C)C2C1CC2(C)C2349.1Standard non polar33892256
Naematolone,1TBDMS,isomer #1C=C1C(=O)C(OC(C)=O)/C=C(/C)C(=O)C(O[Si](C)(C)C(C)(C)C)C2C1CC2(C)C2457.0Semi standard non polar33892256
Naematolone,1TBDMS,isomer #2C=C1C(=O)C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C(C)(C)C)=C(O)C2C1CC2(C)C2472.1Semi standard non polar33892256
Naematolone,1TBDMS,isomer #3C=C1C(O[Si](C)(C)C(C)(C)C)=C(OC(C)=O)/C=C(/C)C(=O)C(O)C2C1CC2(C)C2489.5Semi standard non polar33892256
Naematolone,2TBDMS,isomer #1C=C1C(O[Si](C)(C)C(C)(C)C)=C(OC(C)=O)/C=C(/C)C(=O)C(O[Si](C)(C)C(C)(C)C)C2C1CC2(C)C2731.2Semi standard non polar33892256
Naematolone,2TBDMS,isomer #1C=C1C(O[Si](C)(C)C(C)(C)C)=C(OC(C)=O)/C=C(/C)C(=O)C(O[Si](C)(C)C(C)(C)C)C2C1CC2(C)C2643.4Standard non polar33892256
Naematolone,2TBDMS,isomer #2C=C1C(=O)C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)C2C1CC2(C)C2657.4Semi standard non polar33892256
Naematolone,2TBDMS,isomer #2C=C1C(=O)C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)C2C1CC2(C)C2618.8Standard non polar33892256
Naematolone,2TBDMS,isomer #3C=C1C(O[Si](C)(C)C(C)(C)C)=C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C(C)(C)C)=C(O)C2C1CC2(C)C2748.9Semi standard non polar33892256
Naematolone,2TBDMS,isomer #3C=C1C(O[Si](C)(C)C(C)(C)C)=C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C(C)(C)C)=C(O)C2C1CC2(C)C2551.0Standard non polar33892256
Naematolone,3TBDMS,isomer #1C=C1C(O[Si](C)(C)C(C)(C)C)=C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)C2C1CC2(C)C2923.3Semi standard non polar33892256
Naematolone,3TBDMS,isomer #1C=C1C(O[Si](C)(C)C(C)(C)C)=C(OC(C)=O)/C=C(/C)C(O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)C2C1CC2(C)C2853.4Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Naematolone GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-9030000000-fb729d71138b879480112017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Naematolone GC-MS (1 TMS) - 70eV, Positivesplash10-0006-9003000000-4ed8def703d257bc7eb32017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Naematolone GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Naematolone 10V, Positive-QTOFsplash10-0a4i-0095000000-5ae5d6bac7b370c886bd2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Naematolone 20V, Positive-QTOFsplash10-05mt-1291000000-0e30e9c406f132bf0d0d2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Naematolone 40V, Positive-QTOFsplash10-0a4i-4920000000-ba29ab3532dffbc282c72016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Naematolone 10V, Negative-QTOFsplash10-0a4i-3069000000-693edf59fca274bf27132016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Naematolone 20V, Negative-QTOFsplash10-0bt9-3092000000-34064a7173c26d74e6512016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Naematolone 40V, Negative-QTOFsplash10-0a4i-9310000000-52979b9a00c0ff89fb762016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Naematolone 10V, Positive-QTOFsplash10-05mk-0094000000-1e363cc03e41feec89f32021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Naematolone 20V, Positive-QTOFsplash10-0002-0090000000-e4574dc329d6631f9a902021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Naematolone 40V, Positive-QTOFsplash10-004j-0190000000-95c0a9f417d9bbcc3fbb2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Naematolone 10V, Negative-QTOFsplash10-0a4i-6009000000-c2d26eb0ded67c32e3db2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Naematolone 20V, Negative-QTOFsplash10-0a4j-8090000000-da876a5b3f5dd36df6a12021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Naematolone 40V, Negative-QTOFsplash10-0a4l-9000000000-7139f3a01c58a80ac3362021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB014528
KNApSAcK IDC00012495
Chemspider ID20145021
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound20839779
PDB IDNot Available
ChEBI ID172533
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1851571
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.