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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 22:16:16 UTC

Update Date

2022-03-07 02:55:09 UTC

HMDB ID

HMDB0037029

Secondary Accession Numbers

HMDB37029

Metabolite Identification

Common Name

gamma1-Cadinene

Description

gamma1-Cadinene, also known as γ1-cadinene, belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Based on a literature review a small amount of articles have been published on gamma1-Cadinene.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0037029
     RDKit          3D
gamma1-Cadinene
 39 40  0  0  0  0  0  0  0  0999 V2000
   -1.7342    3.3302   -0.5181 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6245    2.0728   -0.1164 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8151    1.2074   -0.2518 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6015   -0.2461   -0.1179 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2437   -0.6589    0.3516 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9384   -2.0658    0.2060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8185   -3.1097   -0.3761 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2498   -2.4990    0.6302 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1262   -1.4044    1.2178 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2051   -0.4035    0.0415 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3519    0.5240    0.2016 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4336    1.4813   -0.9606 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6326   -0.2865    0.2201 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1327    0.2052   -0.1979 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3338    1.5592    0.4539 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6398    3.7376   -0.9313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8775    3.9766   -0.4276 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5659    1.5956    0.5000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2831    1.4796   -1.2438 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3411   -0.6442    0.6254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8906   -0.7330   -1.0858 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2400   -0.4411    1.4653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7507   -2.7450   -0.7863 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0696   -3.8117    0.4538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3125   -3.7213   -1.1517 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5818   -3.5258    0.5727 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1171   -1.8424    1.3547 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6527   -0.9687    2.0946 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4473   -1.0550   -0.8501 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3604    1.0601    1.1806 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6442    2.4979   -0.5584 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5522    1.4438   -1.6363 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3732    1.2283   -1.5336 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8391   -0.7114    1.2197 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4577    0.4399    0.0203 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6747   -1.0359   -0.5871 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3639    0.3561   -1.2912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5478    1.4164    1.5525 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4254    2.2974    0.2597 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 10 14  1  0
 14 15  1  0
 15  2  1  0
 14  5  1  0
  1 16  1  0
  1 17  1  0
  3 18  1  0
  3 19  1  0
  4 20  1  0
  4 21  1  0
  5 22  1  0
  7 23  1  0
  7 24  1  0
  7 25  1  0
  8 26  1  0
  9 27  1  0
  9 28  1  0
 10 29  1  0
 11 30  1  0
 12 31  1  0
 12 32  1  0
 12 33  1  0
 13 34  1  0
 13 35  1  0
 13 36  1  0
 14 37  1  0
 15 38  1  0
 15 39  1  0
M  END


  Mrv0541 05061309312D          

 15 16  0  0  0  0            999 V2000
    3.5724    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  7  5  1  0  0  0  0
  8  6  1  0  0  0  0
 10  1  1  0  0  0  0
 10  2  1  0  0  0  0
 11  3  2  0  0  0  0
 11  5  1  0  0  0  0
 11  9  1  0  0  0  0
 12  4  1  0  0  0  0
 12  6  2  0  0  0  0
 13  8  1  0  0  0  0
 13 10  1  0  0  0  0
 14  7  1  0  0  0  0
 14 12  1  0  0  0  0
 15  9  1  0  0  0  0
 15 13  1  0  0  0  0
 15 14  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0037029

> <DATABASE_NAME>
hmdb

> <SMILES>
CC(C)C1CC=C(C)C2CCC(=C)CC12

> <INCHI_IDENTIFIER>
InChI=1S/C15H24/c1-10(2)13-8-6-12(4)14-7-5-11(3)9-15(13)14/h6,10,13-15H,3,5,7-9H2,1-2,4H3

> <INCHI_KEY>
COEMCKKNQLRLNH-UHFFFAOYSA-N

> <FORMULA>
C15H24

> <MOLECULAR_WEIGHT>
204.3511

> <EXACT_MASS>
204.187800768

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_AVERAGE_POLARIZABILITY>
25.935519449098287

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
8-methyl-3-methylidene-5-(propan-2-yl)-1,2,3,4,4a,5,6,8a-octahydronaphthalene

> <ALOGPS_LOGP>
4.86

> <JCHEM_LOGP>
4.506281368000001

> <ALOGPS_LOGS>
-4.53

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0

> <JCHEM_REFRACTIVITY>
67.5259

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.98e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4-isopropyl-1-methyl-6-methylidene-4,4a,5,7,8,8a-hexahydro-3H-naphthalene

> <JCHEM_VEBER_RULE>
1

$$$$

HMDB0037029
     RDKit          3D
gamma1-Cadinene
 39 40  0  0  0  0  0  0  0  0999 V2000
   -1.7342    3.3302   -0.5181 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6245    2.0728   -0.1164 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8151    1.2074   -0.2518 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6015   -0.2461   -0.1179 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2437   -0.6589    0.3516 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9384   -2.0658    0.2060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8185   -3.1097   -0.3761 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2498   -2.4990    0.6302 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1262   -1.4044    1.2178 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2051   -0.4035    0.0415 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3519    0.5240    0.2016 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4336    1.4813   -0.9606 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6326   -0.2865    0.2201 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1327    0.2052   -0.1979 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3338    1.5592    0.4539 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6398    3.7376   -0.9313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8775    3.9766   -0.4276 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5659    1.5956    0.5000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2831    1.4796   -1.2438 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3411   -0.6442    0.6254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8906   -0.7330   -1.0858 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2400   -0.4411    1.4653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7507   -2.7450   -0.7863 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0696   -3.8117    0.4538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3125   -3.7213   -1.1517 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5818   -3.5258    0.5727 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1171   -1.8424    1.3547 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6527   -0.9687    2.0946 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4473   -1.0550   -0.8501 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3604    1.0601    1.1806 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6442    2.4979   -0.5584 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5522    1.4438   -1.6363 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3732    1.2283   -1.5336 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8391   -0.7114    1.2197 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4577    0.4399    0.0203 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6747   -1.0359   -0.5871 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3639    0.3561   -1.2912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5478    1.4164    1.5525 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4254    2.2974    0.2597 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 10 14  1  0
 14 15  1  0
 15  2  1  0
 14  5  1  0
  1 16  1  0
  1 17  1  0
  3 18  1  0
  3 19  1  0
  4 20  1  0
  4 21  1  0
  5 22  1  0
  7 23  1  0
  7 24  1  0
  7 25  1  0
  8 26  1  0
  9 27  1  0
  9 28  1  0
 10 29  1  0
 11 30  1  0
 12 31  1  0
 12 32  1  0
 12 33  1  0
 13 34  1  0
 13 35  1  0
 13 36  1  0
 14 37  1  0
 15 38  1  0
 15 39  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       6.668   6.930   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.001   6.930   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.668   3.850   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667   4.620   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.335   6.160   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.335   4.620   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
CONECT    1   10                                                            
CONECT    2   10                                                            
CONECT    3   11                                                            
CONECT    4   12                                                            
CONECT    5    7   11                                                       
CONECT    6    8   12                                                       
CONECT    7    5   14                                                       
CONECT    8    6   13                                                       
CONECT    9   11   15                                                       
CONECT   10    1    2   13                                                  
CONECT   11    3    5    9                                                  
CONECT   12    4    6   14                                                  
CONECT   13    8   10   15                                                  
CONECT   14    7   12   15                                                  
CONECT   15    9   13   14                                                  
MASTER        0    0    0    0    0    0    0    0   15    0   32    0
END

COMPND    HMDB0037029
HETATM    1  C1  UNL     1      -1.734   3.330  -0.518  1.00  0.00           C  
HETATM    2  C2  UNL     1      -1.624   2.073  -0.116  1.00  0.00           C  
HETATM    3  C3  UNL     1      -2.815   1.207  -0.252  1.00  0.00           C  
HETATM    4  C4  UNL     1      -2.601  -0.246  -0.118  1.00  0.00           C  
HETATM    5  C5  UNL     1      -1.244  -0.659   0.352  1.00  0.00           C  
HETATM    6  C6  UNL     1      -0.938  -2.066   0.206  1.00  0.00           C  
HETATM    7  C7  UNL     1      -1.819  -3.110  -0.376  1.00  0.00           C  
HETATM    8  C8  UNL     1       0.250  -2.499   0.630  1.00  0.00           C  
HETATM    9  C9  UNL     1       1.126  -1.404   1.218  1.00  0.00           C  
HETATM   10  C10 UNL     1       1.205  -0.403   0.041  1.00  0.00           C  
HETATM   11  C11 UNL     1       2.352   0.524   0.202  1.00  0.00           C  
HETATM   12  C12 UNL     1       2.434   1.481  -0.961  1.00  0.00           C  
HETATM   13  C13 UNL     1       3.633  -0.287   0.220  1.00  0.00           C  
HETATM   14  C14 UNL     1      -0.133   0.205  -0.198  1.00  0.00           C  
HETATM   15  C15 UNL     1      -0.334   1.559   0.454  1.00  0.00           C  
HETATM   16  H1  UNL     1      -2.640   3.738  -0.931  1.00  0.00           H  
HETATM   17  H2  UNL     1      -0.878   3.977  -0.428  1.00  0.00           H  
HETATM   18  H3  UNL     1      -3.566   1.596   0.500  1.00  0.00           H  
HETATM   19  H4  UNL     1      -3.283   1.480  -1.244  1.00  0.00           H  
HETATM   20  H5  UNL     1      -3.341  -0.644   0.625  1.00  0.00           H  
HETATM   21  H6  UNL     1      -2.891  -0.733  -1.086  1.00  0.00           H  
HETATM   22  H7  UNL     1      -1.240  -0.441   1.465  1.00  0.00           H  
HETATM   23  H8  UNL     1      -2.751  -2.745  -0.786  1.00  0.00           H  
HETATM   24  H9  UNL     1      -2.070  -3.812   0.454  1.00  0.00           H  
HETATM   25  H10 UNL     1      -1.312  -3.721  -1.152  1.00  0.00           H  
HETATM   26  H11 UNL     1       0.582  -3.526   0.573  1.00  0.00           H  
HETATM   27  H12 UNL     1       2.117  -1.842   1.355  1.00  0.00           H  
HETATM   28  H13 UNL     1       0.653  -0.969   2.095  1.00  0.00           H  
HETATM   29  H14 UNL     1       1.447  -1.055  -0.850  1.00  0.00           H  
HETATM   30  H15 UNL     1       2.360   1.060   1.181  1.00  0.00           H  
HETATM   31  H16 UNL     1       2.644   2.498  -0.558  1.00  0.00           H  
HETATM   32  H17 UNL     1       1.552   1.444  -1.636  1.00  0.00           H  
HETATM   33  H18 UNL     1       3.373   1.228  -1.534  1.00  0.00           H  
HETATM   34  H19 UNL     1       3.839  -0.711   1.220  1.00  0.00           H  
HETATM   35  H20 UNL     1       4.458   0.440   0.020  1.00  0.00           H  
HETATM   36  H21 UNL     1       3.675  -1.036  -0.587  1.00  0.00           H  
HETATM   37  H22 UNL     1      -0.364   0.356  -1.291  1.00  0.00           H  
HETATM   38  H23 UNL     1      -0.548   1.416   1.552  1.00  0.00           H  
HETATM   39  H24 UNL     1       0.425   2.297   0.260  1.00  0.00           H  
CONECT    1    2    2   16   17
CONECT    2    3   15
CONECT    3    4   18   19
CONECT    4    5   20   21
CONECT    5    6   14   22
CONECT    6    7    8    8
CONECT    7   23   24   25
CONECT    8    9   26
CONECT    9   10   27   28
CONECT   10   11   14   29
CONECT   11   12   13   30
CONECT   12   31   32   33
CONECT   13   34   35   36
CONECT   14   15   37
CONECT   15   38   39
END

HMDB0037029
     RDKit          3D
gamma1-Cadinene
 39 40  0  0  0  0  0  0  0  0999 V2000
   -1.7342    3.3302   -0.5181 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6245    2.0728   -0.1164 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8151    1.2074   -0.2518 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6015   -0.2461   -0.1179 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2437   -0.6589    0.3516 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9384   -2.0658    0.2060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8185   -3.1097   -0.3761 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2498   -2.4990    0.6302 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1262   -1.4044    1.2178 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2051   -0.4035    0.0415 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3519    0.5240    0.2016 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4336    1.4813   -0.9606 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6326   -0.2865    0.2201 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1327    0.2052   -0.1979 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3338    1.5592    0.4539 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6398    3.7376   -0.9313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8775    3.9766   -0.4276 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5659    1.5956    0.5000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2831    1.4796   -1.2438 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3411   -0.6442    0.6254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8906   -0.7330   -1.0858 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2400   -0.4411    1.4653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7507   -2.7450   -0.7863 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0696   -3.8117    0.4538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3125   -3.7213   -1.1517 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5818   -3.5258    0.5727 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1171   -1.8424    1.3547 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6527   -0.9687    2.0946 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4473   -1.0550   -0.8501 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3604    1.0601    1.1806 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6442    2.4979   -0.5584 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5522    1.4438   -1.6363 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3732    1.2283   -1.5336 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8391   -0.7114    1.2197 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4577    0.4399    0.0203 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6747   -1.0359   -0.5871 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3639    0.3561   -1.2912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5478    1.4164    1.5525 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4254    2.2974    0.2597 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 10 14  1  0
 14 15  1  0
 15  2  1  0
 14  5  1  0
  1 16  1  0
  1 17  1  0
  3 18  1  0
  3 19  1  0
  4 20  1  0
  4 21  1  0
  5 22  1  0
  7 23  1  0
  7 24  1  0
  7 25  1  0
  8 26  1  0
  9 27  1  0
  9 28  1  0
 10 29  1  0
 11 30  1  0
 12 31  1  0
 12 32  1  0
 12 33  1  0
 13 34  1  0
 13 35  1  0
 13 36  1  0
 14 37  1  0
 15 38  1  0
 15 39  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
g1-Cadinene	Generator
Γ1-cadinene	Generator
Brusatol	HMDB
Yatansin	HMDB

Chemical Formula

C₁₅H₂₄

Average Molecular Weight

204.3511

Monoisotopic Molecular Weight

204.187800768

IUPAC Name

8-methyl-3-methylidene-5-(propan-2-yl)-1,2,3,4,4a,5,6,8a-octahydronaphthalene

Traditional Name

4-isopropyl-1-methyl-6-methylidene-4,4a,5,7,8,8a-hexahydro-3H-naphthalene

CAS Registry Number

66141-11-5

SMILES

CC(C)C1CC=C(C)C2CCC(=C)CC12

InChI Identifier

InChI=1S/C15H24/c1-10(2)13-8-6-12(4)14-7-5-11(3)9-15(13)14/h6,10,13-15H,3,5,7-9H2,1-2,4H3

InChI Key

COEMCKKNQLRLNH-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Cadinane sesquiterpenoid
Branched unsaturated hydrocarbon
Polycyclic hydrocarbon
Cyclic olefin
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Olefin
Hydrocarbon
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Organoleptic effect

Odor

wood

Disposition

Biological location

Cytoplasm (HMDB: HMDB0037029)
Cell membrane (HMDB: HMDB0037029)

Cellular substructure

Extracellular (HMDB: HMDB0037029)
Membrane (HMDB: HMDB0037029)

Route of exposure

Enteral

Ingestion (HMDB: HMDB0037029)

Source

Endogenous

Endogenous (HMDB: HMDB0037029)

Plant

Plant (HMDB: HMDB0037029)

Animal

Animal (HMDB: HMDB0037029)

Exogenous

Food

Food (HMDB: HMDB0037029)

Herb and spice

Herbs and Spices (FooDB: FOOD00866)

Fat and oil

Fats and oils (FooDB: FOOD00864)

Vegetable

Juniperus communis (FooDB: FOOD00895)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid peroxidation (HMDB: HMDB0037029)

Biochemical process

Fatty acid metabolism (HMDB: HMDB0037029)

Cellular process

Cell signaling (HMDB: HMDB0037029)

Biochemical pathway

Lipid metabolism pathway (HMDB: HMDB0037029)

Role

Biological role

Membrane stabilizer (HMDB: HMDB0037029)

Nutrient

Nutrient (HMDB: HMDB0037029)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0037029)

Food and nutrition

Food additive

Flavoring agent

Flavoring agent (HMDB: HMDB0037029)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	0.054 mg/L @ 25 °C (est)	The Good Scents Company Information System
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.006 g/L	ALOGPS
logP	4.86	ALOGPS
logP	4.51	ChemAxon
logS	-4.5	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	67.53 m³·mol⁻¹	ChemAxon
Polarizability	25.94 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	150.138	31661259
DarkChem	[M-H]-	147.552	31661259
DeepCCS	[M-2H]-	185.346	30932474
DeepCCS	[M+Na]+	160.901	30932474
AllCCS	[M+H]+	147.6	32859911
AllCCS	[M+H-H2O]+	143.7	32859911
AllCCS	[M+NH4]+	151.4	32859911
AllCCS	[M+Na]+	152.4	32859911
AllCCS	[M-H]-	156.4	32859911
AllCCS	[M+Na-2H]-	157.0	32859911
AllCCS	[M+HCOO]-	157.7	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
gamma1-Cadinene	CC(C)C1CC=C(C)C2CCC(=C)CC12	1734.0	Standard polar	33892256
gamma1-Cadinene	CC(C)C1CC=C(C)C2CCC(=C)CC12	1498.0	Standard non polar	33892256
gamma1-Cadinene	CC(C)C1CC=C(C)C2CCC(=C)CC12	1485.7	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - gamma1-Cadinene GC-MS (Non-derivatized) - 70eV, Positive	splash10-000e-2900000000-8ecdc9e2962c8f953859	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - gamma1-Cadinene GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - gamma1-Cadinene 10V, Positive-QTOF	splash10-0a4i-0490000000-828317e1a34a7bb13a4e	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - gamma1-Cadinene 20V, Positive-QTOF	splash10-0bta-2920000000-393208f4df17e3d8c8b9	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - gamma1-Cadinene 40V, Positive-QTOF	splash10-0292-5900000000-78ca1c40e3be67c349f6	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - gamma1-Cadinene 10V, Negative-QTOF	splash10-0udi-0090000000-f8449711e7ab6131e4da	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - gamma1-Cadinene 20V, Negative-QTOF	splash10-0udi-0190000000-6e2ce0787f33928acd57	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - gamma1-Cadinene 40V, Negative-QTOF	splash10-01p9-1910000000-70b2e491ac791461774e	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - gamma1-Cadinene 10V, Positive-QTOF	splash10-0a4i-1390000000-83ad1afc9228ca07596c	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - gamma1-Cadinene 20V, Positive-QTOF	splash10-052b-9630000000-380f2fc1b08fd96a150f	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - gamma1-Cadinene 40V, Positive-QTOF	splash10-0006-9400000000-cd2d527bc26c49dd936c	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - gamma1-Cadinene 10V, Negative-QTOF	splash10-0udi-0090000000-7ccf03fa1149a1e9f55f	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - gamma1-Cadinene 20V, Negative-QTOF	splash10-0udi-0090000000-7ccf03fa1149a1e9f55f	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - gamma1-Cadinene 40V, Negative-QTOF	splash10-0pb9-0930000000-5a2574f3b6ac7e21f582	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB016010

KNApSAcK ID

C00020052

Chemspider ID

35014350

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

12358778

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

rw1858791

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for gamma1-Cadinene (HMDB0037029)

MOL for HMDB0037029 (gamma1-Cadinene)

3D MOL for HMDB0037029 (gamma1-Cadinene)

3D SDF for HMDB0037029 (gamma1-Cadinene)

3D-SDF for HMDB0037029 (gamma1-Cadinene)

PDB for HMDB0037029 (gamma1-Cadinene)

3D PDB for HMDB0037029 (gamma1-Cadinene)

SMILES for HMDB0037029 (gamma1-Cadinene)

INCHI for HMDB0037029 (gamma1-Cadinene)

Structure for HMDB0037029 (gamma1-Cadinene)

3D Structure for HMDB0037029 (gamma1-Cadinene)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra

MS/MS Spectra