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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 22:32:22 UTC
Update Date2022-03-07 02:55:16 UTC
HMDB IDHMDB0037300
Secondary Accession Numbers
  • HMDB37300
Metabolite Identification
Common NameJubanine C
DescriptionJubanine C, also known as jubanine-C, belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds. Jubanine C has been detected, but not quantified in, fruits. This could make jubanine C a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Jubanine C.
Structure
Data?1563863007
Synonyms
ValueSource
N-[(10Z)-7-Benzyl-5,8-dihydroxy-3-phenyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[2-(dimethylamino)-3-methylpentanoyl]pyrrolidine-2-carboximidateHMDB
Jubanine-CHMDB
Jubanine CMeSH
Chemical FormulaC39H47N5O5
Average Molecular Weight665.821
Monoisotopic Molecular Weight665.357719639
IUPAC NameN-[(10Z)-7-benzyl-5,8-dioxo-3-phenyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),10,12,15-tetraen-4-yl]-1-[2-(dimethylamino)-3-methylpentanoyl]pyrrolidine-2-carboxamide
Traditional NameN-[(10Z)-7-benzyl-5,8-dioxo-3-phenyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),10,12,15-tetraen-4-yl]-1-[2-(dimethylamino)-3-methylpentanoyl]pyrrolidine-2-carboxamide
CAS Registry Number159226-00-3
SMILES
CCC(C)C(N(C)C)C(=O)N1CCCC1C(=O)NC1C(OC2=CC=C(C=C2)\C=C/NC(=O)C(CC2=CC=CC=C2)NC1=O)C1=CC=CC=C1
InChI Identifier
InChI=1S/C39H47N5O5/c1-5-26(2)34(43(3)4)39(48)44-24-12-17-32(44)37(46)42-33-35(29-15-10-7-11-16-29)49-30-20-18-27(19-21-30)22-23-40-36(45)31(41-38(33)47)25-28-13-8-6-9-14-28/h6-11,13-16,18-23,26,31-35H,5,12,17,24-25H2,1-4H3,(H,40,45)(H,41,47)(H,42,46)/b23-22-
InChI KeyJMILOTKBOBTKBB-FCQUAONHSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentOligopeptides
Alternative Parents
Substituents
  • Alpha-oligopeptide
  • Cyclic alpha peptide
  • Isoleucine or derivatives
  • Macrolactam
  • Proline or derivatives
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid amide
  • Alpha-amino acid or derivatives
  • N-acylpyrrolidine
  • Pyrrolidine carboxylic acid or derivatives
  • Pyrrolidine-2-carboxamide
  • Alkyl aryl ether
  • Benzenoid
  • Monocyclic benzene moiety
  • Tertiary carboxylic acid amide
  • Pyrrolidine
  • Tertiary aliphatic amine
  • Tertiary amine
  • Secondary carboxylic acid amide
  • Amino acid or derivatives
  • Carboxamide group
  • Lactam
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Ether
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Carbonyl group
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Amine
  • Organooxygen compound
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point233 - 235 °CNot Available
Boiling PointNot AvailableNot Available
Water Solubility0.00046 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0049 g/LALOGPS
logP4.56ALOGPS
logP4.51ChemAxon
logS-5.1ALOGPS
pKa (Strongest Acidic)10.91ChemAxon
pKa (Strongest Basic)8.09ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area120.08 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity188.57 m³·mol⁻¹ChemAxon
Polarizability70.59 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+256.33230932474
DeepCCS[M-H]-254.50730932474
DeepCCS[M-2H]-287.74930932474
DeepCCS[M+Na]+261.93730932474
AllCCS[M+H]+258.232859911
AllCCS[M+H-H2O]+257.532859911
AllCCS[M+NH4]+258.832859911
AllCCS[M+Na]+258.932859911
AllCCS[M-H]-226.632859911
AllCCS[M+Na-2H]-229.932859911
AllCCS[M+HCOO]-233.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Jubanine CCCC(C)C(N(C)C)C(=O)N1CCCC1C(=O)NC1C(OC2=CC=C(C=C2)\C=C/NC(=O)C(CC2=CC=CC=C2)NC1=O)C1=CC=CC=C16617.1Standard polar33892256
Jubanine CCCC(C)C(N(C)C)C(=O)N1CCCC1C(=O)NC1C(OC2=CC=C(C=C2)\C=C/NC(=O)C(CC2=CC=CC=C2)NC1=O)C1=CC=CC=C14563.3Standard non polar33892256
Jubanine CCCC(C)C(N(C)C)C(=O)N1CCCC1C(=O)NC1C(OC2=CC=C(C=C2)\C=C/NC(=O)C(CC2=CC=CC=C2)NC1=O)C1=CC=CC=C15449.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Jubanine C,1TMS,isomer #1CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)NC(CC2=CC=CC=C2)C(=O)N/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C)N(C)C5196.6Semi standard non polar33892256
Jubanine C,1TMS,isomer #1CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)NC(CC2=CC=CC=C2)C(=O)N/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C)N(C)C4559.0Standard non polar33892256
Jubanine C,1TMS,isomer #2CCC(C)C(C(=O)N1CCCC1C(=O)NC1C(=O)NC(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)N(C)C5073.2Semi standard non polar33892256
Jubanine C,1TMS,isomer #2CCC(C)C(C(=O)N1CCCC1C(=O)NC1C(=O)NC(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)N(C)C4597.0Standard non polar33892256
Jubanine C,1TMS,isomer #3CCC(C)C(C(=O)N1CCCC1C(=O)NC1C(=O)N([Si](C)(C)C)C(CC2=CC=CC=C2)C(=O)N/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)N(C)C5105.1Semi standard non polar33892256
Jubanine C,1TMS,isomer #3CCC(C)C(C(=O)N1CCCC1C(=O)NC1C(=O)N([Si](C)(C)C)C(CC2=CC=CC=C2)C(=O)N/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)N(C)C4572.9Standard non polar33892256
Jubanine C,2TMS,isomer #1CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)N([Si](C)(C)C)C(CC2=CC=CC=C2)C(=O)N/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C)N(C)C4993.4Semi standard non polar33892256
Jubanine C,2TMS,isomer #1CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)N([Si](C)(C)C)C(CC2=CC=CC=C2)C(=O)N/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C)N(C)C4608.4Standard non polar33892256
Jubanine C,2TMS,isomer #2CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)NC(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C)N(C)C4926.3Semi standard non polar33892256
Jubanine C,2TMS,isomer #2CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)NC(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C)N(C)C4613.9Standard non polar33892256
Jubanine C,2TMS,isomer #3CCC(C)C(C(=O)N1CCCC1C(=O)NC1C(=O)N([Si](C)(C)C)C(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)N(C)C4863.7Semi standard non polar33892256
Jubanine C,2TMS,isomer #3CCC(C)C(C(=O)N1CCCC1C(=O)NC1C(=O)N([Si](C)(C)C)C(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)N(C)C4601.2Standard non polar33892256
Jubanine C,3TMS,isomer #1CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)N([Si](C)(C)C)C(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C)N(C)C4825.1Semi standard non polar33892256
Jubanine C,3TMS,isomer #1CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)N([Si](C)(C)C)C(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C)N(C)C4606.7Standard non polar33892256
Jubanine C,1TBDMS,isomer #1CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)NC(CC2=CC=CC=C2)C(=O)N/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C(C)(C)C)N(C)C5391.4Semi standard non polar33892256
Jubanine C,1TBDMS,isomer #1CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)NC(CC2=CC=CC=C2)C(=O)N/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C(C)(C)C)N(C)C4723.1Standard non polar33892256
Jubanine C,1TBDMS,isomer #2CCC(C)C(C(=O)N1CCCC1C(=O)NC1C(=O)NC(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C(C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)N(C)C5350.2Semi standard non polar33892256
Jubanine C,1TBDMS,isomer #2CCC(C)C(C(=O)N1CCCC1C(=O)NC1C(=O)NC(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C(C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)N(C)C4730.4Standard non polar33892256
Jubanine C,1TBDMS,isomer #3CCC(C)C(C(=O)N1CCCC1C(=O)NC1C(=O)N([Si](C)(C)C(C)(C)C)C(CC2=CC=CC=C2)C(=O)N/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)N(C)C5373.1Semi standard non polar33892256
Jubanine C,1TBDMS,isomer #3CCC(C)C(C(=O)N1CCCC1C(=O)NC1C(=O)N([Si](C)(C)C(C)(C)C)C(CC2=CC=CC=C2)C(=O)N/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)N(C)C4736.7Standard non polar33892256
Jubanine C,2TBDMS,isomer #1CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)N([Si](C)(C)C(C)(C)C)C(CC2=CC=CC=C2)C(=O)N/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C(C)(C)C)N(C)C5438.6Semi standard non polar33892256
Jubanine C,2TBDMS,isomer #1CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)N([Si](C)(C)C(C)(C)C)C(CC2=CC=CC=C2)C(=O)N/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C(C)(C)C)N(C)C4937.2Standard non polar33892256
Jubanine C,2TBDMS,isomer #2CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)NC(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C(C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C(C)(C)C)N(C)C5384.1Semi standard non polar33892256
Jubanine C,2TBDMS,isomer #2CCC(C)C(C(=O)N1CCCC1C(=O)N(C1C(=O)NC(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C(C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)[Si](C)(C)C(C)(C)C)N(C)C4903.3Standard non polar33892256
Jubanine C,2TBDMS,isomer #3CCC(C)C(C(=O)N1CCCC1C(=O)NC1C(=O)N([Si](C)(C)C(C)(C)C)C(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C(C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)N(C)C5392.0Semi standard non polar33892256
Jubanine C,2TBDMS,isomer #3CCC(C)C(C(=O)N1CCCC1C(=O)NC1C(=O)N([Si](C)(C)C(C)(C)C)C(CC2=CC=CC=C2)C(=O)N([Si](C)(C)C(C)(C)C)/C=C\C2=CC=C(C=C2)OC1C1=CC=CC=C1)N(C)C4883.8Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Jubanine C GC-MS (Non-derivatized) - 70eV, Positivesplash10-0r00-9620030000-26b1cca48887039958832017-09-01Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Jubanine C 10V, Positive-QTOFsplash10-00or-0210829000-bd3dd28c089b83b496a52016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Jubanine C 20V, Positive-QTOFsplash10-03fr-5900600000-825163d37baabd3205c72016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Jubanine C 40V, Positive-QTOFsplash10-02ml-9200100000-bb05a98195a862c717762016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Jubanine C 10V, Negative-QTOFsplash10-03di-0010129000-e598938481de807846552016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Jubanine C 20V, Negative-QTOFsplash10-03mi-1341697000-083ab9b7f0b5e04ab1932016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Jubanine C 40V, Negative-QTOFsplash10-03mj-9702400000-58081803a63ed0b9f8032016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Jubanine C 10V, Positive-QTOFsplash10-014i-0000029000-af7290061c41c5d324a52021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Jubanine C 20V, Positive-QTOFsplash10-014i-9200038000-e7cc53dc1077e31183542021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Jubanine C 40V, Positive-QTOFsplash10-0006-9100000000-16994bff47579c687bab2021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Jubanine C 10V, Negative-QTOFsplash10-03di-0000039000-4d31cfb331ac5f78b60f2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Jubanine C 20V, Negative-QTOFsplash10-0ir0-3100698000-bddda65f833471d9177e2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Jubanine C 40V, Negative-QTOFsplash10-002f-9605300000-7412c092b5d1b6d7e11e2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB016319
KNApSAcK IDC00027401
Chemspider ID35014397
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131752168
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1859741
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .