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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 22:50:44 UTC
Update Date2022-03-07 02:55:25 UTC
HMDB IDHMDB0037592
Secondary Accession Numbers
  • HMDB37592
Metabolite Identification
Common NameOryzalide B
DescriptionOryzalide B belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety. Oryzalide B is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563863057
SynonymsNot Available
Chemical FormulaC19H28O4
Average Molecular Weight320.4232
Monoisotopic Molecular Weight320.198759384
IUPAC Name8,15-dihydroxy-5,5,9-trimethyl-14-methylidene-7-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-6-one
Traditional Name8,15-dihydroxy-5,5,9-trimethyl-14-methylidene-7-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-6-one
CAS Registry Number134885-94-2
SMILES
CC1(C)C2CCC34CC(CCC3C2(C)C(O)OC1=O)C(=C)C4O
InChI Identifier
InChI=1S/C19H28O4/c1-10-11-5-6-13-18(4)12(7-8-19(13,9-11)14(10)20)17(2,3)15(21)23-16(18)22/h11-14,16,20,22H,1,5-9H2,2-4H3
InChI KeyQINXJSIKYUBGSE-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTerpene lactones
Direct ParentDiterpene lactones
Alternative Parents
Substituents
  • Diterpene lactone
  • Diterpenoid
  • Kaurane diterpenoid
  • Naphthopyran
  • Naphthalene
  • Delta valerolactone
  • Delta_valerolactone
  • Pyran
  • Oxane
  • Cyclic alcohol
  • Carboxylic acid ester
  • Hemiacetal
  • Lactone
  • Secondary alcohol
  • Organoheterocyclic compound
  • Oxacycle
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Alcohol
  • Carbonyl group
  • Organooxygen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point196 - 197 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.46 g/LALOGPS
logP2.02ALOGPS
logP2.77ChemAxon
logS-2.8ALOGPS
pKa (Strongest Acidic)11.8ChemAxon
pKa (Strongest Basic)-0.74ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area66.76 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity85.24 m³·mol⁻¹ChemAxon
Polarizability35.11 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+175.93131661259
DarkChem[M-H]-171.2431661259
DeepCCS[M-2H]-211.53630932474
DeepCCS[M+Na]+186.79130932474
AllCCS[M+H]+177.532859911
AllCCS[M+H-H2O]+174.532859911
AllCCS[M+NH4]+180.332859911
AllCCS[M+Na]+181.132859911
AllCCS[M-H]-183.732859911
AllCCS[M+Na-2H]-183.932859911
AllCCS[M+HCOO]-184.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Oryzalide BCC1(C)C2CCC34CC(CCC3C2(C)C(O)OC1=O)C(=C)C4O3084.0Standard polar33892256
Oryzalide BCC1(C)C2CCC34CC(CCC3C2(C)C(O)OC1=O)C(=C)C4O2408.0Standard non polar33892256
Oryzalide BCC1(C)C2CCC34CC(CCC3C2(C)C(O)OC1=O)C(=C)C4O2734.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Oryzalide B,1TMS,isomer #1C=C1C2CCC3C(CCC4C(C)(C)C(=O)OC(O[Si](C)(C)C)C43C)(C2)C1O2676.7Semi standard non polar33892256
Oryzalide B,1TMS,isomer #2C=C1C2CCC3C(CCC4C(C)(C)C(=O)OC(O)C43C)(C2)C1O[Si](C)(C)C2672.3Semi standard non polar33892256
Oryzalide B,2TMS,isomer #1C=C1C2CCC3C(CCC4C(C)(C)C(=O)OC(O[Si](C)(C)C)C43C)(C2)C1O[Si](C)(C)C2666.5Semi standard non polar33892256
Oryzalide B,1TBDMS,isomer #1C=C1C2CCC3C(CCC4C(C)(C)C(=O)OC(O[Si](C)(C)C(C)(C)C)C43C)(C2)C1O2918.7Semi standard non polar33892256
Oryzalide B,1TBDMS,isomer #2C=C1C2CCC3C(CCC4C(C)(C)C(=O)OC(O)C43C)(C2)C1O[Si](C)(C)C(C)(C)C2912.5Semi standard non polar33892256
Oryzalide B,2TBDMS,isomer #1C=C1C2CCC3C(CCC4C(C)(C)C(=O)OC(O[Si](C)(C)C(C)(C)C)C43C)(C2)C1O[Si](C)(C)C(C)(C)C3108.9Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Oryzalide B GC-MS (Non-derivatized) - 70eV, Positivesplash10-0udi-0291000000-c6c0b1810245dffee93b2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Oryzalide B GC-MS (2 TMS) - 70eV, Positivesplash10-00ba-6095400000-4bce1e6620b7850f54662017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Oryzalide B GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oryzalide B 10V, Positive-QTOFsplash10-0fk9-0069000000-e0b047123c87ed4ccce52016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oryzalide B 20V, Positive-QTOFsplash10-0zmi-0194000000-d6140af28132973aa29d2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oryzalide B 40V, Positive-QTOFsplash10-0bt9-1790000000-06437bc462f811278ffb2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oryzalide B 10V, Negative-QTOFsplash10-014i-0079000000-d302e6f13d901f171aff2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oryzalide B 20V, Negative-QTOFsplash10-0100-0093000000-e7c955ba2ba4079e25be2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oryzalide B 40V, Negative-QTOFsplash10-0gbi-4290000000-5c6a99c5d576c055a49a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oryzalide B 10V, Negative-QTOFsplash10-014i-0009000000-0385a0c55ac9f0aa5ed42021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oryzalide B 20V, Negative-QTOFsplash10-014i-0019000000-4d9e0d81da694a626d7c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oryzalide B 40V, Negative-QTOFsplash10-014r-0359000000-ce0784dfae084a4dc3e72021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oryzalide B 10V, Positive-QTOFsplash10-00di-0009000000-dde817d5797eede4195e2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oryzalide B 20V, Positive-QTOFsplash10-0udi-0279000000-75ffd16971003df693712021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oryzalide B 40V, Positive-QTOFsplash10-0159-3921000000-76281d78e7d82014500c2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB016696
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131752210
PDB IDNot Available
ChEBI ID138787
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.