Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 23:33:38 UTC
Update Date2023-02-21 17:26:27 UTC
HMDB IDHMDB0038276
Secondary Accession Numbers
  • HMDB38276
Metabolite Identification
Common Namecis-3-Hexenyl pyruvate
Descriptioncis-3-Hexenyl pyruvate, also known as (Z)-hex-3-enyl pyruvate or fema 3934, belongs to the class of organic compounds known as alpha-keto acids and derivatives. These are organic compounds containing an aldehyde substituted with a keto group on the adjacent carbon. cis-3-Hexenyl pyruvate has been detected, but not quantified in, celery stalks (Apium graveolens var. dulce) and wild celeries (Apium graveolens). This could make cis-3-hexenyl pyruvate a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on cis-3-Hexenyl pyruvate.
Structure
Data?1677000387
Synonyms
ValueSource
cis-3-Hexenyl pyruvic acidGenerator
(Z)-3-Hexenyl pyruvateHMDB
(Z)-Hex-3-enyl pyruvateHMDB
2-oxo-3-Hexenyl ester(Z)-propanoic acidHMDB
cis-3-HexenylpyruvateHMDB
FEMA 3934HMDB
Propanoic acid, 2-oxo-, (3Z)-3-hexen-1-yl esterHMDB
Propanoic acid, 2-oxo-, (3Z)-3-hexenyl esterHMDB
Pyruvic acid, 3-hexenyl esterHMDB
(3Z)-Hex-3-en-1-yl 2-oxopropanoic acidHMDB
cis-3-Hexen-1-yl pyruvic acidGenerator
Chemical FormulaC9H14O3
Average Molecular Weight170.2057
Monoisotopic Molecular Weight170.094294314
IUPAC Name(3Z)-hex-3-en-1-yl 2-oxopropanoate
Traditional Name(3Z)-hex-3-en-1-yl 2-oxopropanoate
CAS Registry Number68133-76-6
SMILES
CC\C=C/CCOC(=O)C(C)=O
InChI Identifier
InChI=1S/C9H14O3/c1-3-4-5-6-7-12-9(11)8(2)10/h4-5H,3,6-7H2,1-2H3/b5-4-
InChI KeyLKNXTZXOBHAYSR-PLNGDYQASA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as alpha-keto acids and derivatives. These are organic compounds containing an aldehyde substituted with a keto group on the adjacent carbon.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassKeto acids and derivatives
Sub ClassAlpha-keto acids and derivatives
Direct ParentAlpha-keto acids and derivatives
Alternative Parents
Substituents
  • Alpha-keto acid
  • Ketone
  • Carboxylic acid ester
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effect
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling Point75.00 to 77.00 °C. @ 5.00 mm HgThe Good Scents Company Information System
Water Solubility4917 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP1.848 (est)The Good Scents Company Information System
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.53 g/LALOGPS
logP1.92ALOGPS
logP2.3ChemAxon
logS-2.5ALOGPS
pKa (Strongest Acidic)16.9ChemAxon
pKa (Strongest Basic)-7.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area43.37 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity46.95 m³·mol⁻¹ChemAxon
Polarizability18.54 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+140.60231661259
DarkChem[M-H]-136.96831661259
DeepCCS[M+H]+143.34430932474
DeepCCS[M-H]-139.82330932474
DeepCCS[M-2H]-177.16230932474
DeepCCS[M+Na]+152.47930932474
AllCCS[M+H]+140.532859911
AllCCS[M+H-H2O]+136.632859911
AllCCS[M+NH4]+144.132859911
AllCCS[M+Na]+145.132859911
AllCCS[M-H]-140.732859911
AllCCS[M+Na-2H]-142.432859911
AllCCS[M+HCOO]-144.332859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
cis-3-Hexenyl pyruvateCC\C=C/CCOC(=O)C(C)=O1645.2Standard polar33892256
cis-3-Hexenyl pyruvateCC\C=C/CCOC(=O)C(C)=O1118.0Standard non polar33892256
cis-3-Hexenyl pyruvateCC\C=C/CCOC(=O)C(C)=O1221.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
cis-3-Hexenyl pyruvate,1TMS,isomer #1C=C(O[Si](C)(C)C)C(=O)OCC/C=C\CC1390.9Semi standard non polar33892256
cis-3-Hexenyl pyruvate,1TMS,isomer #1C=C(O[Si](C)(C)C)C(=O)OCC/C=C\CC1374.4Standard non polar33892256
cis-3-Hexenyl pyruvate,1TBDMS,isomer #1C=C(O[Si](C)(C)C(C)(C)C)C(=O)OCC/C=C\CC1600.4Semi standard non polar33892256
cis-3-Hexenyl pyruvate,1TBDMS,isomer #1C=C(O[Si](C)(C)C(C)(C)C)C(=O)OCC/C=C\CC1573.7Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - cis-3-Hexenyl pyruvate EI-B (Non-derivatized)splash10-0006-9000000000-b62ed55a2a7c2b31d8e52017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - cis-3-Hexenyl pyruvate EI-B (Non-derivatized)splash10-0006-9000000000-b62ed55a2a7c2b31d8e52018-05-18HMDB team, MONA, MassBankView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-3-Hexenyl pyruvate GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-9000000000-d25fc4765a1fc9051b522017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-3-Hexenyl pyruvate GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-3-Hexenyl pyruvate GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-3-Hexenyl pyruvate 10V, Positive-QTOFsplash10-00di-4900000000-bb92db3ee34d1a297f0c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-3-Hexenyl pyruvate 20V, Positive-QTOFsplash10-001i-9200000000-5a87597e07059472d9162016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-3-Hexenyl pyruvate 40V, Positive-QTOFsplash10-0006-9000000000-2891c63041e042ed7f2c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-3-Hexenyl pyruvate 10V, Negative-QTOFsplash10-014i-2900000000-d0373831d9f1e5e67f4a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-3-Hexenyl pyruvate 20V, Negative-QTOFsplash10-000i-9300000000-a8578c054a6f601961d52016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-3-Hexenyl pyruvate 40V, Negative-QTOFsplash10-000f-9000000000-b374d7640760b504038d2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-3-Hexenyl pyruvate 10V, Positive-QTOFsplash10-003r-9000000000-fdcdb1dccfea94c5cce32021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-3-Hexenyl pyruvate 20V, Positive-QTOFsplash10-0a4l-9000000000-b348686885ae98d5355c2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-3-Hexenyl pyruvate 40V, Positive-QTOFsplash10-0a6u-9000000000-e3c61ba0d9bfea64e6552021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-3-Hexenyl pyruvate 10V, Negative-QTOFsplash10-014i-2900000000-ed536cc208145aeb34f42021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-3-Hexenyl pyruvate 20V, Negative-QTOFsplash10-000l-9000000000-f48ad7582e2c13f1bc932021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-3-Hexenyl pyruvate 40V, Negative-QTOFsplash10-0006-9000000000-404c3ea68af9c1c0028d2021-09-24Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB003918
KNApSAcK IDNot Available
Chemspider ID4515658
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5363291
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1005191
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .