Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 00:00:41 UTC
Update Date2022-03-07 02:55:52 UTC
HMDB IDHMDB0038676
Secondary Accession Numbers
  • HMDB38676
Metabolite Identification
Common Name(2S,2'S)-Pyrosaccharopine
Description(2S,2'S)-Pyrosaccharopine belongs to the class of organic compounds known as proline and derivatives. Proline and derivatives are compounds containing proline or a derivative thereof resulting from reaction of proline at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom (2S,2'S)-Pyrosaccharopine has been detected, but not quantified in, several different foods, such as breakfast cereal, cereals and cereal products, common mushrooms (Agaricus bisporus), mushrooms, and oyster mushrooms (Pleurotus ostreatus). This could make (2S,2's)-pyrosaccharopine a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on (2S,2'S)-Pyrosaccharopine.
Structure
Data?1563863238
Synonyms
ValueSource
1-(5-Amino-5-carboxypentyl)-5-oxopyrrolidine-2-carboxylateHMDB
Chemical FormulaC11H18N2O5
Average Molecular Weight258.271
Monoisotopic Molecular Weight258.121571696
IUPAC Name1-(5-amino-5-carboxypentyl)-5-oxopyrrolidine-2-carboxylic acid
Traditional Name1-(5-amino-5-carboxypentyl)-5-oxopyrrolidine-2-carboxylic acid
CAS Registry Number38495-84-0
SMILES
NC(CCCCN1C(CCC1=O)C(O)=O)C(O)=O
InChI Identifier
InChI=1S/C11H18N2O5/c12-7(10(15)16)3-1-2-6-13-8(11(17)18)4-5-9(13)14/h7-8H,1-6,12H2,(H,15,16)(H,17,18)
InChI KeyKZGLERZNBKMMPP-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as proline and derivatives. Proline and derivatives are compounds containing proline or a derivative thereof resulting from reaction of proline at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentProline and derivatives
Alternative Parents
Substituents
  • Proline or derivatives
  • Alpha-amino acid
  • Oxoproline
  • Pyrrolidine carboxylic acid
  • Pyrrolidine carboxylic acid or derivatives
  • Medium-chain fatty acid
  • Amino fatty acid
  • Heterocyclic fatty acid
  • Dicarboxylic acid or derivatives
  • Pyrrolidone
  • 2-pyrrolidone
  • N-alkylpyrrolidine
  • Fatty acid
  • Fatty acyl
  • Tertiary carboxylic acid amide
  • Pyrrolidine
  • Carboxamide group
  • Lactam
  • Amino acid
  • Carboxylic acid
  • Azacycle
  • Organoheterocyclic compound
  • Primary amine
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Primary aliphatic amine
  • Carbonyl group
  • Organopnictogen compound
  • Amine
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point245 - 248 °CNot Available
Boiling PointNot AvailableNot Available
Water Solubility7719 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility17.7 g/LALOGPS
logP-3ALOGPS
logP-3.1ChemAxon
logS-1.2ALOGPS
pKa (Strongest Acidic)1.97ChemAxon
pKa (Strongest Basic)9.53ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area120.93 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity60.88 m³·mol⁻¹ChemAxon
Polarizability26.06 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+161.38131661259
DarkChem[M-H]-156.19931661259
DeepCCS[M+H]+156.24730932474
DeepCCS[M-H]-153.25630932474
DeepCCS[M-2H]-188.82830932474
DeepCCS[M+Na]+164.7930932474
AllCCS[M+H]+156.432859911
AllCCS[M+H-H2O]+153.132859911
AllCCS[M+NH4]+159.432859911
AllCCS[M+Na]+160.332859911
AllCCS[M-H]-158.932859911
AllCCS[M+Na-2H]-159.032859911
AllCCS[M+HCOO]-159.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(2S,2'S)-PyrosaccharopineNC(CCCCN1C(CCC1=O)C(O)=O)C(O)=O3399.3Standard polar33892256
(2S,2'S)-PyrosaccharopineNC(CCCCN1C(CCC1=O)C(O)=O)C(O)=O2239.7Standard non polar33892256
(2S,2'S)-PyrosaccharopineNC(CCCCN1C(CCC1=O)C(O)=O)C(O)=O2510.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(2S,2'S)-Pyrosaccharopine,1TMS,isomer #1C[Si](C)(C)OC(=O)C1CCC(=O)N1CCCCC(N)C(=O)O2334.2Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,1TMS,isomer #2C[Si](C)(C)OC(=O)C(N)CCCCN1C(=O)CCC1C(=O)O2329.8Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,1TMS,isomer #3C[Si](C)(C)NC(CCCCN1C(=O)CCC1C(=O)O)C(=O)O2419.5Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,2TMS,isomer #1C[Si](C)(C)OC(=O)C(N)CCCCN1C(=O)CCC1C(=O)O[Si](C)(C)C2304.0Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,2TMS,isomer #2C[Si](C)(C)NC(CCCCN1C(=O)CCC1C(=O)O[Si](C)(C)C)C(=O)O2379.8Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,2TMS,isomer #3C[Si](C)(C)NC(CCCCN1C(=O)CCC1C(=O)O)C(=O)O[Si](C)(C)C2383.5Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,2TMS,isomer #4C[Si](C)(C)N(C(CCCCN1C(=O)CCC1C(=O)O)C(=O)O)[Si](C)(C)C2528.6Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,3TMS,isomer #1C[Si](C)(C)NC(CCCCN1C(=O)CCC1C(=O)O[Si](C)(C)C)C(=O)O[Si](C)(C)C2369.7Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,3TMS,isomer #1C[Si](C)(C)NC(CCCCN1C(=O)CCC1C(=O)O[Si](C)(C)C)C(=O)O[Si](C)(C)C2448.3Standard non polar33892256
(2S,2'S)-Pyrosaccharopine,3TMS,isomer #2C[Si](C)(C)OC(=O)C1CCC(=O)N1CCCCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C2506.8Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,3TMS,isomer #2C[Si](C)(C)OC(=O)C1CCC(=O)N1CCCCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C2521.2Standard non polar33892256
(2S,2'S)-Pyrosaccharopine,3TMS,isomer #3C[Si](C)(C)OC(=O)C(CCCCN1C(=O)CCC1C(=O)O)N([Si](C)(C)C)[Si](C)(C)C2510.6Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,3TMS,isomer #3C[Si](C)(C)OC(=O)C(CCCCN1C(=O)CCC1C(=O)O)N([Si](C)(C)C)[Si](C)(C)C2520.6Standard non polar33892256
(2S,2'S)-Pyrosaccharopine,4TMS,isomer #1C[Si](C)(C)OC(=O)C1CCC(=O)N1CCCCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C2531.2Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,4TMS,isomer #1C[Si](C)(C)OC(=O)C1CCC(=O)N1CCCCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C2571.9Standard non polar33892256
(2S,2'S)-Pyrosaccharopine,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1CCC(=O)N1CCCCC(N)C(=O)O2595.7Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C(N)CCCCN1C(=O)CCC1C(=O)O2596.9Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)NC(CCCCN1C(=O)CCC1C(=O)O)C(=O)O2671.2Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C(N)CCCCN1C(=O)CCC1C(=O)O[Si](C)(C)C(C)(C)C2772.3Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)NC(CCCCN1C(=O)CCC1C(=O)O[Si](C)(C)C(C)(C)C)C(=O)O2857.8Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)NC(CCCCN1C(=O)CCC1C(=O)O)C(=O)O[Si](C)(C)C(C)(C)C2857.4Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)N(C(CCCCN1C(=O)CCC1C(=O)O)C(=O)O)[Si](C)(C)C(C)(C)C2961.9Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC(CCCCN1C(=O)CCC1C(=O)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C3038.2Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)NC(CCCCN1C(=O)CCC1C(=O)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C3063.4Standard non polar33892256
(2S,2'S)-Pyrosaccharopine,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1CCC(=O)N1CCCCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3167.9Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1CCC(=O)N1CCCCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3111.5Standard non polar33892256
(2S,2'S)-Pyrosaccharopine,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)C(CCCCN1C(=O)CCC1C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3177.9Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)C(CCCCN1C(=O)CCC1C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3139.4Standard non polar33892256
(2S,2'S)-Pyrosaccharopine,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1CCC(=O)N1CCCCC(C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3404.2Semi standard non polar33892256
(2S,2'S)-Pyrosaccharopine,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1CCC(=O)N1CCCCC(C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3322.6Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (2S,2'S)-Pyrosaccharopine GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-9220000000-8b20cbd840e223e2f3832017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2S,2'S)-Pyrosaccharopine GC-MS (2 TMS) - 70eV, Positivesplash10-000i-5491000000-3cd13a1891fbc8b4de842017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2S,2'S)-Pyrosaccharopine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,2'S)-Pyrosaccharopine 10V, Positive-QTOFsplash10-08fr-0290000000-f33dce4e443d51cdd94a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,2'S)-Pyrosaccharopine 20V, Positive-QTOFsplash10-03ea-2960000000-327f4d8a4d59471441422016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,2'S)-Pyrosaccharopine 40V, Positive-QTOFsplash10-001i-9400000000-78afc18073a64de9a5812016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,2'S)-Pyrosaccharopine 10V, Negative-QTOFsplash10-0bt9-0190000000-a59aac8e9ccbc0af01d52016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,2'S)-Pyrosaccharopine 20V, Negative-QTOFsplash10-03di-3690000000-2b214856aca66f7714b02016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,2'S)-Pyrosaccharopine 40V, Negative-QTOFsplash10-001i-9300000000-48c7c56a787d60fc139d2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,2'S)-Pyrosaccharopine 10V, Negative-QTOFsplash10-06vi-0950000000-ea2c2e06ca57635ae81a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,2'S)-Pyrosaccharopine 20V, Negative-QTOFsplash10-06vi-5960000000-6b8efa38947b07c4de732021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,2'S)-Pyrosaccharopine 40V, Negative-QTOFsplash10-0006-9400000000-d884eb27e72f98a8ee642021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,2'S)-Pyrosaccharopine 10V, Positive-QTOFsplash10-0a59-3290000000-c25d73747de5c2f6caf22021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,2'S)-Pyrosaccharopine 20V, Positive-QTOFsplash10-01x0-6940000000-9d5bac7009aad607b4a52021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,2'S)-Pyrosaccharopine 40V, Positive-QTOFsplash10-001i-9100000000-3d6e2d419ea8731f488c2021-09-22Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB018080
KNApSAcK IDNot Available
Chemspider ID35014632
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131752421
PDB IDNot Available
ChEBI ID173839
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1870461
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .