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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 00:30:22 UTC
Update Date2022-03-07 02:56:05 UTC
HMDB IDHMDB0039139
Secondary Accession Numbers
  • HMDB39139
Metabolite Identification
Common NameHericenone D
DescriptionHericenone D belongs to the class of organic compounds known as aromatic monoterpenoids. These are monoterpenoids containing at least one aromatic ring. Based on a literature review a significant number of articles have been published on Hericenone D.
Structure
Data?1563863320
Synonyms
ValueSource
bicyclo(3.2.0)Hepta-2,6-dieneHMDB
bicyclo[3.2.0]Hepta-2,6-dieneHMDB
[4-(3,7-Dimethyl-5-oxoocta-2,6-dien-1-yl)-2-formyl-3-hydroxy-5-methoxyphenyl]methyl octadecanoic acidGenerator
Hericenone DMeSH
Chemical FormulaC37H58O6
Average Molecular Weight598.8528
Monoisotopic Molecular Weight598.423339588
IUPAC Name{4-[(2E)-3,7-dimethyl-5-oxoocta-2,6-dien-1-yl]-2-formyl-3-hydroxy-5-methoxyphenyl}methyl octadecanoate
Traditional Name{4-[(2E)-3,7-dimethyl-5-oxoocta-2,6-dien-1-yl]-2-formyl-3-hydroxy-5-methoxyphenyl}methyl octadecanoate
CAS Registry Number137592-04-2
SMILES
CCCCCCCCCCCCCCCCCC(=O)OCC1=CC(OC)=C(C\C=C(/C)CC(=O)C=C(C)C)C(O)=C1C=O
InChI Identifier
InChI=1S/C37H58O6/c1-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-36(40)43-28-31-26-35(42-5)33(37(41)34(31)27-38)23-22-30(4)25-32(39)24-29(2)3/h22,24,26-27,41H,6-21,23,25,28H2,1-5H3/b30-22+
InChI KeyZTJZNRQMSBGEOJ-JBASAIQMSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as aromatic monoterpenoids. These are monoterpenoids containing at least one aromatic ring.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassMonoterpenoids
Direct ParentAromatic monoterpenoids
Alternative Parents
Substituents
  • Aromatic monoterpenoid
  • Benzyloxycarbonyl
  • Methoxyphenol
  • Monocyclic monoterpenoid
  • Hydroxybenzaldehyde
  • Anisole
  • Phenoxy compound
  • Benzaldehyde
  • Benzoyl
  • Phenol ether
  • Methoxybenzene
  • Aryl-aldehyde
  • Phenol
  • Alkyl aryl ether
  • Fatty acid ester
  • 1-hydroxy-4-unsubstituted benzenoid
  • Fatty acyl
  • Benzenoid
  • Monocyclic benzene moiety
  • Vinylogous acid
  • Alpha,beta-unsaturated ketone
  • Acryloyl-group
  • Enone
  • Ketone
  • Carboxylic acid ester
  • Ether
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Hydrocarbon derivative
  • Aldehyde
  • Organic oxygen compound
  • Organic oxide
  • Organooxygen compound
  • Carbonyl group
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point41 - 43 °CNot Available
Boiling PointNot AvailableNot Available
Water Solubility5.7e-09 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.00011 g/LALOGPS
logP8.5ALOGPS
logP11.49ChemAxon
logS-6.7ALOGPS
pKa (Strongest Acidic)8ChemAxon
pKa (Strongest Basic)-4.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area89.9 ŲChemAxon
Rotatable Bond Count26ChemAxon
Refractivity179.36 m³·mol⁻¹ChemAxon
Polarizability73.99 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+243.65330932474
DeepCCS[M-H]-241.25830932474
DeepCCS[M-2H]-274.14130932474
DeepCCS[M+Na]+249.93130932474
AllCCS[M+H]+245.832859911
AllCCS[M+H-H2O]+245.032859911
AllCCS[M+NH4]+246.532859911
AllCCS[M+Na]+246.732859911
AllCCS[M-H]-232.932859911
AllCCS[M+Na-2H]-238.332859911
AllCCS[M+HCOO]-244.332859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Hericenone DCCCCCCCCCCCCCCCCCC(=O)OCC1=CC(OC)=C(C\C=C(/C)CC(=O)C=C(C)C)C(O)=C1C=O5419.1Standard polar33892256
Hericenone DCCCCCCCCCCCCCCCCCC(=O)OCC1=CC(OC)=C(C\C=C(/C)CC(=O)C=C(C)C)C(O)=C1C=O4132.2Standard non polar33892256
Hericenone DCCCCCCCCCCCCCCCCCC(=O)OCC1=CC(OC)=C(C\C=C(/C)CC(=O)C=C(C)C)C(O)=C1C=O4477.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Hericenone D,1TMS,isomer #1CCCCCCCCCCCCCCCCCC(=O)OCC1=CC(OC)=C(C/C=C(\C)CC(=O)C=C(C)C)C(O[Si](C)(C)C)=C1C=O4402.8Semi standard non polar33892256
Hericenone D,1TMS,isomer #2CCCCCCCCCCCCCCCCCC(=O)OCC1=CC(OC)=C(C/C=C(\C)C=C(C=C(C)C)O[Si](C)(C)C)C(O)=C1C=O4546.7Semi standard non polar33892256
Hericenone D,2TMS,isomer #1CCCCCCCCCCCCCCCCCC(=O)OCC1=CC(OC)=C(C/C=C(\C)C=C(C=C(C)C)O[Si](C)(C)C)C(O[Si](C)(C)C)=C1C=O4527.4Semi standard non polar33892256
Hericenone D,2TMS,isomer #1CCCCCCCCCCCCCCCCCC(=O)OCC1=CC(OC)=C(C/C=C(\C)C=C(C=C(C)C)O[Si](C)(C)C)C(O[Si](C)(C)C)=C1C=O4051.9Standard non polar33892256
Hericenone D,1TBDMS,isomer #1CCCCCCCCCCCCCCCCCC(=O)OCC1=CC(OC)=C(C/C=C(\C)CC(=O)C=C(C)C)C(O[Si](C)(C)C(C)(C)C)=C1C=O4636.3Semi standard non polar33892256
Hericenone D,1TBDMS,isomer #2CCCCCCCCCCCCCCCCCC(=O)OCC1=CC(OC)=C(C/C=C(\C)C=C(C=C(C)C)O[Si](C)(C)C(C)(C)C)C(O)=C1C=O4813.9Semi standard non polar33892256
Hericenone D,2TBDMS,isomer #1CCCCCCCCCCCCCCCCCC(=O)OCC1=CC(OC)=C(C/C=C(\C)C=C(C=C(C)C)O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=C1C=O5008.0Semi standard non polar33892256
Hericenone D,2TBDMS,isomer #1CCCCCCCCCCCCCCCCCC(=O)OCC1=CC(OC)=C(C/C=C(\C)C=C(C=C(C)C)O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=C1C=O4350.1Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Hericenone D GC-MS (Non-derivatized) - 70eV, Positivesplash10-05o0-9353020000-c7e672fb26911a1c53992017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Hericenone D GC-MS (1 TMS) - 70eV, Positivesplash10-0a59-9342013000-7547fc73e720957892352017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Hericenone D GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Hericenone D GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Hericenone D GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Hericenone D GC-MS ("Hericenone D,1TMS,#1" TMS) - 70eV, PositiveNot Available2021-10-20Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Hericenone D 10V, Positive-QTOFsplash10-015a-0043090000-6306b0ae719bfb337dd52016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Hericenone D 20V, Positive-QTOFsplash10-014i-2192130000-0b2ae6fd1fbdd28c26722016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Hericenone D 40V, Positive-QTOFsplash10-0159-3290010000-399120c309f44a2371c62016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Hericenone D 10V, Negative-QTOFsplash10-00kb-1071090000-fc5ed311a5b54b81ab7f2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Hericenone D 20V, Negative-QTOFsplash10-0159-3092030000-e5b6d2e17a124e6d63732016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Hericenone D 40V, Negative-QTOFsplash10-066u-8093010000-6159f6734d93ebfbf5ef2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Hericenone D 10V, Negative-QTOFsplash10-0002-0057090000-3c19688820e14c09bfe32021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Hericenone D 20V, Negative-QTOFsplash10-015a-0091010000-b6b044a4c49a1570d0ed2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Hericenone D 40V, Negative-QTOFsplash10-01bi-1290130000-d5d379c0dd1a7b6f8bf02021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Hericenone D 10V, Positive-QTOFsplash10-014j-1054090000-7b8e4bf895c6216b50ca2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Hericenone D 20V, Positive-QTOFsplash10-017i-2492000000-e15bc467c54b6e815b922021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Hericenone D 40V, Positive-QTOFsplash10-014i-2294000000-f6c7f956e326a2857ef72021-09-23Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB018659
KNApSAcK IDNot Available
Chemspider ID30777328
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound15658906
PDB IDNot Available
ChEBI ID172768
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1874601
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.