Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 02:41:16 UTC
Update Date2022-03-07 02:56:51 UTC
HMDB IDHMDB0041046
Secondary Accession Numbers
  • HMDB41046
Metabolite Identification
Common NameMarshmine
DescriptionMarshmine belongs to the class of organic compounds known as acridones. These are acridines containing a ketone group attached to the C9 carbon atom of the acridine moiety. Marshmine has been detected, but not quantified in, citrus. This could make marshmine a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Marshmine.
Structure
Data?1563863618
Synonyms
ValueSource
(-)-MarshmineHMDB
1,5-Dihydroxy-4-(2-hydroxy-3-methyl-3-butenyl)-3-methoxy-10-methylacridoneHMDB
Chemical FormulaC20H21NO5
Average Molecular Weight355.3844
Monoisotopic Molecular Weight355.141972787
IUPAC Name1,5-dihydroxy-4-(2-hydroxy-3-methylbut-3-en-1-yl)-3-methoxy-10-methyl-9,10-dihydroacridin-9-one
Traditional Name1,5-dihydroxy-4-(2-hydroxy-3-methylbut-3-en-1-yl)-3-methoxy-10-methylacridin-9-one
CAS Registry Number160927-88-8
SMILES
COC1=C(CC(O)C(C)=C)C2=C(C(O)=C1)C(=O)C1=C(N2C)C(O)=CC=C1
InChI Identifier
InChI=1S/C20H21NO5/c1-10(2)14(23)8-12-16(26-4)9-15(24)17-19(12)21(3)18-11(20(17)25)6-5-7-13(18)22/h5-7,9,14,22-24H,1,8H2,2-4H3
InChI KeyDBEWENVYSYATOB-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as acridones. These are acridines containing a ketone group attached to the C9 carbon atom of the acridine moiety.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassQuinolines and derivatives
Sub ClassBenzoquinolines
Direct ParentAcridones
Alternative Parents
Substituents
  • Acridone
  • Dihydroquinolone
  • 8-hydroxyquinoline
  • Dihydroquinoline
  • Anisole
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Pyridine
  • Benzenoid
  • Vinylogous amide
  • Vinylogous acid
  • Heteroaromatic compound
  • Secondary alcohol
  • Ether
  • Azacycle
  • Alcohol
  • Organic nitrogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility2.33 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.35 g/LALOGPS
logP2.23ALOGPS
logP3.56ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)9.14ChemAxon
pKa (Strongest Basic)-2.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area90.23 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity99.07 m³·mol⁻¹ChemAxon
Polarizability37.61 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+182.45931661259
DarkChem[M-H]-181.59231661259
DeepCCS[M+H]+186.6830932474
DeepCCS[M-H]-184.32230932474
DeepCCS[M-2H]-218.09830932474
DeepCCS[M+Na]+193.32130932474
AllCCS[M+H]+184.332859911
AllCCS[M+H-H2O]+181.232859911
AllCCS[M+NH4]+187.232859911
AllCCS[M+Na]+188.132859911
AllCCS[M-H]-188.932859911
AllCCS[M+Na-2H]-188.732859911
AllCCS[M+HCOO]-188.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
MarshmineCOC1=C(CC(O)C(C)=C)C2=C(C(O)=C1)C(=O)C1=C(N2C)C(O)=CC=C14294.0Standard polar33892256
MarshmineCOC1=C(CC(O)C(C)=C)C2=C(C(O)=C1)C(=O)C1=C(N2C)C(O)=CC=C12666.2Standard non polar33892256
MarshmineCOC1=C(CC(O)C(C)=C)C2=C(C(O)=C1)C(=O)C1=C(N2C)C(O)=CC=C13311.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Marshmine,1TMS,isomer #1C=C(C)C(CC1=C(OC)C=C(O)C2=C1N(C)C1=C(O)C=CC=C1C2=O)O[Si](C)(C)C3146.1Semi standard non polar33892256
Marshmine,1TMS,isomer #2C=C(C)C(O)CC1=C(OC)C=C(O[Si](C)(C)C)C2=C1N(C)C1=C(O)C=CC=C1C2=O3187.3Semi standard non polar33892256
Marshmine,1TMS,isomer #3C=C(C)C(O)CC1=C(OC)C=C(O)C2=C1N(C)C1=C(O[Si](C)(C)C)C=CC=C1C2=O3146.4Semi standard non polar33892256
Marshmine,2TMS,isomer #1C=C(C)C(CC1=C(OC)C=C(O[Si](C)(C)C)C2=C1N(C)C1=C(O)C=CC=C1C2=O)O[Si](C)(C)C3062.5Semi standard non polar33892256
Marshmine,2TMS,isomer #2C=C(C)C(CC1=C(OC)C=C(O)C2=C1N(C)C1=C(O[Si](C)(C)C)C=CC=C1C2=O)O[Si](C)(C)C3049.9Semi standard non polar33892256
Marshmine,2TMS,isomer #3C=C(C)C(O)CC1=C(OC)C=C(O[Si](C)(C)C)C2=C1N(C)C1=C(O[Si](C)(C)C)C=CC=C1C2=O3126.6Semi standard non polar33892256
Marshmine,3TMS,isomer #1C=C(C)C(CC1=C(OC)C=C(O[Si](C)(C)C)C2=C1N(C)C1=C(O[Si](C)(C)C)C=CC=C1C2=O)O[Si](C)(C)C3113.6Semi standard non polar33892256
Marshmine,1TBDMS,isomer #1C=C(C)C(CC1=C(OC)C=C(O)C2=C1N(C)C1=C(O)C=CC=C1C2=O)O[Si](C)(C)C(C)(C)C3394.6Semi standard non polar33892256
Marshmine,1TBDMS,isomer #2C=C(C)C(O)CC1=C(OC)C=C(O[Si](C)(C)C(C)(C)C)C2=C1N(C)C1=C(O)C=CC=C1C2=O3394.5Semi standard non polar33892256
Marshmine,1TBDMS,isomer #3C=C(C)C(O)CC1=C(OC)C=C(O)C2=C1N(C)C1=C(O[Si](C)(C)C(C)(C)C)C=CC=C1C2=O3347.9Semi standard non polar33892256
Marshmine,2TBDMS,isomer #1C=C(C)C(CC1=C(OC)C=C(O[Si](C)(C)C(C)(C)C)C2=C1N(C)C1=C(O)C=CC=C1C2=O)O[Si](C)(C)C(C)(C)C3519.5Semi standard non polar33892256
Marshmine,2TBDMS,isomer #2C=C(C)C(CC1=C(OC)C=C(O)C2=C1N(C)C1=C(O[Si](C)(C)C(C)(C)C)C=CC=C1C2=O)O[Si](C)(C)C(C)(C)C3500.9Semi standard non polar33892256
Marshmine,2TBDMS,isomer #3C=C(C)C(O)CC1=C(OC)C=C(O[Si](C)(C)C(C)(C)C)C2=C1N(C)C1=C(O[Si](C)(C)C(C)(C)C)C=CC=C1C2=O3538.2Semi standard non polar33892256
Marshmine,3TBDMS,isomer #1C=C(C)C(CC1=C(OC)C=C(O[Si](C)(C)C(C)(C)C)C2=C1N(C)C1=C(O[Si](C)(C)C(C)(C)C)C=CC=C1C2=O)O[Si](C)(C)C(C)(C)C3713.1Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Marshmine GC-MS (Non-derivatized) - 70eV, Positivesplash10-000f-8059000000-18a0754ebecaeadf64fa2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Marshmine GC-MS (3 TMS) - 70eV, Positivesplash10-0a4i-5100490000-de729b363ac4bcda960d2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Marshmine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Marshmine 10V, Positive-QTOFsplash10-052r-0009000000-31504abbb7fd5d496a6a2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Marshmine 20V, Positive-QTOFsplash10-00ei-9054000000-0889bdc2aefabd5a4b5c2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Marshmine 40V, Positive-QTOFsplash10-00r6-9071000000-95a5497060518fd2d0802017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Marshmine 10V, Negative-QTOFsplash10-0udi-0019000000-d03578d930e2aa17ebc62017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Marshmine 20V, Negative-QTOFsplash10-00di-0095000000-b14826b164cffe4d75142017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Marshmine 40V, Negative-QTOFsplash10-014l-3293000000-4fc755af720060a584392017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Marshmine 10V, Negative-QTOFsplash10-0udi-0009000000-67797024655abe3b88c52021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Marshmine 20V, Negative-QTOFsplash10-0udi-0029000000-05fcf8e69f5e9a1501882021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Marshmine 40V, Negative-QTOFsplash10-0zfr-3198000000-614e1e102b03c45718ae2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Marshmine 10V, Positive-QTOFsplash10-0a4i-0009000000-164e883e936c276bc0fc2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Marshmine 20V, Positive-QTOFsplash10-0a5i-0059000000-03a696664ede12559bdb2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Marshmine 40V, Positive-QTOFsplash10-0ab9-0192000000-aa5611e2e36703b35d3b2021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB020919
KNApSAcK IDC00024218
Chemspider ID35015086
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound101696941
PDB IDNot Available
ChEBI ID174772
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1889031
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .