Hmdb loader
Record Information
Version5.0
StatusDetected and Quantified
Creation Date2013-04-09 21:16:32 UTC
Update Date2023-02-21 17:29:39 UTC
HMDB IDHMDB0059963
Secondary Accession Numbers
  • HMDB59963
Metabolite Identification
Common Name1,3,5-Trimethoxybenzene
Description1,3,5-Trimethoxybenzene has been found to be a potential biomarker of flavonoid intake in human. Flavonoids are phytochemicals that are widespread in the human diet. Despite limitations in their bioavailability, experimental and epidemiological data suggest health benefits of flavonoid consumption. Valid biomarkers of flavonoid intake may be useful for estimating exposure in a range of settings. However, to date, few useful flavonoid biomarkers have been identified. A recent urine analysis suggested that urinary 4-ethylphenol, benzoic acid, and 4-ethylbenzoic acid may be potential biomarkers of quercetin intake and 1,3,5-trimethoxybenzene, 4-O-methylgallic acid, 3-O-methylgallic acid, and gallic acid may be potential markers of epigallocatechin gallate intake. Potential biomarkers of (-)-epicatechin were not identified. These urinary biomarkers may provide an accurate indication of flavonoid exposure (PMID: 19812218 ).
Structure
Data?1677000579
Synonyms
ValueSource
Phloroglucinol trimethyl etherChEBI
Sym-trimethoxybenzeneChEBI
1,3,5-TrimethoxybenzolHMDB
TrimethylphloroglucinolHMDB
Chemical FormulaC9H12O3
Average Molecular Weight168.1898
Monoisotopic Molecular Weight168.07864425
IUPAC Name1,3,5-trimethoxybenzene
Traditional Name1,3,5-trimethoxybenzene
CAS Registry Number621-23-8
SMILES
COC1=CC(OC)=CC(OC)=C1
InChI Identifier
InChI=1S/C9H12O3/c1-10-7-4-8(11-2)6-9(5-7)12-3/h4-6H,1-3H3
InChI KeyLKUDPHPHKOZXCD-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as anisoles. These are organic compounds containing a methoxybenzene or a derivative thereof.
KingdomOrganic compounds
Super ClassBenzenoids
ClassPhenol ethers
Sub ClassAnisoles
Direct ParentAnisoles
Alternative Parents
Substituents
  • Phenoxy compound
  • Methoxybenzene
  • Anisole
  • Alkyl aryl ether
  • Monocyclic benzene moiety
  • Ether
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility1.36 g/LALOGPS
logP1.96ALOGPS
logP1.5ChemAxon
logS-2.1ALOGPS
pKa (Strongest Basic)-4.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area27.69 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity45.45 m³·mol⁻¹ChemAxon
Polarizability17.57 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+138.43531661259
DarkChem[M-H]-137.93731661259
DeepCCS[M+H]+135.9930932474
DeepCCS[M-H]-132.1630932474
DeepCCS[M-2H]-169.67730932474
DeepCCS[M+Na]+145.21730932474
AllCCS[M+H]+135.632859911
AllCCS[M+H-H2O]+131.232859911
AllCCS[M+NH4]+139.732859911
AllCCS[M+Na]+140.932859911
AllCCS[M-H]-134.932859911
AllCCS[M+Na-2H]-136.232859911
AllCCS[M+HCOO]-137.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
1,3,5-TrimethoxybenzeneCOC1=CC(OC)=CC(OC)=C12190.8Standard polar33892256
1,3,5-TrimethoxybenzeneCOC1=CC(OC)=CC(OC)=C11354.8Standard non polar33892256
1,3,5-TrimethoxybenzeneCOC1=CC(OC)=CC(OC)=C11399.8Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - 1,3,5-Trimethoxybenzene EI-B (Non-derivatized)splash10-014i-0900000000-1ec4b60c1463858d3e542017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - 1,3,5-Trimethoxybenzene EI-B (Non-derivatized)splash10-014i-0900000000-1ec4b60c1463858d3e542018-05-18HMDB team, MONA, MassBankView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1,3,5-Trimethoxybenzene GC-MS (Non-derivatized) - 70eV, Positivesplash10-014i-0900000000-6c353a008c04d365dbb72017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1,3,5-Trimethoxybenzene GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,3,5-Trimethoxybenzene 10V, Positive-QTOFsplash10-014i-0900000000-25d28b6253050c1451ee2015-05-27Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,3,5-Trimethoxybenzene 20V, Positive-QTOFsplash10-014i-0900000000-ec8a7c68a54619c509b32015-05-27Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,3,5-Trimethoxybenzene 40V, Positive-QTOFsplash10-06ei-3900000000-92df4d5d463a6dc787392015-05-27Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,3,5-Trimethoxybenzene 10V, Negative-QTOFsplash10-014i-0900000000-7e7c90cffdb3caf8838e2015-05-27Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,3,5-Trimethoxybenzene 20V, Negative-QTOFsplash10-014i-0900000000-6eda8c13b6ae86b7a2cf2015-05-27Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,3,5-Trimethoxybenzene 40V, Negative-QTOFsplash10-0cl9-5900000000-b870333cc4b78cc87a912015-05-27Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
UrineDetected and Quantified0.273 +/- 0.153 umol/mmol creatinineAdult (>18 years old)MaleNormal details
UrineDetected and Quantified0.717 +/- 0.629 umol/mmol creatinineAdult (>18 years old)MaleNormal details
UrineDetected and Quantified0.086 +/- 0.056 umol/mmol creatinineAdult (>18 years old)MaleNormal details
UrineDetected and Quantified2.158 +/- 0.152 umol/mmol creatinineAdult (>18 years old)MaleNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB030005
KNApSAcK IDNot Available
Chemspider ID21111723
KEGG Compound IDNot Available
BioCyc IDCPD-9500
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound69301
PDB IDNot Available
ChEBI ID31038
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Loke WM, Jenner AM, Proudfoot JM, McKinley AJ, Hodgson JM, Halliwell B, Croft KD: A metabolite profiling approach to identify biomarkers of flavonoid intake in humans. J Nutr. 2009 Dec;139(12):2309-14. doi: 10.3945/jn.109.113613. Epub 2009 Oct 7. [PubMed:19812218 ]