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Showing metabocard for 3-Oxodocosanoyl-CoA (HMDB0060215)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-05-09 21:07:39 UTC
Update Date2022-03-07 03:17:41 UTC
HMDB IDHMDB0060215
Secondary Accession Numbers
  • HMDB60215
Metabolite Identification
Common Name3-Oxodocosanoyl-CoA
Description3-Oxodocosanoyl-CoA, also known as 3-keto-C22-CoA or 3-ketobehenoyl-CoA, belongs to the class of organic compounds known as very-long-chain 3-oxoacyl coas. These are organic compounds containing a coenzyme A derivative, which is 3-oxo acylated long aliphatic chain of 22 carbon atoms or more. Thus, 3-oxodocosanoyl-CoA is considered to be a fatty ester lipid molecule. 3-Oxodocosanoyl-CoA is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.
Structure
Data?1583514833
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0060215 (3-Oxodocosanoyl-CoA)

Structure #1
  Mrv1652309042000402D          

 72 74  0  0  0  0            999 V2000
    1.9758   -5.3126    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3084   -4.8277    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7209   -6.0972    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6409   -5.3126    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8959   -6.0972    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2058   -6.7647    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7699   -9.3536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0271   -9.7661    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4843   -9.7661    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1987   -9.3536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9133   -9.7661    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4560   -8.1161    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1987   -8.5286    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4560   -7.2911    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8849   -7.2911    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1705   -6.8785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7415   -6.0535    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8685   -4.9266    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4560   -5.6410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0435   -4.9266    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1705   -6.0535    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.8850   -5.6410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0271   -5.6410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3771   -5.6410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7271   -5.6410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2021   -4.8160    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2021   -6.4659    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5521   -4.8160    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5521   -6.4659    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2021   -5.6410    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5521   -5.6410    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1437   -5.0577    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4109   -6.7647    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4141   -7.5897    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2359   -7.5897    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4109   -7.5897    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    0.4109   -8.4147    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7604   -5.0577    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3736   -5.6097    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0960   -4.3039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0880   -5.1971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3736   -6.4347    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.9165   -4.3902    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.8025   -5.6096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0881   -6.8471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8025   -6.4346    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.5169   -5.1971    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3126   -9.3536    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5981  -10.5911    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5981   -9.7661    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8836   -9.3536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1692  -10.5911    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1692   -9.7661    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4547   -9.3536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2597   -9.7661    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9742   -9.3536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6887   -9.7661    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4030   -9.3536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1176   -9.7661    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8321   -9.3536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5466   -9.7661    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5466  -10.5911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8321  -11.0036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1176  -10.5911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4032  -11.0036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6887  -10.5911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2610   -9.3536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9755   -9.7661    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9755  -10.5911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2610  -11.0036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9742  -11.0036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2597  -10.5911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1 38  1  1  0  0  0
  2  1  1  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  5  3  1  0  0  0  0
  3  6  1  6  0  0  0
  4 32  1  1  0  0  0
  5  4  1  0  0  0  0
  5 33  1  6  0  0  0
  9  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8 48  1  0  0  0  0
 10  9  1  0  0  0  0
 13 10  1  0  0  0  0
 10 11  2  0  0  0  0
 12 14  1  0  0  0  0
 13 12  1  0  0  0  0
 16 14  1  0  0  0  0
 16 15  2  0  0  0  0
 16 21  1  0  0  0  0
 19 17  1  0  0  0  0
 17 23  1  0  0  0  0
 19 18  1  0  0  0  0
 21 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 22  1  6  0  0  0
 23 30  1  0  0  0  0
 30 24  1  0  0  0  0
 24 31  1  0  0  0  0
 31 25  1  0  0  0  0
 32 25  1  0  0  0  0
 30 26  2  0  0  0  0
 30 27  1  0  0  0  0
 31 28  2  0  0  0  0
 31 29  1  0  0  0  0
 33 36  1  0  0  0  0
 36 34  1  0  0  0  0
 36 35  1  0  0  0  0
 36 37  2  0  0  0  0
 39 38  1  0  0  0  0
 40 38  1  0  0  0  0
 41 39  2  0  0  0  0
 42 39  1  0  0  0  0
 43 40  2  0  0  0  0
 44 41  1  0  0  0  0
 43 41  1  0  0  0  0
 45 42  2  0  0  0  0
 46 44  2  0  0  0  0
 47 44  1  0  0  0  0
 46 45  1  0  0  0  0
 48 50  1  0  0  0  0
 50 49  2  0  0  0  0
 50 51  1  0  0  0  0
 51 53  1  0  0  0  0
 53 52  2  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 60 61  1  0  0  0  0
 62 63  1  0  0  0  0
 63 64  1  0  0  0  0
 64 65  1  0  0  0  0
 65 66  1  0  0  0  0
 61 67  1  0  0  0  0
 67 68  1  0  0  0  0
 68 69  1  0  0  0  0
 69 70  1  0  0  0  0
 70 62  1  0  0  0  0
 66 71  1  0  0  0  0
 71 72  1  0  0  0  0
M  END
Download

3D MOL for HMDB0060215 (3-Oxodocosanoyl-CoA)

HMDB0060215
     RDKit          3D
3-Oxodocosanoyl-CoA
148150  0  0  0  0  0  0  0  0999 V2000
    2.3895   -3.2767   -2.8363 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2105   -3.0858   -1.9049 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2117   -4.2131   -2.0643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9519   -3.9640   -1.1229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9873   -5.0755   -1.2600 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4178   -6.4304   -0.9219 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9091   -6.5133    0.5062 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3333   -7.8719    0.7533 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1678   -8.0450    2.1626 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2167   -7.0291    2.5198 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7137   -7.2903    3.9443 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7274   -6.2739    4.3654 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9310   -6.1948    3.4910 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8783   -5.1351    4.0327 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0709   -5.0267    3.0972 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0592   -3.9783    3.5844 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1594   -3.9506    2.5370 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2343   -2.9624    2.7971 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8532   -1.5459    2.9249 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2191   -0.8578    1.8115 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6506    0.2188    2.1312 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1402   -1.2125    0.4013 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2711   -0.2036   -0.3072 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7852    0.7173   -0.8923 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4959   -0.3941   -0.2621 S   0  0  0  0  0  0  0  0  0  0  0  0
    4.6093    0.8391   -1.2113 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1103    0.5584   -0.9871 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8693    0.6904    0.4317 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5969    0.4881    1.0282 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6515    0.1812    0.2566 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4399    0.6398    2.4970 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0584    0.2783    2.9515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9816    1.0983    2.3782 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0631    2.5039    2.5753 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2044    3.0983    3.2704 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1609    3.2900    1.9715 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9371    2.4866    1.1155 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7578    4.5940    1.3739 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9585    5.3313    0.7829 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2127    5.4699    2.4995 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7282    4.5319    0.3017 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1391    3.7629   -0.8141 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1118    3.7992   -1.9798 P   0  0  0  0  0  5  0  0  0  0  0  0
   -0.2420    4.9301   -2.9250 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5599    4.2446   -1.2311 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2277    2.3393   -2.7963 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2979    1.6602   -2.9870 P   0  0  0  0  0  5  0  0  0  0  0  0
   -1.4607    1.1565   -4.4061 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5668    0.3990   -1.8897 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4778    2.8425   -2.7040 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7459    2.2532   -2.6102 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7658    3.3612   -2.3744 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.7108    4.2450   -3.4341 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0115    4.6844   -3.6155 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.1583    5.2349   -4.9593 N   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0913    6.0995   -5.3794 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8904    6.3729   -6.7005 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8165    5.6725   -7.1224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1925    5.5851   -8.3519 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6377    6.3050   -9.4920 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1146    4.7710   -8.4346 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6812    4.0842   -7.3640 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2999    4.1731   -6.1541 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3750    4.9691   -6.0210 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7997    3.3790   -3.5251 C   0  0  2  0  0  0  0  0  0  0  0  0
   -8.1504    3.5881   -3.3016 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1557    2.8046   -2.2607 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.7877    3.4302   -1.1815 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4653    2.2935   -0.1326 P   0  0  0  0  0  5  0  0  0  0  0  0
   -8.6255    1.6425   -0.8324 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2903    1.1365    0.3159 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9658    3.1115    1.2575 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0030   -2.3660   -2.8348 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9445   -3.4790   -3.8506 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9449   -4.1746   -2.5296 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6239   -3.1427   -0.8676 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7402   -2.1151   -2.1389 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6767   -5.1887   -1.7609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1409   -4.3169   -3.1038 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4403   -3.0317   -1.4762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5964   -3.8445   -0.0848 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0060215 (3-Oxodocosanoyl-CoA)

Structure #1
  Mrv1652309042000402D          

 72 74  0  0  0  0            999 V2000
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 62 63  1  0  0  0  0
 63 64  1  0  0  0  0
 64 65  1  0  0  0  0
 65 66  1  0  0  0  0
 61 67  1  0  0  0  0
 67 68  1  0  0  0  0
 68 69  1  0  0  0  0
 69 70  1  0  0  0  0
 70 62  1  0  0  0  0
 66 71  1  0  0  0  0
 71 72  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0060215

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N

> <INCHI_IDENTIFIER>
InChI=1S/C43H76N7O18P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-31(51)26-34(53)72-25-24-45-33(52)22-23-46-41(56)38(55)43(2,3)28-65-71(62,63)68-70(60,61)64-27-32-37(67-69(57,58)59)36(54)42(66-32)50-30-49-35-39(44)47-29-48-40(35)50/h29-30,32,36-38,42,54-55H,4-28H2,1-3H3,(H,45,52)(H,46,56)(H,60,61)(H,62,63)(H2,44,47,48)(H2,57,58,59)/t32-,36-,37-,38+,42-/m1/s1

> <INCHI_KEY>
RKCOGGUHKPTOQJ-GNSUAQHMSA-N

> <FORMULA>
C43H76N7O18P3S

> <MOLECULAR_WEIGHT>
1104.086

> <EXACT_MASS>
1103.418038889

> <JCHEM_ACCEPTOR_COUNT>
18

> <JCHEM_ATOM_COUNT>
148

> <JCHEM_AVERAGE_POLARIZABILITY>
113.67353452601198

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-2,2-dimethyl-3-{[2-({2-[(3-oxodocosanoyl)sulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}propoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid

> <ALOGPS_LOGP>
3.43

> <JCHEM_LOGP>
2.5984380071920707

> <ALOGPS_LOGS>
-3.45

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-4

> <JCHEM_PKA>
1.9001207324090053

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.8209787811249569

> <JCHEM_PKA_STRONGEST_BASIC>
4.006052989892673

> <JCHEM_POLAR_SURFACE_AREA>
380.6999999999999

> <JCHEM_REFRACTIVITY>
264.9471

> <JCHEM_ROTATABLE_BOND_COUNT>
40

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.94e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-keto-C22-coa

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0060215 (3-Oxodocosanoyl-CoA)

HMDB0060215
     RDKit          3D
3-Oxodocosanoyl-CoA
148150  0  0  0  0  0  0  0  0999 V2000
    2.3895   -3.2767   -2.8363 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2105   -3.0858   -1.9049 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2117   -4.2131   -2.0643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9519   -3.9640   -1.1229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9873   -5.0755   -1.2600 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4178   -6.4304   -0.9219 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9091   -6.5133    0.5062 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3333   -7.8719    0.7533 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1678   -8.0450    2.1626 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2167   -7.0291    2.5198 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7137   -7.2903    3.9443 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7274   -6.2739    4.3654 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9310   -6.1948    3.4910 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8783   -5.1351    4.0327 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0709   -5.0267    3.0972 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0592   -3.9783    3.5844 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1594   -3.9506    2.5370 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2343   -2.9624    2.7971 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8532   -1.5459    2.9249 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2191   -0.8578    1.8115 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6506    0.2188    2.1312 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1402   -1.2125    0.4013 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2711   -0.2036   -0.3072 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7852    0.7173   -0.8923 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4959   -0.3941   -0.2621 S   0  0  0  0  0  0  0  0  0  0  0  0
    4.6093    0.8391   -1.2113 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1103    0.5584   -0.9871 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8693    0.6904    0.4317 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5969    0.4881    1.0282 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6515    0.1812    0.2566 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4399    0.6398    2.4970 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0584    0.2783    2.9515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9816    1.0983    2.3782 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0631    2.5039    2.5753 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2044    3.0983    3.2704 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1609    3.2900    1.9715 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9371    2.4866    1.1155 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7578    4.5940    1.3739 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9585    5.3313    0.7829 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2127    5.4699    2.4995 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7282    4.5319    0.3017 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1391    3.7629   -0.8141 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1118    3.7992   -1.9798 P   0  0  0  0  0  5  0  0  0  0  0  0
   -0.2420    4.9301   -2.9250 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5599    4.2446   -1.2311 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2277    2.3393   -2.7963 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2979    1.6602   -2.9870 P   0  0  0  0  0  5  0  0  0  0  0  0
   -1.4607    1.1565   -4.4061 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5668    0.3990   -1.8897 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4778    2.8425   -2.7040 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7459    2.2532   -2.6102 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7658    3.3612   -2.3744 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.7108    4.2450   -3.4341 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0115    4.6844   -3.6155 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.1583    5.2349   -4.9593 N   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0913    6.0995   -5.3794 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8904    6.3729   -6.7005 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8165    5.6725   -7.1224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1925    5.5851   -8.3519 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6377    6.3050   -9.4920 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1146    4.7710   -8.4346 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6812    4.0842   -7.3640 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2999    4.1731   -6.1541 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3750    4.9691   -6.0210 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7997    3.3790   -3.5251 C   0  0  2  0  0  0  0  0  0  0  0  0
   -8.1504    3.5881   -3.3016 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1557    2.8046   -2.2607 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.7877    3.4302   -1.1815 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4653    2.2935   -0.1326 P   0  0  0  0  0  5  0  0  0  0  0  0
   -8.6255    1.6425   -0.8324 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2903    1.1365    0.3159 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9658    3.1115    1.2575 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0030   -2.3660   -2.8348 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9445   -3.4790   -3.8506 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9449   -4.1746   -2.5296 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6239   -3.1427   -0.8676 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7402   -2.1151   -2.1389 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6767   -5.1887   -1.7609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1409   -4.3169   -3.1038 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4403   -3.0317   -1.4762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5964   -3.8445   -0.0848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3029   -5.1184   -2.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8706   -4.8570   -0.6513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6313   -6.7168   -1.6414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2141   -7.2149   -1.0507 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7322   -6.2943    1.2009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1013   -5.7663    0.6581 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0424   -8.6927    0.4743 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5597   -8.0094    0.0829 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6480   -8.0691    2.8974 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6376   -9.0611    2.2015 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7335   -6.0319    2.5377 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0563   -7.0309    1.8066 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1309   -8.3050    4.0369 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8271   -7.1740    4.6177 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2572   -5.2749    4.5133 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0718   -6.5872    5.3921 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4773   -7.1605    3.5331 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6865   -6.0115    2.4310 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3728   -4.1706    4.1963 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2324   -5.4744    5.0336 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6387   -4.7305    2.1137 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704   -5.9945    3.0300 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5200   -3.0399    3.7041 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4998   -4.2637    4.5500 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6613   -4.9741    2.6639 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6788   -3.9567    1.5728 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7210   -3.2717    3.7732 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0498   -3.1158    2.0513 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8148   -0.9730    3.1399 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2643   -1.3866    3.8645 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1873   -1.0848   -0.0242 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8462   -2.2263    0.1399 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7907    1.8556   -0.8687 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8320    0.7834   -2.3107 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4775    1.2123   -1.6014 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9234   -0.5004   -1.3319 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6608    0.9491    1.0641 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6789    1.6950    2.8081 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1416   -0.0941    2.9810 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0435    0.4216    4.0696 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1637   -0.7942    2.8011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7187    0.6282    1.7826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8829    3.4805    2.8406 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.4738    3.9260   -1.4657 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2990    5.3797   -2.8284 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.3862    5.9363  -10.4349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2000    7.1818   -9.4595 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.2473    1.0505    1.3034 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3069    3.0576    1.9795 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
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 47 50  1  0
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 51 52  1  0
 52 53  1  0
 53 54  1  0
 54 55  1  0
 55 56  1  0
 56 57  2  0
 57 58  1  0
 58 59  2  0
 59 60  1  0
 59 61  1  0
 61 62  2  0
 62 63  1  0
 63 64  2  0
 54 65  1  0
 65 66  1  0
 65 67  1  0
 67 68  1  0
 68 69  1  0
 69 70  2  0
 69 71  1  0
 69 72  1  0
 67 52  1  0
 64 55  1  0
 64 58  1  0
  1 73  1  0
  1 74  1  0
  1 75  1  0
  2 76  1  0
  2 77  1  0
  3 78  1  0
  3 79  1  0
  4 80  1  0
  4 81  1  0
  5 82  1  0
  5 83  1  0
  6 84  1  0
  6 85  1  0
  7 86  1  0
  7 87  1  0
  8 88  1  0
  8 89  1  0
  9 90  1  0
  9 91  1  0
 10 92  1  0
 10 93  1  0
 11 94  1  0
 11 95  1  0
 12 96  1  0
 12 97  1  0
 13 98  1  0
 13 99  1  0
 14100  1  0
 14101  1  0
 15102  1  0
 15103  1  0
 16104  1  0
 16105  1  0
 17106  1  0
 17107  1  0
 18108  1  0
 18109  1  0
 19110  1  0
 19111  1  0
 22112  1  0
 22113  1  0
 26114  1  0
 26115  1  0
 27116  1  0
 27117  1  0
 28118  1  0
 31119  1  0
 31120  1  0
 32121  1  0
 32122  1  0
 33123  1  0
 36124  1  1
 37125  1  0
 39126  1  0
 39127  1  0
 39128  1  0
 40129  1  0
 40130  1  0
 40131  1  0
 41132  1  0
 41133  1  0
 45134  1  0
 49135  1  0
 51136  1  0
 51137  1  0
 52138  1  1
 54139  1  1
 56140  1  0
 60141  1  0
 60142  1  0
 62143  1  0
 65144  1  6
 66145  1  0
 67146  1  1
 71147  1  0
 72148  1  0
M  END
Download

PDB for HMDB0060215 (3-Oxodocosanoyl-CoA)

HEADER    PROTEIN                                 04-SEP-20   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: Structure #1                                      
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-20         0                                  
HETATM    1  C   UNK     0       3.688  -9.917   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       2.442  -9.012   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       3.212 -11.381   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.196  -9.917   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.672 -11.381   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       4.117 -12.627   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      -8.904 -17.460   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -7.517 -18.230   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0     -10.237 -18.230   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0     -11.571 -17.460   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0     -12.905 -18.230   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0     -10.185 -15.150   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -11.571 -15.920   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0     -10.185 -13.610   0.000  0.00  0.00           N+0
HETATM   15  O   UNK     0     -12.852 -13.610   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0     -11.518 -12.840   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -8.851 -11.300   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0     -10.955  -9.196   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0     -10.185 -10.530   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -9.415  -9.196   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0     -11.518 -11.300   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0     -12.852 -10.530   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      -7.517 -10.530   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      -4.437 -10.530   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      -1.357 -10.530   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0      -5.977  -8.990   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0      -5.977 -12.070   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0      -2.897  -8.990   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      -2.897 -12.070   0.000  0.00  0.00           O+0
HETATM   30  P   UNK     0      -5.977 -10.530   0.000  0.00  0.00           P+0
HETATM   31  P   UNK     0      -2.897 -10.530   0.000  0.00  0.00           P+0
HETATM   32  C   UNK     0      -0.268  -9.441   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       0.767 -12.627   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0      -0.773 -14.167   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0       2.307 -14.167   0.000  0.00  0.00           O+0
HETATM   36  P   UNK     0       0.767 -14.167   0.000  0.00  0.00           P+0
HETATM   37  O   UNK     0       0.767 -15.707   0.000  0.00  0.00           O+0
HETATM   38  N   UNK     0       5.153  -9.441   0.000  0.00  0.00           N+0
HETATM   39  C   UNK     0       6.297 -10.471   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       5.779  -8.034   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       7.631  -9.701   0.000  0.00  0.00           C+0
HETATM   42  N   UNK     0       6.297 -12.011   0.000  0.00  0.00           N+0
HETATM   43  N   UNK     0       7.311  -8.195   0.000  0.00  0.00           N+0
HETATM   44  C   UNK     0       8.965 -10.471   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       7.631 -12.781   0.000  0.00  0.00           C+0
HETATM   46  N   UNK     0       8.965 -12.011   0.000  0.00  0.00           N+0
HETATM   47  N   UNK     0      10.298  -9.701   0.000  0.00  0.00           N+0
HETATM   48  S   UNK     0      -6.184 -17.460   0.000  0.00  0.00           S+0
HETATM   49  O   UNK     0      -4.850 -19.770   0.000  0.00  0.00           O+0
HETATM   50  C   UNK     0      -4.850 -18.230   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      -3.516 -17.460   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0      -2.183 -19.770   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0      -2.183 -18.230   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      -0.849 -17.460   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0       0.485 -18.230   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0       1.819 -17.460   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0       3.152 -18.230   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0       4.486 -17.460   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0       5.820 -18.230   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0       7.153 -17.460   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0       8.487 -18.230   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0       8.487 -19.770   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0       7.153 -20.540   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0       5.820 -19.770   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0       4.486 -20.540   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0       3.152 -19.770   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0       9.821 -17.460   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0      11.154 -18.230   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0      11.154 -19.770   0.000  0.00  0.00           C+0
HETATM   70  C   UNK     0       9.821 -20.540   0.000  0.00  0.00           C+0
HETATM   71  C   UNK     0       1.819 -20.540   0.000  0.00  0.00           C+0
HETATM   72  C   UNK     0       0.485 -19.770   0.000  0.00  0.00           C+0
CONECT    1   38    2    3                                                  
CONECT    2    1    4                                                       
CONECT    3    1    5    6                                                  
CONECT    4    2   32    5                                                  
CONECT    5    3    4   33                                                  
CONECT    6    3                                                            
CONECT    7    9    8                                                       
CONECT    8    7   48                                                       
CONECT    9    7   10                                                       
CONECT   10    9   13   11                                                  
CONECT   11   10                                                            
CONECT   12   14   13                                                       
CONECT   13   10   12                                                       
CONECT   14   12   16                                                       
CONECT   15   16                                                            
CONECT   16   14   15   21                                                  
CONECT   17   19   23                                                       
CONECT   18   19                                                            
CONECT   19   17   18   21   20                                             
CONECT   20   19                                                            
CONECT   21   16   19   22                                                  
CONECT   22   21                                                            
CONECT   23   17   30                                                       
CONECT   24   30   31                                                       
CONECT   25   31   32                                                       
CONECT   26   30                                                            
CONECT   27   30                                                            
CONECT   28   31                                                            
CONECT   29   31                                                            
CONECT   30   23   24   26   27                                             
CONECT   31   24   25   28   29                                             
CONECT   32    4   25                                                       
CONECT   33    5   36                                                       
CONECT   34   36                                                            
CONECT   35   36                                                            
CONECT   36   33   34   35   37                                             
CONECT   37   36                                                            
CONECT   38    1   39   40                                                  
CONECT   39   38   41   42                                                  
CONECT   40   38   43                                                       
CONECT   41   39   44   43                                                  
CONECT   42   39   45                                                       
CONECT   43   40   41                                                       
CONECT   44   41   46   47                                                  
CONECT   45   42   46                                                       
CONECT   46   44   45                                                       
CONECT   47   44                                                            
CONECT   48    8   50                                                       
CONECT   49   50                                                            
CONECT   50   48   49   51                                                  
CONECT   51   50   53                                                       
CONECT   52   53                                                            
CONECT   53   51   52   54                                                  
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   67                                                       
CONECT   62   63   70                                                       
CONECT   63   62   64                                                       
CONECT   64   63   65                                                       
CONECT   65   64   66                                                       
CONECT   66   65   71                                                       
CONECT   67   61   68                                                       
CONECT   68   67   69                                                       
CONECT   69   68   70                                                       
CONECT   70   69   62                                                       
CONECT   71   66   72                                                       
CONECT   72   71                                                            
MASTER        0    0    0    0    0    0    0    0   72    0  148    0
END
Download

3D PDB for HMDB0060215 (3-Oxodocosanoyl-CoA)

COMPND    HMDB0060215
HETATM    1  C1  UNL     1       2.389  -3.277  -2.836  1.00  0.00           C  
HETATM    2  C2  UNL     1       1.210  -3.086  -1.905  1.00  0.00           C  
HETATM    3  C3  UNL     1       0.212  -4.213  -2.064  1.00  0.00           C  
HETATM    4  C4  UNL     1      -0.952  -3.964  -1.123  1.00  0.00           C  
HETATM    5  C5  UNL     1      -1.987  -5.075  -1.260  1.00  0.00           C  
HETATM    6  C6  UNL     1      -1.418  -6.430  -0.922  1.00  0.00           C  
HETATM    7  C7  UNL     1      -0.909  -6.513   0.506  1.00  0.00           C  
HETATM    8  C8  UNL     1      -0.333  -7.872   0.753  1.00  0.00           C  
HETATM    9  C9  UNL     1       0.168  -8.045   2.163  1.00  0.00           C  
HETATM   10  C10 UNL     1       1.217  -7.029   2.520  1.00  0.00           C  
HETATM   11  C11 UNL     1       1.714  -7.290   3.944  1.00  0.00           C  
HETATM   12  C12 UNL     1       2.727  -6.274   4.365  1.00  0.00           C  
HETATM   13  C13 UNL     1       3.931  -6.195   3.491  1.00  0.00           C  
HETATM   14  C14 UNL     1       4.878  -5.135   4.033  1.00  0.00           C  
HETATM   15  C15 UNL     1       6.071  -5.027   3.097  1.00  0.00           C  
HETATM   16  C16 UNL     1       7.059  -3.978   3.584  1.00  0.00           C  
HETATM   17  C17 UNL     1       8.159  -3.951   2.537  1.00  0.00           C  
HETATM   18  C18 UNL     1       9.234  -2.962   2.797  1.00  0.00           C  
HETATM   19  C19 UNL     1       8.853  -1.546   2.925  1.00  0.00           C  
HETATM   20  C20 UNL     1       8.219  -0.858   1.811  1.00  0.00           C  
HETATM   21  O1  UNL     1       7.651   0.219   2.131  1.00  0.00           O  
HETATM   22  C21 UNL     1       8.140  -1.213   0.401  1.00  0.00           C  
HETATM   23  C22 UNL     1       7.271  -0.204  -0.307  1.00  0.00           C  
HETATM   24  O2  UNL     1       7.785   0.717  -0.892  1.00  0.00           O  
HETATM   25  S1  UNL     1       5.496  -0.394  -0.262  1.00  0.00           S  
HETATM   26  C23 UNL     1       4.609   0.839  -1.211  1.00  0.00           C  
HETATM   27  C24 UNL     1       3.110   0.558  -0.987  1.00  0.00           C  
HETATM   28  N1  UNL     1       2.869   0.690   0.432  1.00  0.00           N  
HETATM   29  C25 UNL     1       1.597   0.488   1.028  1.00  0.00           C  
HETATM   30  O3  UNL     1       0.651   0.181   0.257  1.00  0.00           O  
HETATM   31  C26 UNL     1       1.440   0.640   2.497  1.00  0.00           C  
HETATM   32  C27 UNL     1       0.058   0.278   2.952  1.00  0.00           C  
HETATM   33  N2  UNL     1      -0.982   1.098   2.378  1.00  0.00           N  
HETATM   34  C28 UNL     1      -1.063   2.504   2.575  1.00  0.00           C  
HETATM   35  O4  UNL     1      -0.204   3.098   3.270  1.00  0.00           O  
HETATM   36  C29 UNL     1      -2.161   3.290   1.971  1.00  0.00           C  
HETATM   37  O5  UNL     1      -2.937   2.487   1.115  1.00  0.00           O  
HETATM   38  C30 UNL     1      -1.758   4.594   1.374  1.00  0.00           C  
HETATM   39  C31 UNL     1      -2.959   5.331   0.783  1.00  0.00           C  
HETATM   40  C32 UNL     1      -1.213   5.470   2.500  1.00  0.00           C  
HETATM   41  C33 UNL     1      -0.728   4.532   0.302  1.00  0.00           C  
HETATM   42  O6  UNL     1      -1.139   3.763  -0.814  1.00  0.00           O  
HETATM   43  P1  UNL     1       0.112   3.799  -1.980  1.00  0.00           P  
HETATM   44  O7  UNL     1      -0.242   4.930  -2.925  1.00  0.00           O  
HETATM   45  O8  UNL     1       1.560   4.245  -1.231  1.00  0.00           O  
HETATM   46  O9  UNL     1       0.228   2.339  -2.796  1.00  0.00           O  
HETATM   47  P2  UNL     1      -1.298   1.660  -2.987  1.00  0.00           P  
HETATM   48  O10 UNL     1      -1.461   1.157  -4.406  1.00  0.00           O  
HETATM   49  O11 UNL     1      -1.567   0.399  -1.890  1.00  0.00           O  
HETATM   50  O12 UNL     1      -2.478   2.843  -2.704  1.00  0.00           O  
HETATM   51  C34 UNL     1      -3.746   2.253  -2.610  1.00  0.00           C  
HETATM   52  C35 UNL     1      -4.766   3.361  -2.374  1.00  0.00           C  
HETATM   53  O13 UNL     1      -4.711   4.245  -3.434  1.00  0.00           O  
HETATM   54  C36 UNL     1      -6.011   4.684  -3.616  1.00  0.00           C  
HETATM   55  N3  UNL     1      -6.158   5.235  -4.959  1.00  0.00           N  
HETATM   56  C37 UNL     1      -7.091   6.100  -5.379  1.00  0.00           C  
HETATM   57  N4  UNL     1      -6.890   6.373  -6.700  1.00  0.00           N  
HETATM   58  C38 UNL     1      -5.817   5.672  -7.122  1.00  0.00           C  
HETATM   59  C39 UNL     1      -5.193   5.585  -8.352  1.00  0.00           C  
HETATM   60  N5  UNL     1      -5.638   6.305  -9.492  1.00  0.00           N  
HETATM   61  N6  UNL     1      -4.115   4.771  -8.435  1.00  0.00           N  
HETATM   62  C40 UNL     1      -3.681   4.084  -7.364  1.00  0.00           C  
HETATM   63  N7  UNL     1      -4.300   4.173  -6.154  1.00  0.00           N  
HETATM   64  C41 UNL     1      -5.375   4.969  -6.021  1.00  0.00           C  
HETATM   65  C42 UNL     1      -6.800   3.379  -3.525  1.00  0.00           C  
HETATM   66  O14 UNL     1      -8.150   3.588  -3.302  1.00  0.00           O  
HETATM   67  C43 UNL     1      -6.156   2.805  -2.261  1.00  0.00           C  
HETATM   68  O15 UNL     1      -6.788   3.430  -1.182  1.00  0.00           O  
HETATM   69  P3  UNL     1      -7.465   2.294  -0.133  1.00  0.00           P  
HETATM   70  O16 UNL     1      -8.626   1.642  -0.832  1.00  0.00           O  
HETATM   71  O17 UNL     1      -6.290   1.136   0.316  1.00  0.00           O  
HETATM   72  O18 UNL     1      -7.966   3.112   1.258  1.00  0.00           O  
HETATM   73  H1  UNL     1       3.003  -2.366  -2.835  1.00  0.00           H  
HETATM   74  H2  UNL     1       1.944  -3.479  -3.851  1.00  0.00           H  
HETATM   75  H3  UNL     1       2.945  -4.175  -2.530  1.00  0.00           H  
HETATM   76  H4  UNL     1       1.624  -3.143  -0.868  1.00  0.00           H  
HETATM   77  H5  UNL     1       0.740  -2.115  -2.139  1.00  0.00           H  
HETATM   78  H6  UNL     1       0.677  -5.189  -1.761  1.00  0.00           H  
HETATM   79  H7  UNL     1      -0.141  -4.317  -3.104  1.00  0.00           H  
HETATM   80  H8  UNL     1      -1.440  -3.032  -1.476  1.00  0.00           H  
HETATM   81  H9  UNL     1      -0.596  -3.844  -0.085  1.00  0.00           H  
HETATM   82  H10 UNL     1      -2.303  -5.118  -2.326  1.00  0.00           H  
HETATM   83  H11 UNL     1      -2.871  -4.857  -0.651  1.00  0.00           H  
HETATM   84  H12 UNL     1      -0.631  -6.717  -1.641  1.00  0.00           H  
HETATM   85  H13 UNL     1      -2.214  -7.215  -1.051  1.00  0.00           H  
HETATM   86  H14 UNL     1      -1.732  -6.294   1.201  1.00  0.00           H  
HETATM   87  H15 UNL     1      -0.101  -5.766   0.658  1.00  0.00           H  
HETATM   88  H16 UNL     1      -1.042  -8.693   0.474  1.00  0.00           H  
HETATM   89  H17 UNL     1       0.560  -8.009   0.083  1.00  0.00           H  
HETATM   90  H18 UNL     1      -0.648  -8.069   2.897  1.00  0.00           H  
HETATM   91  H19 UNL     1       0.638  -9.061   2.201  1.00  0.00           H  
HETATM   92  H20 UNL     1       0.733  -6.032   2.538  1.00  0.00           H  
HETATM   93  H21 UNL     1       2.056  -7.031   1.807  1.00  0.00           H  
HETATM   94  H22 UNL     1       2.131  -8.305   4.037  1.00  0.00           H  
HETATM   95  H23 UNL     1       0.827  -7.174   4.618  1.00  0.00           H  
HETATM   96  H24 UNL     1       2.257  -5.275   4.513  1.00  0.00           H  
HETATM   97  H25 UNL     1       3.072  -6.587   5.392  1.00  0.00           H  
HETATM   98  H26 UNL     1       4.477  -7.161   3.533  1.00  0.00           H  
HETATM   99  H27 UNL     1       3.686  -6.012   2.431  1.00  0.00           H  
HETATM  100  H28 UNL     1       4.373  -4.171   4.196  1.00  0.00           H  
HETATM  101  H29 UNL     1       5.232  -5.474   5.034  1.00  0.00           H  
HETATM  102  H30 UNL     1       5.639  -4.730   2.114  1.00  0.00           H  
HETATM  103  H31 UNL     1       6.570  -5.995   3.030  1.00  0.00           H  
HETATM  104  H32 UNL     1       6.520  -3.040   3.704  1.00  0.00           H  
HETATM  105  H33 UNL     1       7.500  -4.264   4.550  1.00  0.00           H  
HETATM  106  H34 UNL     1       8.661  -4.974   2.664  1.00  0.00           H  
HETATM  107  H35 UNL     1       7.679  -3.957   1.573  1.00  0.00           H  
HETATM  108  H36 UNL     1       9.721  -3.272   3.773  1.00  0.00           H  
HETATM  109  H37 UNL     1      10.050  -3.116   2.051  1.00  0.00           H  
HETATM  110  H38 UNL     1       9.815  -0.973   3.140  1.00  0.00           H  
HETATM  111  H39 UNL     1       8.264  -1.387   3.865  1.00  0.00           H  
HETATM  112  H40 UNL     1       9.187  -1.085  -0.024  1.00  0.00           H  
HETATM  113  H41 UNL     1       7.846  -2.226   0.140  1.00  0.00           H  
HETATM  114  H42 UNL     1       4.791   1.856  -0.869  1.00  0.00           H  
HETATM  115  H43 UNL     1       4.832   0.783  -2.311  1.00  0.00           H  
HETATM  116  H44 UNL     1       2.478   1.212  -1.601  1.00  0.00           H  
HETATM  117  H45 UNL     1       2.923  -0.500  -1.332  1.00  0.00           H  
HETATM  118  H46 UNL     1       3.661   0.949   1.064  1.00  0.00           H  
HETATM  119  H47 UNL     1       1.679   1.695   2.808  1.00  0.00           H  
HETATM  120  H48 UNL     1       2.142  -0.094   2.981  1.00  0.00           H  
HETATM  121  H49 UNL     1      -0.043   0.422   4.070  1.00  0.00           H  
HETATM  122  H50 UNL     1      -0.164  -0.794   2.801  1.00  0.00           H  
HETATM  123  H51 UNL     1      -1.719   0.628   1.783  1.00  0.00           H  
HETATM  124  H52 UNL     1      -2.883   3.481   2.841  1.00  0.00           H  
HETATM  125  H53 UNL     1      -3.877   2.784   1.093  1.00  0.00           H  
HETATM  126  H54 UNL     1      -2.882   6.387   1.097  1.00  0.00           H  
HETATM  127  H55 UNL     1      -3.916   4.938   1.157  1.00  0.00           H  
HETATM  128  H56 UNL     1      -2.912   5.352  -0.332  1.00  0.00           H  
HETATM  129  H57 UNL     1      -0.142   5.347   2.665  1.00  0.00           H  
HETATM  130  H58 UNL     1      -1.822   5.358   3.416  1.00  0.00           H  
HETATM  131  H59 UNL     1      -1.378   6.541   2.175  1.00  0.00           H  
HETATM  132  H60 UNL     1      -0.487   5.536  -0.102  1.00  0.00           H  
HETATM  133  H61 UNL     1       0.225   4.070   0.623  1.00  0.00           H  
HETATM  134  H62 UNL     1       2.025   3.454  -0.911  1.00  0.00           H  
HETATM  135  H63 UNL     1      -2.068   0.702  -1.093  1.00  0.00           H  
HETATM  136  H64 UNL     1      -3.792   1.570  -1.759  1.00  0.00           H  
HETATM  137  H65 UNL     1      -3.968   1.697  -3.535  1.00  0.00           H  
HETATM  138  H66 UNL     1      -4.474   3.926  -1.466  1.00  0.00           H  
HETATM  139  H67 UNL     1      -6.299   5.380  -2.828  1.00  0.00           H  
HETATM  140  H68 UNL     1      -7.882   6.515  -4.762  1.00  0.00           H  
HETATM  141  H69 UNL     1      -5.386   5.936 -10.435  1.00  0.00           H  
HETATM  142  H70 UNL     1      -6.200   7.182  -9.460  1.00  0.00           H  
HETATM  143  H71 UNL     1      -2.826   3.436  -7.419  1.00  0.00           H  
HETATM  144  H72 UNL     1      -6.583   2.766  -4.403  1.00  0.00           H  
HETATM  145  H73 UNL     1      -8.261   3.928  -2.379  1.00  0.00           H  
HETATM  146  H74 UNL     1      -6.211   1.717  -2.215  1.00  0.00           H  
HETATM  147  H75 UNL     1      -6.247   1.050   1.303  1.00  0.00           H  
HETATM  148  H76 UNL     1      -7.307   3.058   1.979  1.00  0.00           H  
CONECT    1    2   73   74   75
CONECT    2    3   76   77
CONECT    3    4   78   79
CONECT    4    5   80   81
CONECT    5    6   82   83
CONECT    6    7   84   85
CONECT    7    8   86   87
CONECT    8    9   88   89
CONECT    9   10   90   91
CONECT   10   11   92   93
CONECT   11   12   94   95
CONECT   12   13   96   97
CONECT   13   14   98   99
CONECT   14   15  100  101
CONECT   15   16  102  103
CONECT   16   17  104  105
CONECT   17   18  106  107
CONECT   18   19  108  109
CONECT   19   20  110  111
CONECT   20   21   21   22
CONECT   22   23  112  113
CONECT   23   24   24   25
CONECT   25   26
CONECT   26   27  114  115
CONECT   27   28  116  117
CONECT   28   29  118
CONECT   29   30   30   31
CONECT   31   32  119  120
CONECT   32   33  121  122
CONECT   33   34  123
CONECT   34   35   35   36
CONECT   36   37   38  124
CONECT   37  125
CONECT   38   39   40   41
CONECT   39  126  127  128
CONECT   40  129  130  131
CONECT   41   42  132  133
CONECT   42   43
CONECT   43   44   44   45   46
CONECT   45  134
CONECT   46   47
CONECT   47   48   48   49   50
CONECT   49  135
CONECT   50   51
CONECT   51   52  136  137
CONECT   52   53   67  138
CONECT   53   54
CONECT   54   55   65  139
CONECT   55   56   64
CONECT   56   57   57  140
CONECT   57   58
CONECT   58   59   59   64
CONECT   59   60   61
CONECT   60  141  142
CONECT   61   62   62
CONECT   62   63  143
CONECT   63   64   64
CONECT   65   66   67  144
CONECT   66  145
CONECT   67   68  146
CONECT   68   69
CONECT   69   70   70   71   72
CONECT   71  147
CONECT   72  148
END
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SMILES for HMDB0060215 (3-Oxodocosanoyl-CoA)

CCCCCCCCCCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N
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INCHI for HMDB0060215 (3-Oxodocosanoyl-CoA)

InChI=1S/C43H76N7O18P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-31(51)26-34(53)72-25-24-45-33(52)22-23-46-41(56)38(55)43(2,3)28-65-71(62,63)68-70(60,61)64-27-32-37(67-69(57,58)59)36(54)42(66-32)50-30-49-35-39(44)47-29-48-40(35)50/h29-30,32,36-38,42,54-55H,4-28H2,1-3H3,(H,45,52)(H,46,56)(H,60,61)(H,62,63)(H2,44,47,48)(H2,57,58,59)/t32-,36-,37-,38+,42-/m1/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
3-Keto-C22-CoAChEBI
3-Ketobehenoyl-CoAChEBI
3-Ketodocosanoyl-CoAChEBI
3-Ketodocosanoyl-coenzyme AChEBI
3-Oxobehenoyl-CoAChEBI
3-Oxobehenoyl-coenzyme AChEBI
3-Oxodocosanoyl-coenzyme AChEBI
Chemical FormulaC43H76N7O18P3S
Average Molecular Weight1104.086
Monoisotopic Molecular Weight1103.418038889
IUPAC Name{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-2,2-dimethyl-3-{[2-({2-[(3-oxodocosanoyl)sulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}propoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid
Traditional Name3-keto-C22-coa
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N
InChI Identifier
InChI=1S/C43H76N7O18P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-31(51)26-34(53)72-25-24-45-33(52)22-23-46-41(56)38(55)43(2,3)28-65-71(62,63)68-70(60,61)64-27-32-37(67-69(57,58)59)36(54)42(66-32)50-30-49-35-39(44)47-29-48-40(35)50/h29-30,32,36-38,42,54-55H,4-28H2,1-3H3,(H,45,52)(H,46,56)(H,60,61)(H,62,63)(H2,44,47,48)(H2,57,58,59)/t32-,36-,37-,38+,42-/m1/s1
InChI KeyRKCOGGUHKPTOQJ-GNSUAQHMSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as very-long-chain 3-oxoacyl coas. These are organic compounds containing a coenzyme A derivative, which is 3-oxo acylated long aliphatic chain of 22 carbon atoms or more.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acyl thioesters
Direct ParentVery-long-chain 3-oxoacyl CoAs
Alternative Parents
Substituents
  • Coenzyme a or derivatives
  • Purine ribonucleoside 3',5'-bisphosphate
  • Purine ribonucleoside bisphosphate
  • Purine ribonucleoside diphosphate
  • Ribonucleoside 3'-phosphate
  • Pentose phosphate
  • Pentose-5-phosphate
  • Beta amino acid or derivatives
  • Glycosyl compound
  • N-glycosyl compound
  • 6-aminopurine
  • Monosaccharide phosphate
  • Organic pyrophosphate
  • Pentose monosaccharide
  • Imidazopyrimidine
  • Purine
  • Monoalkyl phosphate
  • Aminopyrimidine
  • 1,3-dicarbonyl compound
  • Imidolactam
  • Monosaccharide
  • N-acyl-amine
  • N-substituted imidazole
  • Organic phosphoric acid derivative
  • Pyrimidine
  • Alkyl phosphate
  • Fatty amide
  • Phosphoric acid ester
  • Tetrahydrofuran
  • Imidazole
  • Azole
  • Heteroaromatic compound
  • Carbothioic s-ester
  • Secondary alcohol
  • Ketone
  • Thiocarboxylic acid ester
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Amino acid or derivatives
  • Sulfenyl compound
  • Thiocarboxylic acid or derivatives
  • Organoheterocyclic compound
  • Azacycle
  • Oxacycle
  • Carboxylic acid derivative
  • Organosulfur compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic nitrogen compound
  • Primary amine
  • Organopnictogen compound
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.17 g/LALOGPS
logP3.43ALOGPS
logP2.6ChemAxon
logS-3.4ALOGPS
pKa (Strongest Acidic)0.82ChemAxon
pKa (Strongest Basic)4.01ChemAxon
Physiological Charge-4ChemAxon
Hydrogen Acceptor Count18ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area380.7 ŲChemAxon
Rotatable Bond Count40ChemAxon
Refractivity264.95 m³·mol⁻¹ChemAxon
Polarizability113.67 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+295.79730932474
DeepCCS[M-H]-294.07330932474
DeepCCS[M-2H]-328.90630932474
DeepCCS[M+Na]+303.21430932474
AllCCS[M+H]+311.932859911
AllCCS[M+H-H2O]+312.532859911
AllCCS[M+NH4]+311.432859911
AllCCS[M+Na]+311.332859911
AllCCS[M-H]-299.632859911
AllCCS[M+Na-2H]-305.132859911
AllCCS[M+HCOO]-311.132859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.7.15 minutes32390414
Predicted by Siyang on May 30, 202215.8545 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20223.91 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid3529.1 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid103.6 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid248.9 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid159.2 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid295.0 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid655.9 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid815.7 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)940.0 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1275.1 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid802.6 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1197.1 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid460.5 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid462.5 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate156.7 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA29.7 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water25.2 seconds40023050

Predicted Kovats Retention Indices

Not Available
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
MSMass Spectrum (Electron Ionization)Not Available2022-08-06Not AvailableView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Oxodocosanoyl-CoA 10V, Positive-QTOFsplash10-000i-4901810200-04d1a1764224605f35f52016-09-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Oxodocosanoyl-CoA 20V, Positive-QTOFsplash10-01p9-1911820000-2ad808781edf76eda7002016-09-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Oxodocosanoyl-CoA 40V, Positive-QTOFsplash10-000i-1900400000-ebefcbce21561bafb2d52016-09-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Oxodocosanoyl-CoA 10V, Negative-QTOFsplash10-053r-6906141400-d62e410881aa05cbd42d2016-09-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Oxodocosanoyl-CoA 20V, Negative-QTOFsplash10-001i-5911210100-578bcad406850cb9ca002016-09-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Oxodocosanoyl-CoA 40V, Negative-QTOFsplash10-056r-8900100000-369f5484d0e99c4774612016-09-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Oxodocosanoyl-CoA 10V, Positive-QTOFsplash10-0udr-7900000000-0c3af4c03ff0a50af1922021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Oxodocosanoyl-CoA 20V, Positive-QTOFsplash10-000i-9711100133-d8aa47d5a7471640eaa12021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Oxodocosanoyl-CoA 40V, Positive-QTOFsplash10-0002-0000290000-0e1000d24e0816d1f08a2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Oxodocosanoyl-CoA 10V, Negative-QTOFsplash10-0udi-2900000000-f8bae714e689b815da822021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Oxodocosanoyl-CoA 20V, Negative-QTOFsplash10-0ufr-8900302340-3d0fe82401dd936986a52021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Oxodocosanoyl-CoA 40V, Negative-QTOFsplash10-00pi-9201301300-3de85a9cca17abf032e22021-10-12Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-21Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane (predicted from logP)
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID21866049
KEGG Compound IDNot Available
BioCyc IDCPD-10283
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound25229584
PDB IDNot Available
ChEBI ID52328
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, Haraldsdottir H, Mo ML, Rolfsson O, Stobbe MD, Thorleifsson SG, Agren R, Bolling C, Bordel S, Chavali AK, Dobson P, Dunn WB, Endler L, Hala D, Hucka M, Hull D, Jameson D, Jamshidi N, Jonsson JJ, Juty N, Keating S, Nookaew I, Le Novere N, Malys N, Mazein A, Papin JA, Price ND, Selkov E Sr, Sigurdsson MI, Simeonidis E, Sonnenschein N, Smallbone K, Sorokin A, van Beek JH, Weichart D, Goryanin I, Nielsen J, Westerhoff HV, Kell DB, Mendes P, Palsson BO: A community-driven global reconstruction of human metabolism. Nat Biotechnol. 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3. [PubMed:23455439 ]
  2. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  3. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  4. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  5. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.