Record Information |
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Version | 5.0 |
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Status | Expected but not Quantified |
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Creation Date | 2017-03-16 03:42:10 UTC |
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Update Date | 2022-03-07 03:17:52 UTC |
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HMDB ID | HMDB0062298 |
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Secondary Accession Numbers | |
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Metabolite Identification |
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Common Name | 15-deoxy-PGD2 |
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Description | 15-deoxy-PGD2 is classified as a member of the Prostaglandins and related compounds. Prostaglandins and related compounds are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. 15-deoxy-PGD2 is considered to be practically insoluble (in water) and acidic. 15-deoxy-PGD2 is an eicosanoid lipid molecule |
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Structure | [H]\C(CCCC(O)=O)=C(/[H])C[C@]1([H])\C(=C(\[H])/C(/[H])=C(\[H])CCCCC)C(=O)C[C@]1([H])O InChI=1S/C20H30O4/c1-2-3-4-5-6-9-12-16-17(19(22)15-18(16)21)13-10-7-8-11-14-20(23)24/h6-7,9-10,12,17,19,22H,2-5,8,11,13-15H2,1H3,(H,23,24)/b9-6+,10-7-,16-12+/t17-,19+/m1/s1 |
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Synonyms | Value | Source |
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15-Deoxy-δ-12,14-PGD2 | Generator |
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Chemical Formula | C20H30O4 |
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Average Molecular Weight | 334.456 |
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Monoisotopic Molecular Weight | 334.214409446 |
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IUPAC Name | (5Z)-7-[(1R,2E,5S)-5-hydroxy-2-[(2E)-oct-2-en-1-ylidene]-3-oxocyclopentyl]hept-5-enoic acid |
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Traditional Name | 15-deoxy-delta-12,14-PGD2 |
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CAS Registry Number | Not Available |
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SMILES | [H]\C(CCCC(O)=O)=C(/[H])C[C@]1([H])\C(=C(\[H])/C(/[H])=C(\[H])CCCCC)C(=O)C[C@]1([H])O |
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InChI Identifier | InChI=1S/C20H30O4/c1-2-3-4-5-6-9-12-16-17(19(22)15-18(16)21)13-10-7-8-11-14-20(23)24/h6-7,9-10,12,17,19,22H,2-5,8,11,13-15H2,1H3,(H,23,24)/b9-6+,10-7-,16-12+/t17-,19+/m1/s1 |
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InChI Key | QUGBPWLPAUHDTI-PLGLXCLHSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. |
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Kingdom | Organic compounds |
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Super Class | Lipids and lipid-like molecules |
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Class | Fatty Acyls |
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Sub Class | Eicosanoids |
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Direct Parent | Prostaglandins and related compounds |
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Alternative Parents | |
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Substituents | - Prostaglandin skeleton
- Long-chain fatty acid
- Hydroxy fatty acid
- Cyclopentanol
- Fatty acid
- Unsaturated fatty acid
- Cyclic alcohol
- Ketone
- Cyclic ketone
- Secondary alcohol
- Carboxylic acid
- Carboxylic acid derivative
- Monocarboxylic acid or derivatives
- Alcohol
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Organooxygen compound
- Carbonyl group
- Aliphatic homomonocyclic compound
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Molecular Framework | Aliphatic homomonocyclic compounds |
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External Descriptors | |
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Ontology |
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Physiological effect | Not Available |
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Disposition | Not Available |
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Process | Not Available |
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Role | Not Available |
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Physical Properties |
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State | Not Available |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | 0.026 g/l | ALOGPS | LogP | 4.34 | ALOGPS |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | |
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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15-deoxy-PGD2,1TMS,isomer #1 | CCCCC/C=C/C=C1/C(=O)C[C@H](O)[C@@H]1C/C=C\CCCC(=O)O[Si](C)(C)C | 2825.5 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,1TMS,isomer #2 | CCCCC/C=C/C=C1/C(=O)C[C@H](O[Si](C)(C)C)[C@@H]1C/C=C\CCCC(=O)O | 2787.6 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,1TMS,isomer #3 | CCCCC/C=C/C=C1/C(O[Si](C)(C)C)=C[C@H](O)[C@@H]1C/C=C\CCCC(=O)O | 2839.4 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,2TMS,isomer #1 | CCCCC/C=C/C=C1/C(=O)C[C@H](O[Si](C)(C)C)[C@@H]1C/C=C\CCCC(=O)O[Si](C)(C)C | 2761.0 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,2TMS,isomer #2 | CCCCC/C=C/C=C1/C(O[Si](C)(C)C)=C[C@H](O)[C@@H]1C/C=C\CCCC(=O)O[Si](C)(C)C | 2794.9 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,2TMS,isomer #3 | CCCCC/C=C/C=C1/C(O[Si](C)(C)C)=C[C@H](O[Si](C)(C)C)[C@@H]1C/C=C\CCCC(=O)O | 2837.7 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,3TMS,isomer #1 | CCCCC/C=C/C=C1/C(O[Si](C)(C)C)=C[C@H](O[Si](C)(C)C)[C@@H]1C/C=C\CCCC(=O)O[Si](C)(C)C | 2803.2 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,3TMS,isomer #1 | CCCCC/C=C/C=C1/C(O[Si](C)(C)C)=C[C@H](O[Si](C)(C)C)[C@@H]1C/C=C\CCCC(=O)O[Si](C)(C)C | 2719.2 | Standard non polar | 33892256 | 15-deoxy-PGD2,3TMS,isomer #1 | CCCCC/C=C/C=C1/C(O[Si](C)(C)C)=C[C@H](O[Si](C)(C)C)[C@@H]1C/C=C\CCCC(=O)O[Si](C)(C)C | 2946.4 | Standard polar | 33892256 | 15-deoxy-PGD2,1TBDMS,isomer #1 | CCCCC/C=C/C=C1/C(=O)C[C@H](O)[C@@H]1C/C=C\CCCC(=O)O[Si](C)(C)C(C)(C)C | 3055.3 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,1TBDMS,isomer #2 | CCCCC/C=C/C=C1/C(=O)C[C@H](O[Si](C)(C)C(C)(C)C)[C@@H]1C/C=C\CCCC(=O)O | 3004.2 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,1TBDMS,isomer #3 | CCCCC/C=C/C=C1/C(O[Si](C)(C)C(C)(C)C)=C[C@H](O)[C@@H]1C/C=C\CCCC(=O)O | 3063.3 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,2TBDMS,isomer #1 | CCCCC/C=C/C=C1/C(=O)C[C@H](O[Si](C)(C)C(C)(C)C)[C@@H]1C/C=C\CCCC(=O)O[Si](C)(C)C(C)(C)C | 3231.9 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,2TBDMS,isomer #2 | CCCCC/C=C/C=C1/C(O[Si](C)(C)C(C)(C)C)=C[C@H](O)[C@@H]1C/C=C\CCCC(=O)O[Si](C)(C)C(C)(C)C | 3277.5 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,2TBDMS,isomer #3 | CCCCC/C=C/C=C1/C(O[Si](C)(C)C(C)(C)C)=C[C@H](O[Si](C)(C)C(C)(C)C)[C@@H]1C/C=C\CCCC(=O)O | 3298.0 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,3TBDMS,isomer #1 | CCCCC/C=C/C=C1/C(O[Si](C)(C)C(C)(C)C)=C[C@H](O[Si](C)(C)C(C)(C)C)[C@@H]1C/C=C\CCCC(=O)O[Si](C)(C)C(C)(C)C | 3509.5 | Semi standard non polar | 33892256 | 15-deoxy-PGD2,3TBDMS,isomer #1 | CCCCC/C=C/C=C1/C(O[Si](C)(C)C(C)(C)C)=C[C@H](O[Si](C)(C)C(C)(C)C)[C@@H]1C/C=C\CCCC(=O)O[Si](C)(C)C(C)(C)C | 3180.4 | Standard non polar | 33892256 | 15-deoxy-PGD2,3TBDMS,isomer #1 | CCCCC/C=C/C=C1/C(O[Si](C)(C)C(C)(C)C)=C[C@H](O[Si](C)(C)C(C)(C)C)[C@@H]1C/C=C\CCCC(=O)O[Si](C)(C)C(C)(C)C | 3119.2 | Standard polar | 33892256 |
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| GC-MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted GC-MS | Predicted GC-MS Spectrum - 15-deoxy-PGD2 GC-MS (Non-derivatized) - 70eV, Positive | splash10-014l-5392000000-4b6d6783c35d21aa4119 | 2017-09-20 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 15-deoxy-PGD2 GC-MS (2 TMS) - 70eV, Positive | splash10-020r-9215500000-448c1d365df3538f4f2e | 2017-10-06 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 15-deoxy-PGD2 GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 15-deoxy-PGD2 10V, Positive-QTOF | splash10-014j-0169000000-5b00b6cbc44313cdba8d | 2017-10-06 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 15-deoxy-PGD2 20V, Positive-QTOF | splash10-0avs-2292000000-340f34894155eb581e4c | 2017-10-06 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 15-deoxy-PGD2 40V, Positive-QTOF | splash10-014l-9200000000-f22e3057dec8bacd839d | 2017-10-06 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 15-deoxy-PGD2 10V, Negative-QTOF | splash10-001i-0019000000-97f54b4757fa318089eb | 2017-10-06 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 15-deoxy-PGD2 20V, Negative-QTOF | splash10-0159-1189000000-b133b2e2c83df300f262 | 2017-10-06 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 15-deoxy-PGD2 40V, Negative-QTOF | splash10-0a4i-9530000000-6c2dca65789786c482f2 | 2017-10-06 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 15-deoxy-PGD2 10V, Positive-QTOF | splash10-014s-1189000000-f3e8af4a0b533d3cf42e | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 15-deoxy-PGD2 20V, Positive-QTOF | splash10-0kwe-5491000000-c90457972951001b4f5b | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 15-deoxy-PGD2 40V, Positive-QTOF | splash10-069u-9200000000-958da6ddee9f2f0db508 | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 15-deoxy-PGD2 10V, Negative-QTOF | splash10-00lr-0009000000-32e689b3c409c1aa30f6 | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 15-deoxy-PGD2 20V, Negative-QTOF | splash10-001i-1197000000-f6bb24aed82db67345c0 | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 15-deoxy-PGD2 40V, Negative-QTOF | splash10-02td-9362000000-10d999e1a59eb408c19d | 2021-09-24 | Wishart Lab | View Spectrum |
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