Record Information |
---|
Version | 5.0 |
---|
Status | Expected but not Quantified |
---|
Creation Date | 2017-03-23 04:39:03 UTC |
---|
Update Date | 2022-03-07 03:17:57 UTC |
---|
HMDB ID | HMDB0062607 |
---|
Secondary Accession Numbers | |
---|
Metabolite Identification |
---|
Common Name | (25R)-4beta,26-dihydroxycholesterol |
---|
Description | (25R)-4beta,26-dihydroxycholesterol, also known as (3b,4b,25R)-cholest-5-ene-3,4,26-triol, belongs to the class of organic compounds known as trihydroxy bile acids, alcohols and derivatives. These are prenol lipids structurally characterized by a bile acid or alcohol which bears three hydroxyl groups (25R)-4beta,26-dihydroxycholesterol is an extremely weak basic (essentially neutral) compound (based on its pKa). |
---|
Structure | [H][C@](C)(CO)CCC[C@@]([H])(C)[C@@]1([H])CC[C@@]2([H])[C@]3([H])CC=C4[C@@]([H])(O)[C@@]([H])(O)CC[C@]4(C)[C@@]3([H])CC[C@]12C InChI=1S/C27H46O3/c1-17(16-28)6-5-7-18(2)20-10-11-21-19-8-9-23-25(30)24(29)13-15-27(23,4)22(19)12-14-26(20,21)3/h9,17-22,24-25,28-30H,5-8,10-16H2,1-4H3/t17-,18-,19+,20-,21+,22+,24+,25-,26-,27-/m1/s1 |
---|
Synonyms | Value | Source |
---|
(3beta,4beta,25R)-Cholest-5-ene-3,4,26-triol | ChEBI | (3b,4b,25R)-Cholest-5-ene-3,4,26-triol | Generator | (3Β,4β,25R)-cholest-5-ene-3,4,26-triol | Generator | (25R)-4b,26-Dihydroxycholesterol | Generator | (25R)-4Β,26-dihydroxycholesterol | Generator |
|
---|
Chemical Formula | C27H46O3 |
---|
Average Molecular Weight | 418.662 |
---|
Monoisotopic Molecular Weight | 418.344695341 |
---|
IUPAC Name | (1S,2R,5S,6R,10S,11S,14R,15R)-14-[(2R,6R)-7-hydroxy-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-ene-5,6-diol |
---|
Traditional Name | (1S,2R,5S,6R,10S,11S,14R,15R)-14-[(2R,6R)-7-hydroxy-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-ene-5,6-diol |
---|
CAS Registry Number | Not Available |
---|
SMILES | [H][C@](C)(CO)CCC[C@@]([H])(C)[C@@]1([H])CC[C@@]2([H])[C@]3([H])CC=C4[C@@]([H])(O)[C@@]([H])(O)CC[C@]4(C)[C@@]3([H])CC[C@]12C |
---|
InChI Identifier | InChI=1S/C27H46O3/c1-17(16-28)6-5-7-18(2)20-10-11-21-19-8-9-23-25(30)24(29)13-15-27(23,4)22(19)12-14-26(20,21)3/h9,17-22,24-25,28-30H,5-8,10-16H2,1-4H3/t17-,18-,19+,20-,21+,22+,24+,25-,26-,27-/m1/s1 |
---|
InChI Key | IDLRVFXWSUWMHI-KUYJPBLDSA-N |
---|
Chemical Taxonomy |
---|
Description | Belongs to the class of organic compounds known as trihydroxy bile acids, alcohols and derivatives. These are prenol lipids structurally characterized by a bile acid or alcohol which bears three hydroxyl groups. |
---|
Kingdom | Organic compounds |
---|
Super Class | Lipids and lipid-like molecules |
---|
Class | Steroids and steroid derivatives |
---|
Sub Class | Bile acids, alcohols and derivatives |
---|
Direct Parent | Trihydroxy bile acids, alcohols and derivatives |
---|
Alternative Parents | |
---|
Substituents | - 26-hydroxysteroid
- Trihydroxy bile acid, alcohol, or derivatives
- 3-hydroxy-delta-5-steroid
- 3-hydroxysteroid
- 4-hydroxysteroid
- Hydroxysteroid
- 3-beta-hydroxy-delta-5-steroid
- 3-beta-hydroxysteroid
- Delta-5-steroid
- Fatty alcohol
- Fatty acyl
- Cyclic alcohol
- Secondary alcohol
- Organooxygen compound
- Organic oxygen compound
- Alcohol
- Primary alcohol
- Hydrocarbon derivative
- Aliphatic homopolycyclic compound
|
---|
Molecular Framework | Aliphatic homopolycyclic compounds |
---|
External Descriptors | |
---|
Ontology |
---|
Physiological effect | Not Available |
---|
Disposition | |
---|
Process | Not Available |
---|
Role | Not Available |
---|
Physical Properties |
---|
State | Not Available |
---|
Experimental Molecular Properties | Property | Value | Reference |
---|
Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | 0.0032 g/l | ALOGPS | LogP | 5.28 | ALOGPS |
|
---|
Experimental Chromatographic Properties | Not Available |
---|
Predicted Molecular Properties | | Show more...
---|
Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
---|
(25R)-4beta,26-dihydroxycholesterol,1TMS,isomer #1 | C[C@H](CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O)[C@@H](O)CC[C@]4(C)[C@H]3CC[C@@]21C)CO[Si](C)(C)C | 3571.8 | Semi standard non polar | 33892256 | (25R)-4beta,26-dihydroxycholesterol,1TMS,isomer #2 | C[C@@H](CO)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O[Si](C)(C)C)[C@@H](O)CC[C@]4(C)[C@H]3CC[C@@]21C | 3484.5 | Semi standard non polar | 33892256 | (25R)-4beta,26-dihydroxycholesterol,1TMS,isomer #3 | C[C@@H](CO)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O)[C@@H](O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@@]21C | 3519.9 | Semi standard non polar | 33892256 | (25R)-4beta,26-dihydroxycholesterol,2TMS,isomer #1 | C[C@H](CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O[Si](C)(C)C)[C@@H](O)CC[C@]4(C)[C@H]3CC[C@@]21C)CO[Si](C)(C)C | 3485.3 | Semi standard non polar | 33892256 | (25R)-4beta,26-dihydroxycholesterol,2TMS,isomer #2 | C[C@H](CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O)[C@@H](O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@@]21C)CO[Si](C)(C)C | 3528.7 | Semi standard non polar | 33892256 | (25R)-4beta,26-dihydroxycholesterol,2TMS,isomer #3 | C[C@@H](CO)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@@]21C | 3430.5 | Semi standard non polar | 33892256 | (25R)-4beta,26-dihydroxycholesterol,3TMS,isomer #1 | C[C@H](CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@@]21C)CO[Si](C)(C)C | 3452.3 | Semi standard non polar | 33892256 | (25R)-4beta,26-dihydroxycholesterol,1TBDMS,isomer #1 | C[C@H](CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O)[C@@H](O)CC[C@]4(C)[C@H]3CC[C@@]21C)CO[Si](C)(C)C(C)(C)C | 3829.8 | Semi standard non polar | 33892256 | (25R)-4beta,26-dihydroxycholesterol,1TBDMS,isomer #2 | C[C@@H](CO)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H](O)CC[C@]4(C)[C@H]3CC[C@@]21C | 3726.4 | Semi standard non polar | 33892256 | (25R)-4beta,26-dihydroxycholesterol,1TBDMS,isomer #3 | C[C@@H](CO)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O)[C@@H](O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@@]21C | 3741.2 | Semi standard non polar | 33892256 | (25R)-4beta,26-dihydroxycholesterol,2TBDMS,isomer #1 | C[C@H](CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H](O)CC[C@]4(C)[C@H]3CC[C@@]21C)CO[Si](C)(C)C(C)(C)C | 3976.4 | Semi standard non polar | 33892256 | (25R)-4beta,26-dihydroxycholesterol,2TBDMS,isomer #2 | C[C@H](CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O)[C@@H](O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@@]21C)CO[Si](C)(C)C(C)(C)C | 4000.2 | Semi standard non polar | 33892256 | (25R)-4beta,26-dihydroxycholesterol,2TBDMS,isomer #3 | C[C@@H](CO)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H](O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@@]21C | 3868.0 | Semi standard non polar | 33892256 | (25R)-4beta,26-dihydroxycholesterol,3TBDMS,isomer #1 | C[C@H](CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H](O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@@]21C)CO[Si](C)(C)C(C)(C)C | 4109.0 | Semi standard non polar | 33892256 |
| Show more...
---|
Spectra |
---|
| GC-MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
---|
Predicted GC-MS | Predicted GC-MS Spectrum - (25R)-4beta,26-dihydroxycholesterol GC-MS (Non-derivatized) - 70eV, Positive | splash10-0k9i-0009200000-d93e1c414854aa50ceb0 | 2017-09-20 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - (25R)-4beta,26-dihydroxycholesterol GC-MS (3 TMS) - 70eV, Positive | splash10-00xr-1200149000-54e7c684d5212de10020 | 2017-10-06 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - (25R)-4beta,26-dihydroxycholesterol GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
---|
Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (25R)-4beta,26-dihydroxycholesterol 10V, Positive-QTOF | splash10-0uxr-0003900000-880dde1d8f940fa8a49c | 2017-10-06 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (25R)-4beta,26-dihydroxycholesterol 20V, Positive-QTOF | splash10-0ue9-2109400000-35e10c2e3d6c33f417ea | 2017-10-06 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (25R)-4beta,26-dihydroxycholesterol 40V, Positive-QTOF | splash10-066r-4229100000-fed098f417df535abe72 | 2017-10-06 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (25R)-4beta,26-dihydroxycholesterol 10V, Negative-QTOF | splash10-014i-0003900000-d06172d5c6dcfa8ed568 | 2017-10-06 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (25R)-4beta,26-dihydroxycholesterol 20V, Negative-QTOF | splash10-014j-0009700000-98f1250d298969498297 | 2017-10-06 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (25R)-4beta,26-dihydroxycholesterol 40V, Negative-QTOF | splash10-05g0-2009100000-452630452c3b7991905a | 2017-10-06 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (25R)-4beta,26-dihydroxycholesterol 10V, Positive-QTOF | splash10-0gc0-1004900000-6926c7d49d034235f86f | 2021-09-22 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (25R)-4beta,26-dihydroxycholesterol 20V, Positive-QTOF | splash10-001i-9237300000-428551f4a4c2435f43a7 | 2021-09-22 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (25R)-4beta,26-dihydroxycholesterol 40V, Positive-QTOF | splash10-0a6r-9630000000-8ae927dd6843bcc0eb66 | 2021-09-22 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (25R)-4beta,26-dihydroxycholesterol 10V, Negative-QTOF | splash10-014i-0001900000-16e558fdd81b58b0dee8 | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (25R)-4beta,26-dihydroxycholesterol 20V, Negative-QTOF | splash10-014i-0004900000-05c63be805106eccc9c8 | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (25R)-4beta,26-dihydroxycholesterol 40V, Negative-QTOF | splash10-014i-0001900000-d8eadcf03e567a7a3db5 | 2021-09-23 | Wishart Lab | View Spectrum |
| Show more...
---|
Biological Properties |
---|
Cellular Locations | Not Available |
---|
Biospecimen Locations | Not Available |
---|
Tissue Locations | Not Available |
---|
Pathways | |
---|
Normal Concentrations |
---|
| Not Available |
---|
Abnormal Concentrations |
---|
| Not Available |
---|
Associated Disorders and Diseases |
---|
Disease References | None |
---|
Associated OMIM IDs | None |
---|
External Links |
---|
DrugBank ID | Not Available |
---|
Phenol Explorer Compound ID | Not Available |
---|
FooDB ID | Not Available |
---|
KNApSAcK ID | Not Available |
---|
Chemspider ID | Not Available |
---|
KEGG Compound ID | Not Available |
---|
BioCyc ID | Not Available |
---|
BiGG ID | Not Available |
---|
Wikipedia Link | Not Available |
---|
METLIN ID | Not Available |
---|
PubChem Compound | 91825745 |
---|
PDB ID | Not Available |
---|
ChEBI ID | 86113 |
---|
Food Biomarker Ontology | Not Available |
---|
VMH ID | Not Available |
---|
MarkerDB ID | Not Available |
---|
Good Scents ID | Not Available |
---|
References |
---|
Synthesis Reference | Not Available |
---|
Material Safety Data Sheet (MSDS) | Not Available |
---|
General References | - Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
- Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
- Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
- Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
- Bodin K, Andersson U, Rystedt E, Ellis E, Norlin M, Pikuleva I, Eggertsen G, Bjorkhem I, Diczfalusy U: Metabolism of 4 beta -hydroxycholesterol in humans. J Biol Chem. 2002 Aug 30;277(35):31534-40. Epub 2002 Jun 20. [PubMed:12077124 ]
- Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.
|
---|