Hmdb loader
Identification
HMDB Protein ID HMDBP07820
Secondary Accession Numbers
  • 13529
Name Cadherin-related family member 5
Synonyms
  1. Mu-protocadherin
  2. Mucin and cadherin-like protein
Gene Name CDHR5
Protein Type Unknown
Biological Properties
General Function Involved in calcium ion binding
Specific Function Acts as a calcium-dependent cell adhesion protein
Pathways Not Available
Reactions Not Available
GO Classification
Component
membrane
cell part
plasma membrane
Function
ion binding
cation binding
metal ion binding
binding
calcium ion binding
Process
cell adhesion
cellular process
cell-cell adhesion
homophilic cell adhesion
Cellular Location
  1. Cell membrane
  2. Single-pass type I membrane protein (Potential)
Gene Properties
Chromosome Location Chromosome:1
Locus 11p15.5
SNPs CDHR5
Gene Sequence
>2538 bp
ATGGGGTCTTGGGCCCTGCTGTGGCCTCCCCTGCTGTTCACCGGGCTGCTCGTCCGACCC
CCGGGGACCATGGCCCAGGCCCAGTACTGCTCTGTGAACAAGGACATCTTTGAAGTAGAG
GAGAACACAAATGTCACCGAGCCGCTGGTGGACATCCACGTCCCGGAGGGCCAGGAGGTG
ACCCTCGGAGCCTTGTCCACCCCCTTTGCATTTCGGATCCAGGGAAACCAGCTGTTTCTC
AACGTGACTCCTGATTACGAGGAGAAGTCACTGCTTGAGGCTCAGCTGCTGTGTCAGAGC
GGAGGCACATTGGTGACCCAGCTAAGGGTGTTCGTGTCAGTGCTGGACGTCAATGACAAT
GCCCCCGAATTCCCCTTTAAGACCAAGGAGATAAGGGTGGAGGAGGACACGAAAGTGAAC
TCCACCGTCATCCCTGAGACGCAACTGCAGGCTGAGGACCGCGACAAGGACGACATTCTG
TTCTACACCCTCCCGGAAATGACAGCAGGTGCCAGTGACTACTTCTCCCTGGTGAGTGTA
AACCGTCCCGCCCTGAGGCTGGACCGGCCCCTGGACTTCTACGAGCGGCCGAACATGACC
TTCTGGCTGCTGGTGCGGGACACTCCGGGGGAGAATGTGGAACCCAGCCACACTGCCACC
GCCACACTAGTGCTGAACGTGGTGCCCGCCGACCTGCGGCCCCCGTGGTTCCTGCCCTGC
ACCTTCTCAGATGGCTACGTCTGCATTCAAGCTCAGTACCACGGGGCTGTCCCCACGGGG
CACATACTGCCATCTCCCCTCGTCCTGCGTCCCGGACCCATCTACGCTGAGGACGGAGAC
CGCGGCATCAACCAGCCCATCATCTACAGCATCTTTAGGGGAAACGTGAATGGTACATTC
ATCATCCACCCAGACTCGGGCAACCTCACCGTGGCCAGGAGTGTCCCCAGCCCCATGACC
TTCCTTCTGCTGGTGAAGGGGCAACAGGCCGACCTTGCCCGCTACTCAGTGACCCAGGTC
ACCGTGGAGGCTGTGGCTGCGGCCGGGAGCCCGCCCCGCTTCCCCCAGAGCCTGTATCGT
GGCACCGTGGCGCGTGGCGCTGGAGCGGGCGTTGTGGTCAAGGATGCAGCTGCCCCTTCT
CAGCCTCTGAGGATCCAGGCTCAGGACCCGGAGTTCTCGGACCTCAACTCGGCCATCACA
TATCGAATTACCAACCACTCACACTTCCGGATGGAGGGAGAGGTTGTGCTGACCACCACC
ACACTGGCACAGGCGGGAGCCTTCTACGCAGAGGTTGAGGCCCACAACACGGTGACCTCT
GGCACCGCAACCACAGTCATTGAGATACAAGTTTCCGAACAGGAGCCCCCCTCCACAGAT
GTCCCCCCATCCCCAGAGGCTGGAGGAACAACTGGGCCCTGGACCAGCACCACTTCCGAG
GTCCCCAGACCCCCTGAGCCCTCCCAGGGACCCTCCACGACCAGCTCTGGGGGAGGCACA
GGCCCTCATCCACCCTCTGGGACAACTCTGAGGCCACCAACCTCGTCCACACCCGGGGGG
TCCCCGGGTGCAGAAAACAGCACCTCCCACCAACCAGCCACTCCCGGTGGGGACACAGCA
CAGACCCCAAAGCCAGGAACCTCTCAGCCGATGCCCCCCGGTGTGGGAACCAGCACCTCC
CACCAACCAGCCACACCCAGTGGGGGCACAGCACAGACCCCAGAGCCAGGAACCTCTCAG
CCGATGCCCCCCAGTATGGGAACCAGCACCTCCCACCAACCAGCCACACCCGGTGGGGGC
ACAGCACAGACCCCAGAGGCAGGAACCTCTCAGCCGATGCCCCCCGGTATGGGAACCAGC
ACCTCCCACCAACCAACCACACCCGGTGGGGGCACAGCACAGACCCCAGAGCCAGGAACC
TCTCAGCCGATGCCCCTCAGCAAGAGCACCCCATCTTCAGGTGGCGGCCCCTCGGAGGAC
AAGCGCTTCTCGGTGGTGGATATGGCGGCCCTGGGCGGGGTGCTGGGTGCGCTGCTGCTG
CTGGCTCTCCTTGGCCTCGCCGTCCTTGTCCACAAGCACTATGGCCCCCGGCTCAAGTGC
TGCTCTGGCAAAGCTCCGGAGCCCCAGCCCCAAGGCTTTGACAACCAGGCGTTCCTCCCT
GACCACAAGGCCAACTGGGCGCCCGTCCCCAGCCCCACGCACGACCCCAAGCCCGCGGAG
GCACCGATGCCCGCAGAGCCCGCACCCCCCGGCCCTGCCTCCCCAGGCGGTGCCCCTGAG
CCCCCCGCAGCGGCCCGAGCTGGCGGAAGCCCCACGGCGGTGAGGTCCATCCTGACCAAG
GAGCGGCGGCCAGAGGGCGGGTACAAGGCTGTCTGGTTTGGCGAGGACATCGGGACGGAG
GCAGACGTGGTCGTTCTCAACGCGCCCACCCTGGACGTGGATGGCGCCAGTGACTCCGGC
AGCGGCGATGAGGGCGAGGGCGCGGGGAGGGGTGGGGGTCCCTACGATGCGCCCGGTGGT
GATGACTCCTACATCTAA
Protein Properties
Number of Residues 845
Molecular Weight 88222.8
Theoretical pI 4.56
Pfam Domain Function Not Available
Signals
  • 1-25
Transmembrane Regions
  • 670-690
Protein Sequence
>Cadherin-related family member 5
MGSWALLWPPLLFTGLLVRPPGTMAQAQYCSVNKDIFEVEENTNVTEPLVDIHVPEGQEV
TLGALSTPFAFRIQGNQLFLNVTPDYEEKSLLEAQLLCQSGGTLVTQLRVFVSVLDVNDN
APEFPFKTKEIRVEEDTKVNSTVIPETQLQAEDRDKDDILFYTLQEMTAGASDYFSLVSV
NRPALRLDRPLDFYERPNMTFWLLVRDTPGENVEPSHTATATLVLNVVPADLRPPWFLPC
TFSDGYVCIQAQYHGAVPTGHILPSPLVLRPGPIYAEDGDRGINQPIIYSIFRGNVNGTF
IIHPDSGNLTVARSVPSPMTFLLLVKGQQADLARYSVTQVTVEAVAAAGSPPRFPQRLYR
GTVARGAGAGVVVKDAAAPSQPLRIQAQDPEFSDLNSAITYRITNHSHFRMEGEVVLTTT
TLAQAGAFYAEVEAHNTVTSGTATTVIEIQVSEQEPPSTDVPPSPEAGGTTGPWTSTTSE
VPRPPEPSQGPSTTSSGGGTGPHPPSGTTLRPPTSSTPGGPPGAENSTSHQPATPGGDTA
QTPKPGTSQPMPPGVGTSTSHQPATPSGGTAQTPEPGTSQPMPPSMGTSTSHQPATPGGG
TAQTPEAGTSQPMPPGMGTSTSHQPTTPGGGTAQTPEPGTSQPMPLSKSTPSSGGGPSED
KRFSVVDMAALGGVLGALLLLALLGLAVLVHKHYGPRLKCCCGKAPEPQPQGFDNQAFLP
DHKANWAPVPSPTHDPKPAEAPMPAEPAPPGPASPGGAPEPPAAARAGGSPTAVRSILTK
ERRPEGGYKAVWFGEDIGTEADVVVLNAPTLDVDGASDSGSGDEGEGAGRGGGPYDAPGG
DDSYI
GenBank ID Protein 10334770
UniProtKB/Swiss-Prot ID Q9HBB8
UniProtKB/Swiss-Prot Entry Name CDHR5_HUMAN
PDB IDs Not Available
GenBank Gene ID AF258674
GeneCard ID CDHR5
GenAtlas ID CDHR5
HGNC ID HGNC:7521
References
General References
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  2. Taylor TD, Noguchi H, Totoki Y, Toyoda A, Kuroki Y, Dewar K, Lloyd C, Itoh T, Takeda T, Kim DW, She X, Barlow KF, Bloom T, Bruford E, Chang JL, Cuomo CA, Eichler E, FitzGerald MG, Jaffe DB, LaButti K, Nicol R, Park HS, Seaman C, Sougnez C, Yang X, Zimmer AR, Zody MC, Birren BW, Nusbaum C, Fujiyama A, Hattori M, Rogers J, Lander ES, Sakaki Y: Human chromosome 11 DNA sequence and analysis including novel gene identification. Nature. 2006 Mar 23;440(7083):497-500. [PubMed:16554811 ]
  3. Clark HF, Gurney AL, Abaya E, Baker K, Baldwin D, Brush J, Chen J, Chow B, Chui C, Crowley C, Currell B, Deuel B, Dowd P, Eaton D, Foster J, Grimaldi C, Gu Q, Hass PE, Heldens S, Huang A, Kim HS, Klimowski L, Jin Y, Johnson S, Lee J, Lewis L, Liao D, Mark M, Robbie E, Sanchez C, Schoenfeld J, Seshagiri S, Simmons L, Singh J, Smith V, Stinson J, Vagts A, Vandlen R, Watanabe C, Wieand D, Woods K, Xie MH, Yansura D, Yi S, Yu G, Yuan J, Zhang M, Zhang Z, Goddard A, Wood WI, Godowski P, Gray A: The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. Genome Res. 2003 Oct;13(10):2265-70. Epub 2003 Sep 15. [PubMed:12975309 ]
  4. Liu T, Qian WJ, Gritsenko MA, Camp DG 2nd, Monroe ME, Moore RJ, Smith RD: Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. J Proteome Res. 2005 Nov-Dec;4(6):2070-80. [PubMed:16335952 ]
  5. Wang B, Malik R, Nigg EA, Korner R: Evaluation of the low-specificity protease elastase for large-scale phosphoproteome analysis. Anal Chem. 2008 Dec 15;80(24):9526-33. doi: 10.1021/ac801708p. [PubMed:19007248 ]
  6. Paris MJ, Williams BR: Characterization of a 500-kb contig spanning the region between c-Ha-Ras and MUC2 on chromosome 11p15.5. Genomics. 2000 Oct 15;69(2):196-202. [PubMed:11031102 ]
  7. Goldberg M, Wei M, Tycko B, Falikovich I, Warburton D: Identification and expression analysis of the human mu-protocadherin gene in fetal and adult kidneys. Am J Physiol Renal Physiol. 2002 Sep;283(3):F454-63. [PubMed:12167596 ]