Hmdb loader
Identification
HMDB Protein ID HMDBP07906
Secondary Accession Numbers
  • 13617
Name Protocadherin beta-16
Synonyms
  1. PCDH-beta-16
  2. Protocadherin-3X
Gene Name PCDHB16
Protein Type Unknown
Biological Properties
General Function Involved in calcium ion binding
Specific Function Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain
Pathways Not Available
Reactions Not Available
GO Classification
Component
membrane
cell part
plasma membrane
Function
ion binding
cation binding
metal ion binding
binding
calcium ion binding
Process
cell adhesion
cellular process
cell-cell adhesion
homophilic cell adhesion
Cellular Location
  1. Membrane
  2. Single-pass type I membrane protein
Gene Properties
Chromosome Location Chromosome:5
Locus 5q31
SNPs PCDHB16
Gene Sequence
>2331 bp
ATGGAGATTGGATGGATGCACAATCGGAGACAAAGGCAAGTCCTTGTTTTCTTTGTTTTG
CTGAGCTTGTCTGGGGCGGGCGCCGAGTTGGGGTCCTATTCCGTAGTGGAAGAAACGGAG
AGAGGCTCTTTTGTGGCAAATCTAGGAAAAGACCTGGGGTTGGGGTTGACAGAGATGTCC
ACCCGCAAGGCCAGGATCATTTCCCAGGGGAACAAACAGCATTTGCAGCTCAAGGCTCAA
ACTGGGGATTTGCTCATAAATGAGAAGCTAGATCGAGAGGAGCTATGCGGTCCCACTGAG
CCTTGCATACTACATTTCCAAGTGTTAATGGAAAACCCTTTAGAAATATTTCAGGCTGAA
CTGAGGGTGATAGATATAAATGACCATTCTCCCATGTTCACTGAAAAGGAAATGATTCTA
AAAATACCGGAAAACAGTCCTCTAGGAACTGAGTTCCCTCTGAATCATGCTTTGGACTTG
GACGTAGGAAGCAATAATGTTCAAAACTATAAAATCAGCCCAAGCTCTCATTTCCGGGTT
CTAATCCATGAATTCAGAGATGGCAGGAAATACCCTGAGCTAGTGTTGGATAAAGAGCTG
GATCGGGAGGAGGAGCCTCAACTAAGATTAACCCTGACAGCGCTGGATGGTGGCTCTCCA
CCGCGATCTGGAACTGCTCAGGTCCGTATTGAAGTGGTGGACATCAATGATAACGCTCCT
GAGTTTGAGCAGCCCATCTACAAAGTGCAGATTCCAGAGAACAGTCCTCTTGGCTCCCTG
GTTGCCACCGTCTCCGCCAGGGATTTAGACGGCGGAGCCAATGGAAAAATATCATACACA
CTCTTTCAGCCTTCGGAGGATATTAGTAAAACTTTGGAGGTAAATCCTATGACAGGGGAA
GTTCGACTGAGAAAGCAAGTAGATTTCGAAATGGTTACGTCTTATGAAGTGCGCATCAAA
GCCACAGATGGGGGAGGTCTTTCAGGAAAGTGCACTCTTCTCCTGCAGGTGGTGGACGTG
AATGACAATCCCCCACAGGTGACCATGTCTGCACTCACCAGCCCCATCCCAGAGAACTCG
CCTGAGATAGTAGTTGCTGTTTTCAGCGTTTCAGATCCTGACTCCGGAAACAATGGGAAG
ACGATTTCCTCCATCCAGGAAGACCTTCCCTTTCTTCTAAAACCTTCAGTCAAGAACTTT
TACACCTTGGTAACGGAGAGAGCACTCGACAGAGAAGCAAGAGCTGAATATAATATCACC
CTCACCGTCACAGATATGGGGACTCCAAGGCTGAAAACGGAGCACAACATAACAGTGCAG
ATATCAGATGTCAATGATAACGCCCCCACTTTCACCCAAACCTCCTACACCCTGTTCGTC
CGCGAGAACAACAGCCCCGCCCTGCACATCGGCAGCGTCAGCGCCACAGACAGAGACTCA
GGCACCAACGCCCAGGTCACCTACTCGCTGCTGCCGCCCCAGGACCCGCACCTGCCCCTC
GCCTCCCTGGTCTCCATCAACGCAGACAACGGCCACCTGTTCGCCCTCAGGTCGCTGGAC
TACGAGGCCCTGCGGGAGTTCGAGTTCCGCGTGAGCGCCACAGACCGCGGCTCCCCGGCT
TTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTC
GTGCTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACTGAGCTGGTGCCCCGGGCGGCC
GAGCCGGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAATGCC
TGGCTGTCGTACCAGCTGCTCAAGGCCACGGAGCCCGGGCTGTTCGGTGTGTGGGCGCAC
AATGGCGAGGTGCGCACCGCCAGGCTGCTGAGCGAGCGCGACGCAGCCAAGCAGAGGCTG
GTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCACGTG
CTCCTGGTGGACGGCTTCTCCCAGCCCTTCCTGCCGCTCCCAGAGGCGGCCCCCGGCCAG
ACCCAGGCCAACTCGCTCACTGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCGTCGCTC
TTCCTCTTTTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCC
TCGGTGGGCCGCTGCTCGATGCCTGAGGGCCCCTTTCCAGGGCGTCTGGTGGACGTAAGC
GGCACCGGGACCCTGTCCCAGAGCTACCAATACGAGGTGTGTCTGACAGGAGGCTCAGAA
ACAAGTGAGTTCAAGTTCCTGAAGCCGATTATCCCCAACTTCTCTCCTTAG
Protein Properties
Number of Residues 776
Molecular Weight 84982.5
Theoretical pI 4.75
Pfam Domain Function
Signals
  • 1-28
Transmembrane Regions
  • 691-711
Protein Sequence
>Protocadherin beta-16
MEIGWMHNRRQRQVLVFFVLLSLSGAGAELGSYSVVEETERGSFVANLGKDLGLGLTEMS
TRKARIISQGNKQHLQLKAQTGDLLINEKLDREELCGPTEPCILHFQVLMENPLEIFQAE
LRVIDINDHSPMFTEKEMILKIPENSPLGTEFPLNHALDLDVGSNNVQNYKISPSSHFRV
LIHEFRDGRKYPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAP
EFEQPIYKVQIPENSPLGSLVATVSARDLDGGANGKISYTLFQPSEDISKTLEVNPMTGE
VRLRKQVDFEMVTSYEVRIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALTSPIPENS
PEIVVAVFSVSDPDSGNNGKTISSIQEDLPFLLKPSVKNFYTLVTERALDREARAEYNIT
LTVTDMGTPRLKTEHNITVQISDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDS
GTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALREFEFRVSATDRGSPA
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPRSATATLHV
LLVDGFSQPFLPLPEAAPGQTQANSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
SVGRCSMPEGPFPGRLVDVSGTGTLSQSYQYEVCLTGGSETSEFKFLKPIIPNFSP
GenBank ID Protein 14195605
UniProtKB/Swiss-Prot ID Q9NRJ7
UniProtKB/Swiss-Prot Entry Name PCDBG_HUMAN
PDB IDs Not Available
GenBank Gene ID NM_020957.1
GeneCard ID PCDHB16
GenAtlas ID PCDHB16
HGNC ID HGNC:14546
References
General References
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