Hmdb loader
Identification
HMDB Protein ID HMDBP07907
Secondary Accession Numbers
  • 13618
Name Putative protocadherin beta-18
Synonyms
  1. PCDH-beta-18
  2. PCDH-psi2
Gene Name PCDHB18
Protein Type Unknown
Biological Properties
General Function Involved in calcium ion binding
Specific Function Potential calcium-dependent cell-adhesion protein
Pathways Not Available
Reactions Not Available
GO Classification
Component
membrane
cell part
plasma membrane
Function
ion binding
cation binding
metal ion binding
binding
calcium ion binding
Process
cell adhesion
cellular process
cell-cell adhesion
homophilic cell adhesion
Cellular Location
  1. Cell membrane
  2. Single-pass membrane protein (Potential)
Gene Properties
Chromosome Location Chromosome:5
Locus 5q31
SNPs PCDHB18
Gene Sequence
>2205 bp
ATGTGGAAGACCTGGCTGCAAGGGGGGGCCAGAGTCATCTTTGACGACTATAAACCTTAT
TTGCGATTGGATCCACAGAATGGCGACTTGCTCTTAAACGAGCAGCTGGACCGGGAGGCA
CTTTGTGATCTCACAGAGCCATGTATATTGCATTTCCAGGTGTTATTTGAAAATCCGTTG
CAATTTTTTCGTGCTGAGCTTTTGGTCAAAGACATAAATGATCACACTCCCACGTTCCTA
AACAATCATATGCTTCTAAAAATCTCCGAAGGTGCTACTCTAGGAACCTTATTCCAAATA
GATAGTGCGCAGGACTTGGATGTGGGAAAGAATGGTGTTCAAAACTATACAATAAGTCCC
AATCCCCATTTCCACCTTAAATTACGGGATAGCGATGAGGGCAGAAAATATCCAGAGTTG
GTACTGGACCAATCCCTGGATCGAGAAAAGGTGTCTGAGTTTAGTTTAACGCTAACAGCC
GTGGATGGCGGGTCTCCGCCCAGGTCTGGGACTACACTGATTAACGTTGTGGTCCTGGAC
ATCAGTGACAATGCCCCTGAATTTGAGAAGCCAGTCTATGAAGTTCATGTACCTGAGAGC
AGCCCTCTGGACTCCTTGATCATCAAAGCGTCTGCTACAGATTTAGATGCAGGAATAAAT
GGAGAACTGTCTTATTCATTTTCCCACGTCTCCAGAGATGTACGGAAAACATTTGAAATC
CATCCAATTTCTGGCGAAGTCTATTTAAAAGCCCCTCTAGATTTCGAGATTATTCAATCT
TATATCATAAATATTCAGGCCATTGAAGGTGGGAGCCTTTCTGGAAAATCAAGCATTTTA
GTTCGGGTTGTAGATGTGAATGACAACCCGCCAGAAATAGCCATGACATCTCTTACCAGC
CCCATACCGGAAAACTCTTCACCTGAGATGGTGGTCGCTGTTTTCAGCATACGAGACCAA
GACGCTGGAGACAATGGGAGAACAGTTTGCTCAATTCAGGACAACCTCCCCTTTGTCTTG
AAGCCTACCTTCAAGAATTTTTACGCTCTGGTAACAGAGCACCCACTGGACAGAGAGGTC
AGAAATGAATATAACATCACCATCACCGTGACCGACTTGGGGACACCCAGGCTGAAAACC
GAGCACAACATAACCGTGCTGGTCTCCGACGTCAATGACAACGCCCCCATCTTCACCCAA
ACCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCCCGCCCTGCACATCGGCAGCGTC
AGCGCTACAGACAGAGACTCAGGCACCAACGCCCAGGTCACCTACTCGCTGCTGCCGCCC
CAGGACCCGCACCTGCCCCTCACCTCCCTGGTCTCCATCAACGCGGACAACGGCCACCTA
TTCGCCCTCAGGTCTTTGGACTACGAGGCCCTGCAGGAGTTCGGGTTTCGCGTGGGCGCC
GCAGACCACGGCTCCCCGGCGCTGAGCAGCGAGGTGCTGGTGCGCGTGCTGGTGCTGGAC
GCCAACGACAACTCGCCCTTCGTGCTGTACCCGCTGCAGAACGGCTCGGCGCCCTGCACC
GAGCTGGTACCTCGGGCGGCCGAGCCGGGCTACCTGGTGACCAAGGTGGTGGCGGTGGAC
GGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCTGCTCAAGGCCACGGAGCCCGGG
CTGTTCGGCGTGTGGGCGCACAATGGCGAGGGGCGCACCGCCAGGCTGCTGAGCGAGCGC
GACGCGGCCAAGCACAGGCTGGTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGCGCTCG
GCCACCGCCACGCTGCACGTGCTCCTGGTGGAGGGCTTCTCTCAGCCCTACCTGCCTCTC
ACGGAGGCTGCCCCCTCCCAGGCCCAGGCCGACTCCCTCACCGTCTACCTGGTGGTGGCG
TTGGCCTCGGTGTCGTCGCTCTTCCTCTTCTCGGTGTTCCTGTTCGTGGCGGTGCGGCTG
TGCAGGAGGAGCAGGGCGGCCTCGATGGGTCGCTGCTCGGTGCCCGAGTGTCCCTTTCCA
GGGCATCTGGTAGACGTGAGCGGCACCGGGACCCTATCCCAGAGCTACCAGTACGAGGTG
TGTCTGACGGGAGGCTCAGGGGCAAATGAGTTCAAGTTCCTGAAGCCGGTGATTCCCAAT
CTCCTGTCCCGCGACAGCGAAATGGAGAAAGCCCCACCTTTCTGA
Protein Properties
Number of Residues 734
Molecular Weight 80472.1
Theoretical pI 4.64
Pfam Domain Function
Signals
  • None
Transmembrane Regions
  • 638-658
Protein Sequence
>Putative protocadherin beta-18
MWKTWLQGGARVIFDDYKPYLRLDPQNGDLLLNEQLDREALCDLTEPCILHFQVLFENPL
QFFRAELLVKDINDHTPTFLNNHMLLKISEGATLGTLFQIDSAQDLDVGKNGVQNYTISP
NPHFHLKLRDSDEGRKYPELVLDQSLDREKVSEFSLTLTAVDGGSPPRSGTTLINVVVLD
ISDNAPEFEKPVYEVHVPESSPLDSLIIKASATDLDAGINGELSYSFSHVSRDVRKTFEI
HPISGEVYLKAPLDFEIIQSYIINIQAIEGGSLSGKSSILVRVVDVNDNPPEIAMTSLTS
PIPENSSPEMVVAVFSIRDQDAGDNGRTVCSIQDNLPFVLKPTFKNFYALVTEHPLDREV
RNEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPIFTQTSYTLFVRENNSPALHIGSV
SATDRDSGTNAQVTYSLLPPQDPHLPLTSLVSINADNGHLFALRSLDYEALQEFGFRVGA
ADHGSPALSSEVLVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVD
GDSGQNAWLSYQLLKATEPGLFGVWAHNGEGRTARLLSERDAAKHRLVVLVKDNGEPPRS
ATATLHVLLVEGFSQPYLPLTEAAPSQAQADSLTVYLVVALASVSSLFLFSVFLFVAVRL
CRRSRAASMGRCSVPECPFPGHLVDVSGTGTLSQSYQYEVCLTGGSGANEFKFLKPVIPN
LLSRDSEMEKAPPF
GenBank ID Protein 14009451
UniProtKB/Swiss-Prot ID Q96TA0
UniProtKB/Swiss-Prot Entry Name PCDBI_HUMAN
PDB IDs Not Available
GenBank Gene ID AF217743
GeneCard ID PCDHB18
GenAtlas ID PCDHB18
HGNC ID HGNC:14548
References
General References
  1. Ota T, Suzuki Y, Nishikawa T, Otsuki T, Sugiyama T, Irie R, Wakamatsu A, Hayashi K, Sato H, Nagai K, Kimura K, Makita H, Sekine M, Obayashi M, Nishi T, Shibahara T, Tanaka T, Ishii S, Yamamoto J, Saito K, Kawai Y, Isono Y, Nakamura Y, Nagahari K, Murakami K, Yasuda T, Iwayanagi T, Wagatsuma M, Shiratori A, Sudo H, Hosoiri T, Kaku Y, Kodaira H, Kondo H, Sugawara M, Takahashi M, Kanda K, Yokoi T, Furuya T, Kikkawa E, Omura Y, Abe K, Kamihara K, Katsuta N, Sato K, Tanikawa M, Yamazaki M, Ninomiya K, Ishibashi T, Yamashita H, Murakawa K, Fujimori K, Tanai H, Kimata M, Watanabe M, Hiraoka S, Chiba Y, Ishida S, Ono Y, Takiguchi S, Watanabe S, Yosida M, Hotuta T, Kusano J, Kanehori K, Takahashi-Fujii A, Hara H, Tanase TO, Nomura Y, Togiya S, Komai F, Hara R, Takeuchi K, Arita M, Imose N, Musashino K, Yuuki H, Oshima A, Sasaki N, Aotsuka S, Yoshikawa Y, Matsunawa H, Ichihara T, Shiohata N, Sano S, Moriya S, Momiyama H, Satoh N, Takami S, Terashima Y, Suzuki O, Nakagawa S, Senoh A, Mizoguchi H, Goto Y, Shimizu F, Wakebe H, Hishigaki H, Watanabe T, Sugiyama A, Takemoto M, Kawakami B, Yamazaki M, Watanabe K, Kumagai A, Itakura S, Fukuzumi Y, Fujimori Y, Komiyama M, Tashiro H, Tanigami A, Fujiwara T, Ono T, Yamada K, Fujii Y, Ozaki K, Hirao M, Ohmori Y, Kawabata A, Hikiji T, Kobatake N, Inagaki H, Ikema Y, Okamoto S, Okitani R, Kawakami T, Noguchi S, Itoh T, Shigeta K, Senba T, Matsumura K, Nakajima Y, Mizuno T, Morinaga M, Sasaki M, Togashi T, Oyama M, Hata H, Watanabe M, Komatsu T, Mizushima-Sugano J, Satoh T, Shirai Y, Takahashi Y, Nakagawa K, Okumura K, Nagase T, Nomura N, Kikuchi H, Masuho Y, Yamashita R, Nakai K, Yada T, Nakamura Y, Ohara O, Isogai T, Sugano S: Complete sequencing and characterization of 21,243 full-length human cDNAs. Nat Genet. 2004 Jan;36(1):40-5. Epub 2003 Dec 21. [PubMed:14702039 ]
  2. Mayya V, Lundgren DH, Hwang SI, Rezaul K, Wu L, Eng JK, Rodionov V, Han DK: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. Sci Signal. 2009 Aug 18;2(84):ra46. doi: 10.1126/scisignal.2000007. [PubMed:19690332 ]
  3. Wu Q, Zhang T, Cheng JF, Kim Y, Grimwood J, Schmutz J, Dickson M, Noonan JP, Zhang MQ, Myers RM, Maniatis T: Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404. [PubMed:11230163 ]
  4. Wu Q, Maniatis T: A striking organization of a large family of human neural cadherin-like cell adhesion genes. Cell. 1999 Jun 11;97(6):779-90. [PubMed:10380929 ]
  5. Vanhalst K, Kools P, Vanden Eynde E, van Roy F: The human and murine protocadherin-beta one-exon gene families show high evolutionary conservation, despite the difference in gene number. FEBS Lett. 2001 Apr 20;495(1-2):120-5. [PubMed:11322959 ]