Hmdb loader
Survey
Identification
HMDB Protein ID HMDBP08266
Secondary Accession Numbers
  • 13978
Name tRNA-dihydrouridine synthase 1-like
Synonyms Not Available
Gene Name DUS1L
Protein Type Unknown
Biological Properties
General Function Involved in catalytic activity
Specific Function Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs
Pathways Not Available
Reactions Not Available
GO Classification
Function
oxidoreductase activity, acting on the ch-ch group of donors
binding
catalytic activity
nucleoside binding
purine nucleoside binding
adenyl nucleotide binding
oxidoreductase activity
fad or fadh2 binding
trna dihydrouridine synthase activity
Process
rna metabolic process
ncrna metabolic process
trna metabolic process
trna processing
metabolic process
macromolecule metabolic process
cellular macromolecule metabolic process
oxidation reduction
Cellular Location Not Available
Gene Properties
Chromosome Location Chromosome:1
Locus 17q25.3
SNPs DUS1L
Gene Sequence
>1422 bp
ATGCCAAAGCTGCAGGGCTTCGAGTTCTGGAGCCGCACCCTGCGAGGGGCCCGCCACGTC
GTGGCCCCCATGGTGGACCAGAGCGAGCTGGCCTGGAGGCTGCTGAGCCGGCGCCACGGG
GCACAGCTCTGCTACACGCCCATGCTGCATGCCCAGGTCTTTGTCCGCGACGCCAACTAC
CGGAAGGAGAACCTGTACTGCGAGGTGTGCCCCGAGGACCGGCCCCTCATCGTGCAGTTC
TGTGCCAATGACCCGGAGGTGTTTGTTCAGGCGGCTCTCCTGGCTCAGGATTACTGTGAC
GCCATTGACCTGAACTTGGGCTGCCCACAGATGATAGCCAAGAGAGGTCACTATGGCGCC
TTTCTGCAGGACGAGTGGGACCTGCTCCAAAGAATGATTTTGCTGGCCCACGAGAAACTC
TCTGTTCCTGTCACGTGCAAAATCCGTGTCTTCCCGGAGATTGACAAGACCGTGAGGTAC
GCCCAGATGCTGGAGAAGGCCGGCTGCCAGTTGCTGACGGTGCACGGACGCACCAAGGAG
CAGAAGGGGCCCCTGTCGGGTGCAGCGTCCTGGGAGCATATCAAGGCTGTGCGGAAGGCT
GTGGCCATCCCTGTGTTTGCTAACGGGAACATCCAGTGCCTGCAGGACGTGGAGCGCTGC
CTCCGGGACACGGGTGTGCAGGGCGTCATGAGCGCAGAGGGCAACCTGCACAACCCCGCC
CTGTTCGAGGGCCGGAGCCCTGCCGTGTGGGAGCTGGCCGAGGAGTATCTGGACATCGTG
CGGGAGCACCCCTGCCCCCTGTCCTACGTCCGGGCCCACCTCTTCAAGCTGTGGCACCAC
ACGCTGCAGGTGCACCAGGAGCTGCGAGAGGAGCTGGCCAAGGTGAAGACCCTGGAGGGC
ATCGCTGCTGTGAGCCAGGAGCTGAAGCTGCGGTGTCAGGAGGAGATATCCAGGCAGGAG
GGAGCGAAGCCCACCGGCGACTTGCCCTTCCACTGGATCTGCCAGCCCTACATCCGGCCG
GGGCCCAGGGAGGGGAGCAAGGAGAAGGCAGGTGCGCGCAGCAAGCGGGCCCTGGAGGAA
GAGGAGGGTGGCACGGAGGTCCTGTCCAAGAACAAGCAAAAGAAGCAGCTGAGGAACCCC
CACAAGACCTTCGACCCCTCTCTGAAGCCAAAATATGCAAAGTGTGACCAGTGTGGAAAC
CCAAAGGGCAACAGATGTGTGTTCAGCCTGTGCCGCGGCTGCTGCAAGAAGCGAGCCTCC
AAAGAGACTGCAGACTGCCCAGGTCACGGATTGCTTTTTAAAACCAAATTGGAGAAGTCT
CTGGCCTGGAAAGAGGCCCAGCCTGAGCTGCAGGAGCCTCAGCCAGCAGCACCTGGAACA
CCAGGTGGCTTCTCCGAAGTCATGGGCAGTGCCCTGGCCTGA
Protein Properties
Number of Residues 473
Molecular Weight 53230.0
Theoretical pI 8.37
Pfam Domain Function
Signals
  • None
Transmembrane Regions
  • None
Protein Sequence
>tRNA-dihydrouridine synthase 1-like
MPKLQGFEFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANY
RKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGA
FLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKE
QKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPA
LFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEG
IAAVSQELKLRCQEEISRQEGAKPTGDLPFHWICQPYIRPGPREGSKEKAGARSKRALEE
EEGGTEVLSKNKQKKQLRNPHKTFDPSLKPKYAKCDQCGNPKGNRCVFSLCRGCCKKRAS
KETADCPGHGLLFKTKLEKSLAWKEAQPELQEPQPAAPGTPGGFSEVMGSALA
GenBank ID Protein 40807366
UniProtKB/Swiss-Prot ID Q6P1R4
UniProtKB/Swiss-Prot Entry Name DUS1L_HUMAN
PDB IDs Not Available
GenBank Gene ID NM_022156.3
GeneCard ID DUS1L
GenAtlas ID DUS1L
HGNC ID HGNC:30086
References
General References
  1. Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res. 2004 Oct;14(10B):2121-7. [PubMed:15489334 ]
  2. Gauci S, Helbig AO, Slijper M, Krijgsveld J, Heck AJ, Mohammed S: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. Anal Chem. 2009 Jun 1;81(11):4493-501. doi: 10.1021/ac9004309. [PubMed:19413330 ]
  3. Zody MC, Garber M, Adams DJ, Sharpe T, Harrow J, Lupski JR, Nicholson C, Searle SM, Wilming L, Young SK, Abouelleil A, Allen NR, Bi W, Bloom T, Borowsky ML, Bugalter BE, Butler J, Chang JL, Chen CK, Cook A, Corum B, Cuomo CA, de Jong PJ, DeCaprio D, Dewar K, FitzGerald M, Gilbert J, Gibson R, Gnerre S, Goldstein S, Grafham DV, Grocock R, Hafez N, Hagopian DS, Hart E, Norman CH, Humphray S, Jaffe DB, Jones M, Kamal M, Khodiyar VK, LaButti K, Laird G, Lehoczky J, Liu X, Lokyitsang T, Loveland J, Lui A, Macdonald P, Major JE, Matthews L, Mauceli E, McCarroll SA, Mihalev AH, Mudge J, Nguyen C, Nicol R, O'Leary SB, Osoegawa K, Schwartz DC, Shaw-Smith C, Stankiewicz P, Steward C, Swarbreck D, Venkataraman V, Whittaker CA, Yang X, Zimmer AR, Bradley A, Hubbard T, Birren BW, Rogers J, Lander ES, Nusbaum C: DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. Nature. 2006 Apr 20;440(7087):1045-9. [PubMed:16625196 ]