Hmdb loader
Identification
HMDB Protein ID HMDBP11007
Secondary Accession Numbers
  • 17331
Name Synaptic vesicle membrane protein VAT-1 homolog-like
Synonyms Not Available
Gene Name VAT1L
Protein Type Enzyme
Biological Properties
General Function Involved in zinc ion binding
Specific Function Not Available
Pathways Not Available
Reactions Not Available
GO Classification
Function
ion binding
cation binding
metal ion binding
binding
catalytic activity
transition metal ion binding
zinc ion binding
oxidoreductase activity
Process
metabolic process
oxidation reduction
Cellular Location Not Available
Gene Properties
Chromosome Location Chromosome:1
Locus 16q23.1
SNPs VAT1L
Gene Sequence
>1260 bp
ATGGCCAAGGAAGGCGTGGAGAAGGCGGAGGAGACGGAGCAAATGATCGAGAAGGAGGCA
GGCAAGGAGCCGGCGGAGGGCGGCGGCGGCGACGGCTCGCACCGCCTCGGGGACGCCCAG
GAGATGCGCGCGGTGGTGCTGGCTGGCTTCGGGGGGCTCAACAAGCTGCGGCTCTTCAGG
AAGGCCATGCCCGAGCCTCAGGACGGCGAGCTCAAGATCCGCGTCAAAGCCTGTGGATTA
AACTTCATTGACTTGATGGTGCGACAAGGGAATATTGACAACCCTCCCAAGACTCCCCTG
GTGCCAGGATTTGAGTGTTCTGGGATTGTTGAAGCTCTGGGGGACAGCGTGAAAGGATAT
GAGATTGGAGACCGTGTCATGGCATTTGTCAATTACAATGCCTGGGCAGAGGTGGTCTGC
ACACCAGTGGAGTTTGTCTACAAGATCCCGGATGACATGAGCTTCTCGGAGGCTGCTGCA
TTCCCCATGAACTTCGTCACAGCCTATGTGATGCTGTTTGAAGTTGCCAACCTCCGGGAA
GGGATGTCTGTGCTCGTGCACTCAGCTGGTGGGGGCGTGGGTCAAGCTGTGGCTCAGCTG
TGTTCCACTGTCCCCAACGTGACTGTCTTTGGAACAGCCTCTACTTTCAAGCATGAAGCA
ATCAAAGACTCTGTGACCCACCTCTTTGACAGAAATGCAGACTACGTGCAAGAAGTTAAA
AGAATCTCTGCTGAAGGTGTGGACATCGTTTTGGATTGCCTCTGTGGGGACAACACTGGA
AAAGGTCTCAGTCTTCTCAAACCCCTGGGAACCTACATTTTATATGGCTCATCCAACATG
GTAACTGGAGAGACCAAGAGCTTCTTCAGCTTTGCAAAATCATGGTGGCAGGTGGAGAAG
GTGAACCCCATCAAGCTGTATGAGGAGAACAAAGTCATCGCGGGGTTTTCCCTTTTAAAT
CTGCTCTTCAAACAAGGCCGGGCGGGCCTCATTCGGGGAGTGGTGGAAAAACTCATAGGG
CTCTACAACCAGAAGAAGATCAAGCCTGTGGTGGACTCCTTGTGGGCTCTGGAGGAGGTG
AAGGAGGCCATGCAGCGGATTCACGACCGAGGGAACATTGGCAAGTTAATTCTGGATGTA
GAAAAGACCCCAACTCCACTGATGGCCAATGACAGCACAGAGACCAGTGAAGCAGGGGAA
GAGGAGGAGGACCACGAGGGAGACAGCGAGAACAAGGAGCGGATGCCCTTTATCCAGTAA
Protein Properties
Number of Residues 419
Molecular Weight 45899.2
Theoretical pI 4.7
Pfam Domain Function
Signals
  • None
Transmembrane Regions
  • None
Protein Sequence
>Synaptic vesicle membrane protein VAT-1 homolog-like
MAKEGVEKAEETEQMIEKEAGKEPAEGGGGDGSHRLGDAQEMRAVVLAGFGGLNKLRLFR
KAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGY
EIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLRE
GMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHLFDRNADYVQEVK
RISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEK
VNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEV
KEAMQRIHDRGNIGKLILDVEKTPTPLMANDSTETSEAGEEEEDHEGDSENKERMPFIQ
GenBank ID Protein 24308257
UniProtKB/Swiss-Prot ID Q9HCJ6
UniProtKB/Swiss-Prot Entry Name VAT1L_HUMAN
PDB IDs Not Available
GenBank Gene ID NM_020927.1
GeneCard ID VAT1L
GenAtlas ID VAT1L
HGNC ID HGNC:29315
References
General References
  1. Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res. 2004 Oct;14(10B):2121-7. [PubMed:15489334 ]
  2. Nagase T, Kikuno R, Nakayama M, Hirosawa M, Ohara O: Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. DNA Res. 2000 Aug 31;7(4):273-81. [PubMed:10997877 ]