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Showing metabocard for PE(16:0/18:1(11Z)) (HMDB0008926)

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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2008-09-12 01:45:15 UTC
Update Date2022-11-30 19:03:22 UTC
HMDB IDHMDB0008926
Secondary Accession Numbers
  • HMDB08926
Metabolite Identification
Common NamePE(16:0/18:1(11Z))
DescriptionPE(16:0/18:1(11Z)) is a phosphatidylethanolamine (PE or GPEtn). It is a glycerophospholipid in which a phosphorylethanolamine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, glycerophosphoethanolamines can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PE(16:0/18:1(11Z)), in particular, consists of one chain of palmitic acid at the C-1 position and one chain of vaccenic acid at the C-2 position. The palmitic acid moiety is derived from fish oils, milk fats, vegetable oils and animal fats, while the vaccenic acid moiety is derived from butter fat and animal fat. Phospholipids, are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling.While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PEs are neutral zwitterions at physiological pH. They mostly have palmitic or stearic acid on carbon 1 and a long chain unsaturated fatty acid (e.g. 18:2, 20:4 and 22:6) on carbon 2. PE synthesis can occur via two pathways. The first requires that ethanolamine be activated by phosphorylation and then coupled to CDP. The ethanolamine is then transferred from CDP-ethanolamine to phosphatidic acid to yield PE. The second involves the decarboxylation of PS.
Structure
Data?1582752645
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0008926 (PE(16:0/18:1(11Z)))

m24
  Mrv1572012151513432D          

 50 49  0  0  1  0            999 V2000
   19.3839   -5.5239    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.7088   -5.9135    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   18.0337   -5.5239    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.0590   -5.9135    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.3586   -5.9135    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.1819   -6.6932    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.7340   -5.5239    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   20.3443   -4.8487    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.1238   -6.1990    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.4092   -5.1341    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.0843   -5.5239    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.7594   -5.1341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.4345   -5.5239    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   19.2965   -6.7228    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.6440   -5.5010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.6440   -4.7296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.9299   -5.9142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.2157   -5.5010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5016   -5.9142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7875   -5.5010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0734   -5.9142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3593   -5.5010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6452   -5.9142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9311   -5.5010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2170   -5.9142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5028   -5.5010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7887   -5.9142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0746   -5.5010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3605   -5.9142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6463   -5.5010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9322   -5.9142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4675   -7.1057    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4675   -7.8771    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.7534   -6.6925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0392   -7.1057    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3251   -6.6925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6110   -7.1057    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8969   -6.6925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1828   -7.1057    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4686   -6.6925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7545   -7.1057    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0404   -6.6925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3263   -7.1057    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5013   -7.1057    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7872   -6.6925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0731   -7.1057    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3590   -6.6925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6448   -7.1057    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9307   -6.6925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2166   -7.1057    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  2  6  1  0  0  0  0
  2 14  1  1  0  0  0
  3  2  1  0  0  0  0
  4  1  1  0  0  0  0
  5  3  1  0  0  0  0
  5 15  1  0  0  0  0
  7  4  1  0  0  0  0
  8  7  2  0  0  0  0
  9  7  1  0  0  0  0
 10  7  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 13 12  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 32  6  1  0  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  2  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
M  END
Download

3D MOL for HMDB0008926 (PE(16:0/18:1(11Z)))

HMDB0008926
     RDKit          3D
PE(16:0/18:1(11Z))
125124  0  0  0  0  0  0  0  0999 V2000
   13.1198   -2.7921    2.1207 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4632   -1.6344    1.2349 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4320   -1.4548    0.1729 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0349   -1.1799    0.7205 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0149    0.0810    1.5471 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3839    1.3229    0.8861 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7094    2.0321   -0.1356 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5479    1.9142   -0.6775 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5261    0.9502   -0.3455 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1855    1.6312    0.0362 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7002    2.4061   -1.1288 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4180    3.0564   -0.9197 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1672    2.3557   -0.5751 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6409    1.3003   -1.4428 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2132   -0.0251   -1.6114 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1098   -1.1290   -0.6738 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5105   -1.1852    0.7148 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7864   -0.2865    1.6290 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3641    0.3841    2.5509 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4045   -0.1198    1.5308 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7040    0.7417    2.3994 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6759   -0.1166    3.1322 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1854   -0.6660    2.1318 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2303   -1.4746    2.4850 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4309   -1.7384    3.7016 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1194   -2.0302    1.4135 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2685   -1.0833    1.1494 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1577   -1.6757    0.0746 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3046   -0.7304   -0.2380 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1763   -0.4217    0.9196 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9180   -1.5510    1.5363 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9049   -2.1983    0.5761 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8976   -1.1491    0.0966 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6642   -0.5035    1.2178 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5779    0.5285    0.6747 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6358    0.0167   -0.2971 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5155   -0.9642    0.4000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5669   -1.5520   -0.4455 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.5748   -0.6511   -1.0522 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.0960    0.3551   -2.0465 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9574    1.7176    1.4762 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1232    0.9650    0.6683 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7707    1.8521   -0.4304 P   0  0  0  0  0  5  0  0  0  0  0  0
   -1.9471    2.4568    0.3127 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1688    3.1293   -1.0102 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2311    0.8781   -1.7066 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8584    1.5287   -2.7426 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2230    0.5333   -3.8408 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8819    1.1470   -4.9492 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.6046   -3.5759    1.5168 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.0834   -3.1883    2.5476 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4662   -2.5055    2.9671 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.4189   -1.8863    0.7025 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6929   -0.7030    1.7927 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.7452   -0.7055   -0.5753 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.3563   -2.4198   -0.3829 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.7742   -2.0211    1.3830 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3679   -1.1618   -0.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1061    0.0714    2.1836 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8273   -0.1392    2.3511 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4561    1.1140    0.4583 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7477    2.0672    1.7305 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3141    2.9265   -0.6056 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3115    2.6517   -1.5239 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2718    0.3846   -1.2926 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6834    0.2158    0.4170 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4691    0.8272    0.2389 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2997    2.2131    0.9632 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4724    3.2479   -1.3220 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7928    1.7839   -2.0546 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2093    3.6605   -1.8903 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5910    3.8773   -0.1351 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0776    2.0925    0.4914 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3703    3.2374   -0.6103 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5366    1.1344   -1.1404 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4622    1.7972   -2.4741 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3589    0.0978   -1.7915 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9294   -0.4344   -2.6627 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0127   -1.5665   -0.7167 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6155   -2.0375   -1.2407 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5984   -1.1218    0.9517 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2262   -2.2475    1.0849 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3449    1.2526    3.1065 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2147   -0.9681    3.5837 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1053    0.4480    3.8803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5394   -2.1828    0.4694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4581   -3.0110    1.7383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8787   -0.1161    0.8123 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8479   -0.8949    2.0793 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5549   -1.7708   -0.8478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4941   -2.6766    0.3649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8534   -1.1534   -1.0784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8432    0.2187   -0.5779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9111    0.3575    0.6031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5982    0.0756    1.7401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2315   -2.3606    1.8684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4595   -1.2070    2.4198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4544   -2.9592    1.1316 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4402   -2.6431   -0.3067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6418   -1.6981   -0.5386 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4506   -0.4001   -0.5685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9791    0.0185    1.9336 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2089   -1.2614    1.7916 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1268    1.0848    1.4689 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -12.1984    0.9655   -0.5549 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0008926 (PE(16:0/18:1(11Z)))

m24
  Mrv1572012151513432D          

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M  END
> <DATABASE_ID>
HMDB0008926

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@](COC(=O)CCCCCCCCCCCCCCC)(COP(O)(=O)OCCN)OC(=O)CCCCCCCCC\C=C/CCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C39H76NO8P/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-39(42)48-37(36-47-49(43,44)46-34-33-40)35-45-38(41)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h13,15,37H,3-12,14,16-36,40H2,1-2H3,(H,43,44)/b15-13-/t37-/m1/s1

> <INCHI_KEY>
LYJWNHGFGVVCAO-IEHWZJNJSA-N

> <FORMULA>
C39H76NO8P

> <MOLECULAR_WEIGHT>
718.01

> <EXACT_MASS>
717.530855409

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
125

> <JCHEM_AVERAGE_POLARIZABILITY>
88.0818176637218

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-aminoethoxy)[(2R)-3-(hexadecanoyloxy)-2-[(11Z)-octadec-11-enoyloxy]propoxy]phosphinic acid

> <ALOGPS_LOGP>
8.42

> <JCHEM_LOGP>
10.978131032470086

> <ALOGPS_LOGS>
-7.02

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8688003136581992

> <JCHEM_PKA_STRONGEST_BASIC>
9.999929336362278

> <JCHEM_POLAR_SURFACE_AREA>
134.38

> <JCHEM_REFRACTIVITY>
201.32250000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
40

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.91e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-aminoethoxy((2R)-3-(hexadecanoyloxy)-2-[(11Z)-octadec-11-enoyloxy]propoxy)phosphinic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0008926 (PE(16:0/18:1(11Z)))

HMDB0008926
     RDKit          3D
PE(16:0/18:1(11Z))
125124  0  0  0  0  0  0  0  0999 V2000
   13.1198   -2.7921    2.1207 C   0  0  0  0  0  0  0  0  0  0  0  0
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   12.4320   -1.4548    0.1729 C   0  0  0  0  0  0  0  0  0  0  0  0
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   11.3839    1.3229    0.8861 C   0  0  0  0  0  0  0  0  0  0  0  0
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   13.6929   -0.7030    1.7927 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.7452   -0.7055   -0.5753 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.3563   -2.4198   -0.3829 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.7742   -2.0211    1.3830 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3679   -1.1618   -0.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1061    0.0714    2.1836 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8273   -0.1392    2.3511 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4561    1.1140    0.4583 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7477    2.0672    1.7305 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3141    2.9265   -0.6056 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3115    2.6517   -1.5239 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2718    0.3846   -1.2926 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6834    0.2158    0.4170 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4691    0.8272    0.2389 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2997    2.2131    0.9632 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4724    3.2479   -1.3220 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7928    1.7839   -2.0546 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2093    3.6605   -1.8903 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5910    3.8773   -0.1351 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0776    2.0925    0.4914 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3703    3.2374   -0.6103 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5366    1.1344   -1.1404 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4622    1.7972   -2.4741 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3589    0.0978   -1.7915 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9294   -0.4344   -2.6627 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0127   -1.5665   -0.7167 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6155   -2.0375   -1.2407 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5984   -1.1218    0.9517 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2262   -2.2475    1.0849 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3449    1.2526    3.1065 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2147   -0.9681    3.5837 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1053    0.4480    3.8803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5394   -2.1828    0.4694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4581   -3.0110    1.7383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8787   -0.1161    0.8123 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8479   -0.8949    2.0793 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5549   -1.7708   -0.8478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4941   -2.6766    0.3649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8534   -1.1534   -1.0784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8432    0.2187   -0.5779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9111    0.3575    0.6031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5982    0.0756    1.7401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2315   -2.3606    1.8684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4595   -1.2070    2.4198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4544   -2.9592    1.1316 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4402   -2.6431   -0.3067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6418   -1.6981   -0.5386 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4506   -0.4001   -0.5685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9791    0.0185    1.9336 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2089   -1.2614    1.7916 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1268    1.0848    1.4689 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9602    1.2591    0.1044 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1984    0.9655   -0.5549 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1787   -0.4093   -1.2115 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9813   -0.4419    1.2979 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8921   -1.8051    0.8435 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.1137   -2.1716   -1.2990 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.1612   -2.3248    0.1432 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.1511   -0.1382   -0.2161 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.3605   -1.3085   -1.5256 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.1193    0.1470   -2.4854 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.1476    1.3706   -1.6205 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.8154    0.3896   -2.9433 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4137    2.4728    2.0894 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7083    2.2349    0.8621 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4415    2.9602   -1.9589 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2330    2.3431   -3.1672 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8254    1.9584   -2.3724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8322   -0.2801   -3.4001 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2538    0.0637   -4.1515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9222    1.0878   -4.8499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5847    0.8165   -5.8721 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
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  8  9  1  0
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 49125  1  0
M  END
Download

PDB for HMDB0008926 (PE(16:0/18:1(11Z)))

HEADER    PROTEIN                                 15-DEC-15   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: m24                                               
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-DEC-15         0                                  
HETATM    1  C   UNK     0      36.183 -10.311   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      34.923 -11.039   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      33.663 -10.311   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      37.443 -11.039   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      32.403 -11.039   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      33.940 -12.494   0.000  0.00  0.00           O+0
HETATM    7  P   UNK     0      38.703 -10.311   0.000  0.00  0.00           P+0
HETATM    8  O   UNK     0      37.976  -9.051   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      39.431 -11.571   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      39.964  -9.584   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      41.224 -10.311   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      42.484  -9.584   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0      43.744 -10.311   0.000  0.00  0.00           N+0
HETATM   14  H   UNK     0      36.020 -12.549   0.000  0.00  0.00           H+0
HETATM   15  C   UNK     0      31.069 -10.269   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      31.069  -8.829   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      29.736 -11.040   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      28.403 -10.269   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      27.070 -11.040   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      25.737 -10.269   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      24.404 -11.040   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      23.071 -10.269   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      21.738 -11.040   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      20.405 -10.269   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      19.072 -11.040   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      17.739 -10.269   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      16.406 -11.040   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      15.073 -10.269   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      13.740 -11.040   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      12.406 -10.269   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      11.074 -11.040   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      32.606 -13.264   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      32.606 -14.704   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      31.273 -12.493   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      29.940 -13.264   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      28.607 -12.493   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      27.274 -13.264   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      25.941 -12.493   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      24.608 -13.264   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      23.275 -12.493   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      21.942 -13.264   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      20.609 -12.493   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      19.276 -13.264   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      17.736 -13.264   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      16.403 -12.493   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      15.070 -13.264   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      13.737 -12.493   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      12.404 -13.264   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      11.071 -12.493   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0       9.738 -13.264   0.000  0.00  0.00           C+0
CONECT    1    2    4                                                       
CONECT    2    1    6   14    3                                             
CONECT    3    2    5                                                       
CONECT    4    1    7                                                       
CONECT    5    3   15                                                       
CONECT    6    2   32                                                       
CONECT    7    4    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12                                                            
CONECT   14    2                                                            
CONECT   15    5   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30                                                            
CONECT   32    6   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49                                                            
MASTER        0    0    0    0    0    0    0    0   50    0   98    0
END
Download

3D PDB for HMDB0008926 (PE(16:0/18:1(11Z)))

COMPND    HMDB0008926
HETATM    1  C1  UNL     1      13.120  -2.792   2.121  1.00  0.00           C  
HETATM    2  C2  UNL     1      13.463  -1.634   1.235  1.00  0.00           C  
HETATM    3  C3  UNL     1      12.432  -1.455   0.173  1.00  0.00           C  
HETATM    4  C4  UNL     1      11.035  -1.180   0.721  1.00  0.00           C  
HETATM    5  C5  UNL     1      11.015   0.081   1.547  1.00  0.00           C  
HETATM    6  C6  UNL     1      11.384   1.323   0.886  1.00  0.00           C  
HETATM    7  C7  UNL     1      10.709   2.032  -0.136  1.00  0.00           C  
HETATM    8  C8  UNL     1       9.548   1.914  -0.678  1.00  0.00           C  
HETATM    9  C9  UNL     1       8.526   0.950  -0.345  1.00  0.00           C  
HETATM   10  C10 UNL     1       7.186   1.631   0.036  1.00  0.00           C  
HETATM   11  C11 UNL     1       6.700   2.406  -1.129  1.00  0.00           C  
HETATM   12  C12 UNL     1       5.418   3.056  -0.920  1.00  0.00           C  
HETATM   13  C13 UNL     1       4.167   2.356  -0.575  1.00  0.00           C  
HETATM   14  C14 UNL     1       3.641   1.300  -1.443  1.00  0.00           C  
HETATM   15  C15 UNL     1       4.213  -0.025  -1.611  1.00  0.00           C  
HETATM   16  C16 UNL     1       4.110  -1.129  -0.674  1.00  0.00           C  
HETATM   17  C17 UNL     1       4.511  -1.185   0.715  1.00  0.00           C  
HETATM   18  C18 UNL     1       3.786  -0.286   1.629  1.00  0.00           C  
HETATM   19  O1  UNL     1       4.364   0.384   2.551  1.00  0.00           O  
HETATM   20  O2  UNL     1       2.405  -0.120   1.531  1.00  0.00           O  
HETATM   21  C19 UNL     1       1.704   0.742   2.399  1.00  0.00           C  
HETATM   22  C20 UNL     1       0.676  -0.117   3.132  1.00  0.00           C  
HETATM   23  O3  UNL     1      -0.185  -0.666   2.132  1.00  0.00           O  
HETATM   24  C21 UNL     1      -1.230  -1.475   2.485  1.00  0.00           C  
HETATM   25  O4  UNL     1      -1.431  -1.738   3.702  1.00  0.00           O  
HETATM   26  C22 UNL     1      -2.119  -2.030   1.414  1.00  0.00           C  
HETATM   27  C23 UNL     1      -3.268  -1.083   1.149  1.00  0.00           C  
HETATM   28  C24 UNL     1      -4.158  -1.676   0.075  1.00  0.00           C  
HETATM   29  C25 UNL     1      -5.305  -0.730  -0.238  1.00  0.00           C  
HETATM   30  C26 UNL     1      -6.176  -0.422   0.920  1.00  0.00           C  
HETATM   31  C27 UNL     1      -6.918  -1.551   1.536  1.00  0.00           C  
HETATM   32  C28 UNL     1      -7.905  -2.198   0.576  1.00  0.00           C  
HETATM   33  C29 UNL     1      -8.898  -1.149   0.097  1.00  0.00           C  
HETATM   34  C30 UNL     1      -9.664  -0.503   1.218  1.00  0.00           C  
HETATM   35  C31 UNL     1     -10.578   0.529   0.675  1.00  0.00           C  
HETATM   36  C32 UNL     1     -11.636   0.017  -0.297  1.00  0.00           C  
HETATM   37  C33 UNL     1     -12.516  -0.964   0.400  1.00  0.00           C  
HETATM   38  C34 UNL     1     -13.567  -1.552  -0.446  1.00  0.00           C  
HETATM   39  C35 UNL     1     -14.575  -0.651  -1.052  1.00  0.00           C  
HETATM   40  C36 UNL     1     -14.096   0.355  -2.046  1.00  0.00           C  
HETATM   41  C37 UNL     1       0.957   1.718   1.476  1.00  0.00           C  
HETATM   42  O5  UNL     1       0.123   0.965   0.668  1.00  0.00           O  
HETATM   43  P1  UNL     1      -0.771   1.852  -0.430  1.00  0.00           P  
HETATM   44  O6  UNL     1      -1.947   2.457   0.313  1.00  0.00           O  
HETATM   45  O7  UNL     1       0.169   3.129  -1.010  1.00  0.00           O  
HETATM   46  O8  UNL     1      -1.231   0.878  -1.707  1.00  0.00           O  
HETATM   47  C38 UNL     1      -1.858   1.529  -2.743  1.00  0.00           C  
HETATM   48  C39 UNL     1      -2.223   0.533  -3.841  1.00  0.00           C  
HETATM   49  N1  UNL     1      -2.882   1.147  -4.949  1.00  0.00           N  
HETATM   50  H1  UNL     1      12.605  -3.576   1.517  1.00  0.00           H  
HETATM   51  H2  UNL     1      14.083  -3.188   2.548  1.00  0.00           H  
HETATM   52  H3  UNL     1      12.466  -2.506   2.967  1.00  0.00           H  
HETATM   53  H4  UNL     1      14.419  -1.886   0.703  1.00  0.00           H  
HETATM   54  H5  UNL     1      13.693  -0.703   1.793  1.00  0.00           H  
HETATM   55  H6  UNL     1      12.745  -0.706  -0.575  1.00  0.00           H  
HETATM   56  H7  UNL     1      12.356  -2.420  -0.383  1.00  0.00           H  
HETATM   57  H8  UNL     1      10.774  -2.021   1.383  1.00  0.00           H  
HETATM   58  H9  UNL     1      10.368  -1.162  -0.116  1.00  0.00           H  
HETATM   59  H10 UNL     1      10.106   0.071   2.184  1.00  0.00           H  
HETATM   60  H11 UNL     1      11.827  -0.139   2.351  1.00  0.00           H  
HETATM   61  H12 UNL     1      12.456   1.114   0.458  1.00  0.00           H  
HETATM   62  H13 UNL     1      11.748   2.067   1.731  1.00  0.00           H  
HETATM   63  H14 UNL     1      11.314   2.926  -0.606  1.00  0.00           H  
HETATM   64  H15 UNL     1       9.312   2.652  -1.524  1.00  0.00           H  
HETATM   65  H16 UNL     1       8.272   0.385  -1.293  1.00  0.00           H  
HETATM   66  H17 UNL     1       8.683   0.216   0.417  1.00  0.00           H  
HETATM   67  H18 UNL     1       6.469   0.827   0.239  1.00  0.00           H  
HETATM   68  H19 UNL     1       7.300   2.213   0.963  1.00  0.00           H  
HETATM   69  H20 UNL     1       7.472   3.248  -1.322  1.00  0.00           H  
HETATM   70  H21 UNL     1       6.793   1.784  -2.055  1.00  0.00           H  
HETATM   71  H22 UNL     1       5.209   3.661  -1.890  1.00  0.00           H  
HETATM   72  H23 UNL     1       5.591   3.877  -0.135  1.00  0.00           H  
HETATM   73  H24 UNL     1       4.078   2.093   0.491  1.00  0.00           H  
HETATM   74  H25 UNL     1       3.370   3.237  -0.610  1.00  0.00           H  
HETATM   75  H26 UNL     1       2.537   1.134  -1.140  1.00  0.00           H  
HETATM   76  H27 UNL     1       3.462   1.797  -2.474  1.00  0.00           H  
HETATM   77  H28 UNL     1       5.359   0.098  -1.791  1.00  0.00           H  
HETATM   78  H29 UNL     1       3.929  -0.434  -2.663  1.00  0.00           H  
HETATM   79  H30 UNL     1       3.013  -1.567  -0.717  1.00  0.00           H  
HETATM   80  H31 UNL     1       4.615  -2.037  -1.241  1.00  0.00           H  
HETATM   81  H32 UNL     1       5.598  -1.122   0.952  1.00  0.00           H  
HETATM   82  H33 UNL     1       4.226  -2.248   1.085  1.00  0.00           H  
HETATM   83  H34 UNL     1       2.345   1.253   3.107  1.00  0.00           H  
HETATM   84  H35 UNL     1       1.215  -0.968   3.584  1.00  0.00           H  
HETATM   85  H36 UNL     1       0.105   0.448   3.880  1.00  0.00           H  
HETATM   86  H37 UNL     1      -1.539  -2.183   0.469  1.00  0.00           H  
HETATM   87  H38 UNL     1      -2.458  -3.011   1.738  1.00  0.00           H  
HETATM   88  H39 UNL     1      -2.879  -0.116   0.812  1.00  0.00           H  
HETATM   89  H40 UNL     1      -3.848  -0.895   2.079  1.00  0.00           H  
HETATM   90  H41 UNL     1      -3.555  -1.771  -0.848  1.00  0.00           H  
HETATM   91  H42 UNL     1      -4.494  -2.677   0.365  1.00  0.00           H  
HETATM   92  H43 UNL     1      -5.853  -1.153  -1.078  1.00  0.00           H  
HETATM   93  H44 UNL     1      -4.843   0.219  -0.578  1.00  0.00           H  
HETATM   94  H45 UNL     1      -6.911   0.358   0.603  1.00  0.00           H  
HETATM   95  H46 UNL     1      -5.598   0.076   1.740  1.00  0.00           H  
HETATM   96  H47 UNL     1      -6.232  -2.361   1.868  1.00  0.00           H  
HETATM   97  H48 UNL     1      -7.459  -1.207   2.420  1.00  0.00           H  
HETATM   98  H49 UNL     1      -8.454  -2.959   1.132  1.00  0.00           H  
HETATM   99  H50 UNL     1      -7.440  -2.643  -0.307  1.00  0.00           H  
HETATM  100  H51 UNL     1      -9.642  -1.698  -0.539  1.00  0.00           H  
HETATM  101  H52 UNL     1      -8.451  -0.400  -0.568  1.00  0.00           H  
HETATM  102  H53 UNL     1      -8.979   0.019   1.934  1.00  0.00           H  
HETATM  103  H54 UNL     1     -10.209  -1.261   1.792  1.00  0.00           H  
HETATM  104  H55 UNL     1     -11.127   1.085   1.469  1.00  0.00           H  
HETATM  105  H56 UNL     1      -9.960   1.259   0.104  1.00  0.00           H  
HETATM  106  H57 UNL     1     -12.198   0.965  -0.555  1.00  0.00           H  
HETATM  107  H58 UNL     1     -11.179  -0.409  -1.211  1.00  0.00           H  
HETATM  108  H59 UNL     1     -12.981  -0.442   1.298  1.00  0.00           H  
HETATM  109  H60 UNL     1     -11.892  -1.805   0.843  1.00  0.00           H  
HETATM  110  H61 UNL     1     -13.114  -2.172  -1.299  1.00  0.00           H  
HETATM  111  H62 UNL     1     -14.161  -2.325   0.143  1.00  0.00           H  
HETATM  112  H63 UNL     1     -15.151  -0.138  -0.216  1.00  0.00           H  
HETATM  113  H64 UNL     1     -15.360  -1.308  -1.526  1.00  0.00           H  
HETATM  114  H65 UNL     1     -13.119   0.147  -2.485  1.00  0.00           H  
HETATM  115  H66 UNL     1     -14.148   1.371  -1.620  1.00  0.00           H  
HETATM  116  H67 UNL     1     -14.815   0.390  -2.943  1.00  0.00           H  
HETATM  117  H68 UNL     1       0.414   2.473   2.089  1.00  0.00           H  
HETATM  118  H69 UNL     1       1.708   2.235   0.862  1.00  0.00           H  
HETATM  119  H70 UNL     1       0.442   2.960  -1.959  1.00  0.00           H  
HETATM  120  H71 UNL     1      -1.233   2.343  -3.167  1.00  0.00           H  
HETATM  121  H72 UNL     1      -2.825   1.958  -2.372  1.00  0.00           H  
HETATM  122  H73 UNL     1      -2.832  -0.280  -3.400  1.00  0.00           H  
HETATM  123  H74 UNL     1      -1.254   0.064  -4.152  1.00  0.00           H  
HETATM  124  H75 UNL     1      -3.922   1.088  -4.850  1.00  0.00           H  
HETATM  125  H76 UNL     1      -2.585   0.817  -5.872  1.00  0.00           H  
CONECT    1    2   50   51   52
CONECT    2    3   53   54
CONECT    3    4   55   56
CONECT    4    5   57   58
CONECT    5    6   59   60
CONECT    6    7   61   62
CONECT    7    8    8   63
CONECT    8    9   64
CONECT    9   10   65   66
CONECT   10   11   67   68
CONECT   11   12   69   70
CONECT   12   13   71   72
CONECT   13   14   73   74
CONECT   14   15   75   76
CONECT   15   16   77   78
CONECT   16   17   79   80
CONECT   17   18   81   82
CONECT   18   19   19   20
CONECT   20   21
CONECT   21   22   41   83
CONECT   22   23   84   85
CONECT   23   24
CONECT   24   25   25   26
CONECT   26   27   86   87
CONECT   27   28   88   89
CONECT   28   29   90   91
CONECT   29   30   92   93
CONECT   30   31   94   95
CONECT   31   32   96   97
CONECT   32   33   98   99
CONECT   33   34  100  101
CONECT   34   35  102  103
CONECT   35   36  104  105
CONECT   36   37  106  107
CONECT   37   38  108  109
CONECT   38   39  110  111
CONECT   39   40  112  113
CONECT   40  114  115  116
CONECT   41   42  117  118
CONECT   42   43
CONECT   43   44   44   45   46
CONECT   45  119
CONECT   46   47
CONECT   47   48  120  121
CONECT   48   49  122  123
CONECT   49  124  125
END
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SMILES for HMDB0008926 (PE(16:0/18:1(11Z)))

[H][C@@](COC(=O)CCCCCCCCCCCCCCC)(COP(O)(=O)OCCN)OC(=O)CCCCCCCCC\C=C/CCCCCC
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INCHI for HMDB0008926 (PE(16:0/18:1(11Z)))

InChI=1S/C39H76NO8P/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-39(42)48-37(36-47-49(43,44)46-34-33-40)35-45-38(41)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h13,15,37H,3-12,14,16-36,40H2,1-2H3,(H,43,44)/b15-13-/t37-/m1/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
1-Palmitoyl-2-vaccenoyl-sn-glycero-3-phosphoethanolamineChEBI
GPEtn(16:0/18:1)ChEBI
GPEtn(16:0/18:1n7)ChEBI
GPEtn(16:0/18:1W7)ChEBI
PE(16:0/18:1)ChEBI
Phophatidylethanolamine(16:0/18:1)ChEBI
Phophatidylethanolamine(16:0/18:1n7)ChEBI
Phophatidylethanolamine(16:0/18:1W7)ChEBI
PE(34:1)HMDB
GPEtn(34:1)HMDB
Phophatidylethanolamine(34:1)HMDB
1-Hexadecanoyl-2-(11Z-octadecenoyl)-sn-glycero-3-phosphoethanolamineHMDB
PE(16:0/18:1(11Z))Lipid Annotator
Chemical FormulaC39H76NO8P
Average Molecular Weight718.01
Monoisotopic Molecular Weight717.530855409
IUPAC Name(2-aminoethoxy)[(2R)-3-(hexadecanoyloxy)-2-[(11Z)-octadec-11-enoyloxy]propoxy]phosphinic acid
Traditional Name2-aminoethoxy((2R)-3-(hexadecanoyloxy)-2-[(11Z)-octadec-11-enoyloxy]propoxy)phosphinic acid
CAS Registry NumberNot Available
SMILES
[H][C@@](COC(=O)CCCCCCCCCCCCCCC)(COP(O)(=O)OCCN)OC(=O)CCCCCCCCC\C=C/CCCCCC
InChI Identifier
InChI=1S/C39H76NO8P/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-39(42)48-37(36-47-49(43,44)46-34-33-40)35-45-38(41)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h13,15,37H,3-12,14,16-36,40H2,1-2H3,(H,43,44)/b15-13-/t37-/m1/s1
InChI KeyLYJWNHGFGVVCAO-IEHWZJNJSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phosphatidylethanolamines. These are glycerophosphoetahnolamines in which two fatty acids are bonded to the glycerol moiety through ester linkages.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphoethanolamines
Direct ParentPhosphatidylethanolamines
Alternative Parents
Substituents
  • Diacylglycero-3-phosphoethanolamine
  • Phosphoethanolamine
  • Fatty acid ester
  • Dialkyl phosphate
  • Dicarboxylic acid or derivatives
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Amino acid or derivatives
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Organopnictogen compound
  • Organic oxygen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Primary aliphatic amine
  • Organic nitrogen compound
  • Primary amine
  • Carbonyl group
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effect
Health effect
Disposition
Biological locationSource
Process
Naturally occurring process
Role
Biological roleIndustrial application
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen Locations
  • Feces
Tissue Locations
  • All Tissues
  • Brain
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
FecesDetected but not QuantifiedNot QuantifiedNewborn (0-30 days old)Not Specified
Premature neonates		 details
FecesDetected but not QuantifiedNot QuantifiedNewborn (0-30 days old)Not Specified
Premature neonates		 details
Predicted Concentrations
BiospecimenValueOriginal ageOriginal sexOriginal conditionComments
Blood0.272 +/- 0.157 uMAdult (>18 years old)BothNormal (Most Probable)Calculated using MetaboAnalyst
Blood3.200 +/- 1.229 uMAdult (>18 years old)BothNormal (Upper Limit)Calculated using MetaboAnalyst
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB026116
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound9546726
PDB IDNot Available
ChEBI ID84833
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available

Only showing the first 10 proteins. There are 43 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details
1. Calcium-dependent phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. This isozyme hydrolyzes more efficiently L-alpha-1-palmitoyl-2-oleoyl phosphatidylcholine than L-alpha-1-palmitoyl-2-arachidonyl phosphatidylcholine, L-alpha-1-palmitoyl-2-arachidonyl phosphatidylethanolamine, or L-alpha-1-stearoyl-2-arachidonyl phosphatidylinositol. May be involved in the production of lung surfactant, the remodeling or regulation of cardiac muscle.
Gene Name:
PLA2G5
Uniprot ID:
P39877
Molecular weight:
15674.065
Enzyme Details
2. Group IIF secretory phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Hydrolyzes phosphatidylglycerol versus phosphatidylcholine with a 15-fold preference.
Gene Name:
PLA2G2F
Uniprot ID:
Q9BZM2
Molecular weight:
23256.29
Enzyme Details
3. Cytosolic phospholipase A2
General function:
Involved in metabolic process
Specific function:
Selectively hydrolyzes arachidonyl phospholipids in the sn-2 position releasing arachidonic acid. Together with its lysophospholipid activity, it is implicated in the initiation of the inflammatory response.
Gene Name:
PLA2G4A
Uniprot ID:
P47712
Molecular weight:
85210.19
Enzyme Details
4. Phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides.
Gene Name:
PLA2G1B
Uniprot ID:
P04054
Molecular weight:
16359.535
Enzyme Details
5. Group XIIB secretory phospholipase A2-like protein
General function:
Involved in phospholipase A2 activity
Specific function:
Not known; does not seem to have catalytic activity.
Gene Name:
PLA2G12B
Uniprot ID:
Q9BX93
Molecular weight:
Not Available
Enzyme Details
6. Group 10 secretory phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Has a powerful potency for releasing arachidonic acid from cell membrane phospholipids. Prefers phosphatidylethanolamine and phosphatidylcholine liposomes to those of phosphatidylserine.
Gene Name:
PLA2G10
Uniprot ID:
O15496
Molecular weight:
18153.04
Enzyme Details
7. Group IIE secretory phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Has a preference for arachidonic-containing phospholipids.
Gene Name:
PLA2G2E
Uniprot ID:
Q9NZK7
Molecular weight:
15988.525
Enzyme Details
8. 85/88 kDa calcium-independent phospholipase A2
General function:
Involved in metabolic process
Specific function:
Catalyzes the release of fatty acids from phospholipids. It has been implicated in normal phospholipid remodeling, nitric oxide-induced or vasopressin-induced arachidonic acid release and in leukotriene and prostaglandin production. May participate in fas mediated apoptosis and in regulating transmembrane ion flux in glucose-stimulated B-cells. Has a role in cardiolipin (CL) deacylation. Required for both speed and directionality of monocyte MCP1/CCL2-induced chemotaxis through regulation of F-actin polymerization at the pseudopods. Isoform ankyrin-iPLA2-1 and isoform ankyrin-iPLA2-2, which lack the catalytic domain, are probably involved in the negative regulation of iPLA2 activity.
Gene Name:
PLA2G6
Uniprot ID:
O60733
Molecular weight:
84092.635
Enzyme Details
9. Group IID secretory phospholipase A2
General function:
Involved in phospholipase A2 activity
Specific function:
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. L-alpha-1-palmitoyl-2-linoleoyl phosphatidylethanolamine is more efficiently hydrolyzed than the other phospholipids examined.
Gene Name:
PLA2G2D
Uniprot ID:
Q9UNK4
Molecular weight:
16546.1
Enzyme Details
10. Phospholipase D2
General function:
Involved in protein binding
Specific function:
May have a role in signal-induced cytoskeletal regulation and/or endocytosis (By similarity).
Gene Name:
PLD2
Uniprot ID:
O14939
Molecular weight:
104656.485

Only showing the first 10 proteins. There are 43 proteins in total.

Show all enzymes and transporters