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Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References enzymes (29) Show 29 proteins XML

Record Information

Version

5.0

Status

Detected and Quantified

Creation Date

2008-09-16 13:20:17 UTC

Update Date

2022-07-14 16:57:35 UTC

HMDB ID

HMDB0010403

Secondary Accession Numbers

HMDB10403

Metabolite Identification

Common Name

LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0)

Description

LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)) is a lysophospholipid (LyP). It is a monoglycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. Lysophosphatidylcholines can have different combinations of fatty acids of varying lengths and saturation attached at the C-1 (sn-1) position. Fatty acids containing 16, 18 and 20 carbons are the most common. LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)), in particular, consists of one chain of docosapentaenoic acid at the C-1 position. The docosapentaenoic acid moiety is derived from fish oils. Lysophosphatidylcholine is found in small amounts in most tissues. It is formed by hydrolysis of phosphatidylcholine by the enzyme phospholipase A2, as part of the de-acylation/re-acylation cycle that controls its overall molecular species composition. It can also be formed inadvertently during extraction of lipids from tissues if the phospholipase is activated by careless handling. In blood plasma significant amounts of lysophosphatidylcholine are formed by a specific enzyme system, lecithin:cholesterol acyltransferase (LCAT), which is secreted from the liver. The enzyme catalyzes the transfer of the fatty acids of position sn-2 of phosphatidylcholine to the free cholesterol in plasma, with formation of cholesterol esters and lysophosphatidylcholine. Lysophospholipids have a role in lipid signaling by acting on lysophospholipid receptors (LPL-R). LPL-R's are members of the G protein-coupled receptor family of integral membrane proteins. LPL-R's are members of the G protein-coupled receptor (GPR) family of integral membrane proteins. Lysophosphatidylcholines (LPCs) specifically bind to GPR119, GPR40, GPR55 and GPR4. binding of LPCs to GPR119, GPR40 and GPR55 induces intracellular calcium mobilization and leads to increased glucose-stimulated insulin secretion in different cell systems. In blood or plasma LPCs are bound mainly to albumin and to a lesser extent to lipoproteins. Inflammation, cell damage and other pathophysiological conditions can profoundly alter the ratio of free to albumin bound LPC through increased production of LPC or decreased plasma levels of albumin (PMID: 32599910 ). In particular, lower levels of albumin (hypoalbuminemia) lead to lower levels of LPC in the blood. Hypoalbuminemia with albumin concentrations of <20 g/L are typical of patients with sepsis, burns or serious trauma (PMID: 26557421 ). Such low levels of albumin often lead to LPC levels that are 50-80 % lower than that seen in healthy individuals (PMID: 27501420 ). Decreased levels of LPC have been observed in a number of other inflammatory conditions beyond sepsis, including rheumatoid arthritis, diabetes, schizophrenia, polycystic ovary syndrome, Alzheimer’s disease, pulmonary arterial hypertension, aging, asthma and liver cirrhosis, where they were associated with increased mortality risk (PMID: 32599910 ). LPCs have a number of protective or anti-inflammatory effects. Higher levels of LPC induce cyclooxygenase-2 and endothelial nitric oxide synthase (eNOS) expression in endothelial cells, both of which can have vasoprotective effects either via production of prostacyclin or nitric oxide (PMID: 32599910 ). LPCs have been shown to elicit a number of effects on the innate immune system and effectively serve as dual-activity ligand molecules. In particular, LPCs directly activate toll-like receptor (TLR) 4 and TLR-2-1 receptors in the absence of classical TLR ligands. However, LPCs can also inhibit TLR-mediated signaling in the presence of classical TLR ligands, thereby acting as anti-inflammatory molecules (PMID: 32599910 ). Low levels of LPC during a bacterial or viral infection with TLR-mediated signalling can lead to opposing (inflammatory vs. anti-inflammatory) effects and immune dysregulation.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652304202020542D          

 40 39  0  0  1  0            999 V2000
   25.3991   -8.5351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.6939   -8.9422    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   23.9887   -8.5351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.1043   -8.9422    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.2836   -8.9422    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.9388   -9.6306    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   26.8095   -8.5351    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   27.2166   -9.2403    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   26.4023   -7.8299    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   27.5146   -8.1279    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   28.2198   -8.5350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.9249   -8.1278    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.6302   -8.5349    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   30.3354   -8.9420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.2231   -9.2401    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.0373   -7.8298    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.5268   -9.6788    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5651   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2795   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9940   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7085   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4230   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1375   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8519   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5664   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2809   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9954   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7098   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4244   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1388   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8533   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5678   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2822   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9967   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7112   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.4257   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.1402   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.8546   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.5691   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.5691   -7.7047    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  1  4  1  0  0  0  0
  3  5  1  0  0  0  0
  2  6  1  6  0  0  0
  4  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  7 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
  2 17  1  1  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39  5  1  0  0  0  0
 39 40  2  0  0  0  0
M  CHG  2   8  -1  13   1
M  END

HMDB0010403
     RDKit          3D
LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0)
 91 90  0  0  0  0  0  0  0  0999 V2000
  -10.6280   -0.5739   -1.8645 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7914   -0.2197   -0.3705 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2270   -1.4384    0.3009 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5549   -2.0090    1.2727 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2680   -1.4966    1.8206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2391   -2.5187    1.6292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1285   -2.4129    0.9415 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8109   -1.1123    0.2374 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6942   -1.4339   -1.1911 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6312   -1.1795   -1.8726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4107   -0.5484   -1.3946 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1168    0.5926   -2.2593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9842    1.8313   -1.9825 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0831    2.5232   -0.7273 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4569    1.8125    0.4864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6577    1.7011    1.5278 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3124    2.2563    1.6239 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2567    1.1843    1.8520 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0929    1.8558    1.9611 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5084    2.6178    0.7477 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6135    1.8269   -0.5098 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6352    0.7294   -0.4238 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2616    0.5654    0.6302 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8776   -0.0812   -1.4892 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7678   -1.1126   -1.6123 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2189   -0.8012   -1.6115 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6270    0.0668   -2.6404 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8173   -0.3889   -0.3152 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2407   -0.5111   -0.4198 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8764   -0.0345    1.0801 P   0  0  0  0  0  5  0  0  0  0  0  0
    6.3756   -1.0259    2.1076 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2670    1.4751    1.4911 O   0  0  0  0  0  1  0  0  0  0  0  0
    8.5416   -0.0334    1.1266 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0656   -1.3175    1.0780 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5657   -1.2319    1.1350 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1575   -0.4892    0.0635 N   0  0  0  0  0  4  0  0  0  0  0  0
   10.6182    0.8486   -0.0660 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1009   -1.1809   -1.2068 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5815   -0.3250    0.3996 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0714    0.2696   -2.3226 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6035   -0.6958   -2.3409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9805   -1.4694   -1.9579 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5855    0.5682   -0.3608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8137    0.1913   -0.0884 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1799   -1.8804   -0.0507 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9782   -2.9441    1.7175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4857   -1.4523    2.9609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0664   -0.4886    1.5299 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4196   -3.4875    2.1195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4226   -3.2372    0.8611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4885   -0.3020    0.4906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8221   -0.8240    0.6928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5780   -1.9203   -1.6898 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6426   -1.4744   -2.9435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5769   -1.3176   -1.6602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2653   -0.4248   -0.3314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0005    0.2598   -3.3552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7467    2.5014   -2.8947 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2043    3.2132   -0.5570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9259    3.3242   -0.8480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4971    1.3738    0.5629 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0661    1.1261    2.4007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9921    2.9655    0.8701 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2958    2.8543    2.5970 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2744    0.4085    1.0853 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4248    0.6708    2.8286 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8618    1.1528    2.2930 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0308    2.6197    2.7987 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5414    3.0335    0.9960 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0953    3.5468    0.5927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3673    1.3503   -0.7294 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9201    2.5060   -1.3293 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4949   -1.6732   -2.5659 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5780   -1.8560   -0.7535 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7566   -1.7804   -1.8994 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0214    0.8408   -2.6273 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4908   -0.9598    0.5375 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6854    0.7265   -0.1932 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7568   -1.8104    0.1398 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7433   -1.8928    1.9708 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.8335   -0.7336    2.0919 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0120   -2.2342    1.1593 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4570    1.2807    0.9294 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3803    1.4932   -0.5704 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7226    0.8785   -0.6895 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8414   -0.7382   -1.9021 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3434   -2.2466   -1.0332 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0801   -1.1199   -1.6187 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.9853   -1.2956    0.7009 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.6267    0.3576    1.2781 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1483    0.1070   -0.4479 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  2  0
 30 32  1  0
 30 33  1  0
 33 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  1  0
 36 38  1  0
 36 39  1  0
  1 40  1  0
  1 41  1  0
  1 42  1  0
  2 43  1  0
  2 44  1  0
  3 45  1  0
  4 46  1  0
  5 47  1  0
  5 48  1  0
  6 49  1  0
  7 50  1  0
  8 51  1  0
  8 52  1  0
  9 53  1  0
 10 54  1  0
 11 55  1  0
 11 56  1  0
 12 57  1  0
 13 58  1  0
 14 59  1  0
 14 60  1  0
 15 61  1  0
 16 62  1  0
 17 63  1  0
 17 64  1  0
 18 65  1  0
 18 66  1  0
 19 67  1  0
 19 68  1  0
 20 69  1  0
 20 70  1  0
 21 71  1  0
 21 72  1  0
 25 73  1  0
 25 74  1  0
 26 75  1  6
 27 76  1  0
 28 77  1  0
 28 78  1  0
 34 79  1  0
 34 80  1  0
 35 81  1  0
 35 82  1  0
 37 83  1  0
 37 84  1  0
 37 85  1  0
 38 86  1  0
 38 87  1  0
 38 88  1  0
 39 89  1  0
 39 90  1  0
 39 91  1  0
M  CHG  2  32  -1  36   1
M  END


  Mrv1652304202020542D          

 40 39  0  0  1  0            999 V2000
   25.3991   -8.5351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.6939   -8.9422    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   23.9887   -8.5351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.1043   -8.9422    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.2836   -8.9422    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.9388   -9.6306    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   26.8095   -8.5351    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   27.2166   -9.2403    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   26.4023   -7.8299    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   27.5146   -8.1279    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   28.2198   -8.5350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.9249   -8.1278    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.6302   -8.5349    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   30.3354   -8.9420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.2231   -9.2401    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.0373   -7.8298    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.5268   -9.6788    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5651   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2795   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9940   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7085   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4230   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1375   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8519   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5664   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2809   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9954   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7098   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4244   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1388   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8533   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5678   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2822   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9967   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7112   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.4257   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.1402   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.8546   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.5691   -8.5297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.5691   -7.7047    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  1  4  1  0  0  0  0
  3  5  1  0  0  0  0
  2  6  1  6  0  0  0
  4  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  7 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
  2 17  1  1  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39  5  1  0  0  0  0
 39 40  2  0  0  0  0
M  CHG  2   8  -1  13   1
M  END
> <DATABASE_ID>
HMDB0010403

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@](O)(COC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC)COP([O-])(=O)OCC[N+](C)(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C30H52NO7P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-30(33)36-27-29(32)28-38-39(34,35)37-26-25-31(2,3)4/h6-7,9-10,12-13,15-16,18-19,29,32H,5,8,11,14,17,20-28H2,1-4H3/b7-6-,10-9-,13-12-,16-15-,19-18-/t29-/m1/s1

> <INCHI_KEY>
BIEOSECQPGGZMF-NAIWXXGBSA-N

> <FORMULA>
C30H52NO7P

> <MOLECULAR_WEIGHT>
569.7101

> <EXACT_MASS>
569.348139535

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
91

> <JCHEM_AVERAGE_POLARIZABILITY>
64.01463100543654

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[(2R)-3-[(7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoyloxy]-2-hydroxypropyl phosphono]oxy}ethyl)trimethylazanium

> <ALOGPS_LOGP>
2.77

> <JCHEM_LOGP>
2.050546183528256

> <ALOGPS_LOGS>
-6.46

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.655609236411607

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8553406136270878

> <JCHEM_PKA_STRONGEST_BASIC>
-3.404003370784481

> <JCHEM_POLAR_SURFACE_AREA>
105.12

> <JCHEM_REFRACTIVITY>
175.46270000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
25

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.15e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2-{[(2R)-3-[(7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoyloxy]-2-hydroxypropyl phosphono]oxy}ethyl)trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0010403
     RDKit          3D
LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0)
 91 90  0  0  0  0  0  0  0  0999 V2000
  -10.6280   -0.5739   -1.8645 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7914   -0.2197   -0.3705 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2270   -1.4384    0.3009 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5549   -2.0090    1.2727 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2680   -1.4966    1.8206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2391   -2.5187    1.6292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1285   -2.4129    0.9415 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8109   -1.1123    0.2374 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6942   -1.4339   -1.1911 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6312   -1.1795   -1.8726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4107   -0.5484   -1.3946 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1168    0.5926   -2.2593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9842    1.8313   -1.9825 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0831    2.5232   -0.7273 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4569    1.8125    0.4864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6577    1.7011    1.5278 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3124    2.2563    1.6239 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2567    1.1843    1.8520 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0929    1.8558    1.9611 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5084    2.6178    0.7477 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6135    1.8269   -0.5098 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6352    0.7294   -0.4238 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2616    0.5654    0.6302 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8776   -0.0812   -1.4892 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7678   -1.1126   -1.6123 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2189   -0.8012   -1.6115 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6270    0.0668   -2.6404 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8173   -0.3889   -0.3152 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2407   -0.5111   -0.4198 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8764   -0.0345    1.0801 P   0  0  0  0  0  5  0  0  0  0  0  0
    6.3756   -1.0259    2.1076 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2670    1.4751    1.4911 O   0  0  0  0  0  1  0  0  0  0  0  0
    8.5416   -0.0334    1.1266 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0656   -1.3175    1.0780 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5657   -1.2319    1.1350 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1575   -0.4892    0.0635 N   0  0  0  0  0  4  0  0  0  0  0  0
   10.6182    0.8486   -0.0660 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1009   -1.1809   -1.2068 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5815   -0.3250    0.3996 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0714    0.2696   -2.3226 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6035   -0.6958   -2.3409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9805   -1.4694   -1.9579 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5855    0.5682   -0.3608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8137    0.1913   -0.0884 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1799   -1.8804   -0.0507 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9782   -2.9441    1.7175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4857   -1.4523    2.9609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0664   -0.4886    1.5299 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4196   -3.4875    2.1195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4226   -3.2372    0.8611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4885   -0.3020    0.4906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8221   -0.8240    0.6928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5780   -1.9203   -1.6898 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6426   -1.4744   -2.9435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5769   -1.3176   -1.6602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2653   -0.4248   -0.3314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0005    0.2598   -3.3552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7467    2.5014   -2.8947 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2043    3.2132   -0.5570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9259    3.3242   -0.8480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4971    1.3738    0.5629 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0661    1.1261    2.4007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9921    2.9655    0.8701 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2958    2.8543    2.5970 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2744    0.4085    1.0853 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4248    0.6708    2.8286 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8618    1.1528    2.2930 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0308    2.6197    2.7987 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5414    3.0335    0.9960 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0953    3.5468    0.5927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3673    1.3503   -0.7294 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9201    2.5060   -1.3293 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4949   -1.6732   -2.5659 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5780   -1.8560   -0.7535 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7566   -1.7804   -1.8994 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0214    0.8408   -2.6273 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4908   -0.9598    0.5375 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6854    0.7265   -0.1932 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7568   -1.8104    0.1398 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7433   -1.8928    1.9708 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.8335   -0.7336    2.0919 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0120   -2.2342    1.1593 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4570    1.2807    0.9294 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3803    1.4932   -0.5704 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7226    0.8785   -0.6895 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8414   -0.7382   -1.9021 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3434   -2.2466   -1.0332 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0801   -1.1199   -1.6187 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.9853   -1.2956    0.7009 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.6267    0.3576    1.2781 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1483    0.1070   -0.4479 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  2  0
 30 32  1  0
 30 33  1  0
 33 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  1  0
 36 38  1  0
 36 39  1  0
  1 40  1  0
  1 41  1  0
  1 42  1  0
  2 43  1  0
  2 44  1  0
  3 45  1  0
  4 46  1  0
  5 47  1  0
  5 48  1  0
  6 49  1  0
  7 50  1  0
  8 51  1  0
  8 52  1  0
  9 53  1  0
 10 54  1  0
 11 55  1  0
 11 56  1  0
 12 57  1  0
 13 58  1  0
 14 59  1  0
 14 60  1  0
 15 61  1  0
 16 62  1  0
 17 63  1  0
 17 64  1  0
 18 65  1  0
 18 66  1  0
 19 67  1  0
 19 68  1  0
 20 69  1  0
 20 70  1  0
 21 71  1  0
 21 72  1  0
 25 73  1  0
 25 74  1  0
 26 75  1  6
 27 76  1  0
 28 77  1  0
 28 78  1  0
 34 79  1  0
 34 80  1  0
 35 81  1  0
 35 82  1  0
 37 83  1  0
 37 84  1  0
 37 85  1  0
 38 86  1  0
 38 87  1  0
 38 88  1  0
 39 89  1  0
 39 90  1  0
 39 91  1  0
M  CHG  2  32  -1  36   1
M  END

HEADER    PROTEIN                                 20-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-APR-20         0                                  
HETATM    1  C   UNK     0      47.412 -15.932   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      46.095 -16.692   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      44.779 -15.932   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      48.728 -16.692   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      43.463 -16.692   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      44.686 -17.977   0.000  0.00  0.00           O+0
HETATM    7  P   UNK     0      50.044 -15.932   0.000  0.00  0.00           P+0
HETATM    8  O   UNK     0      50.804 -17.249   0.000  0.00  0.00           O-1
HETATM    9  O   UNK     0      49.284 -14.616   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      51.361 -15.172   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      52.677 -15.932   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      53.993 -15.172   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0      55.310 -15.932   0.000  0.00  0.00           N+1
HETATM   14  C   UNK     0      56.626 -16.692   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      54.550 -17.248   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      56.070 -14.616   0.000  0.00  0.00           C+0
HETATM   17  H   UNK     0      47.650 -18.067   0.000  0.00  0.00           H+0
HETATM   18  C   UNK     0      14.122 -15.922   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      15.455 -16.692   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      16.789 -15.922   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      18.123 -15.922   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      19.456 -16.692   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      20.790 -15.922   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      22.124 -15.922   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      23.457 -16.692   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      24.791 -15.922   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      26.125 -15.922   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      27.458 -16.692   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      28.792 -15.922   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      30.126 -15.922   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      31.459 -16.692   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      32.793 -15.922   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      34.127 -15.922   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      35.461 -16.692   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      36.794 -15.922   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      38.128 -16.692   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      39.462 -15.922   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      40.795 -16.692   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      42.129 -15.922   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      42.129 -14.382   0.000  0.00  0.00           O+0
CONECT    1    2    4                                                       
CONECT    2    1    3    6   17                                             
CONECT    3    2    5                                                       
CONECT    4    1    7                                                       
CONECT    5    3   39                                                       
CONECT    6    2                                                            
CONECT    7    4    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15   16                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   13                                                            
CONECT   17    2                                                            
CONECT   18   19                                                            
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38    5   40                                                  
CONECT   40   39                                                            
MASTER        0    0    0    0    0    0    0    0   40    0   78    0
END

COMPND    HMDB0010403
HETATM    1  C1  UNL     1     -10.628  -0.574  -1.865  1.00  0.00           C  
HETATM    2  C2  UNL     1     -10.791  -0.220  -0.370  1.00  0.00           C  
HETATM    3  C3  UNL     1     -11.227  -1.438   0.301  1.00  0.00           C  
HETATM    4  C4  UNL     1     -10.555  -2.009   1.273  1.00  0.00           C  
HETATM    5  C5  UNL     1      -9.268  -1.497   1.821  1.00  0.00           C  
HETATM    6  C6  UNL     1      -8.239  -2.519   1.629  1.00  0.00           C  
HETATM    7  C7  UNL     1      -7.129  -2.413   0.942  1.00  0.00           C  
HETATM    8  C8  UNL     1      -6.811  -1.112   0.237  1.00  0.00           C  
HETATM    9  C9  UNL     1      -6.694  -1.434  -1.191  1.00  0.00           C  
HETATM   10  C10 UNL     1      -5.631  -1.179  -1.873  1.00  0.00           C  
HETATM   11  C11 UNL     1      -4.411  -0.548  -1.395  1.00  0.00           C  
HETATM   12  C12 UNL     1      -4.117   0.593  -2.259  1.00  0.00           C  
HETATM   13  C13 UNL     1      -3.984   1.831  -1.983  1.00  0.00           C  
HETATM   14  C14 UNL     1      -4.083   2.523  -0.727  1.00  0.00           C  
HETATM   15  C15 UNL     1      -4.457   1.812   0.486  1.00  0.00           C  
HETATM   16  C16 UNL     1      -3.658   1.701   1.528  1.00  0.00           C  
HETATM   17  C17 UNL     1      -2.312   2.256   1.624  1.00  0.00           C  
HETATM   18  C18 UNL     1      -1.257   1.184   1.852  1.00  0.00           C  
HETATM   19  C19 UNL     1       0.093   1.856   1.961  1.00  0.00           C  
HETATM   20  C20 UNL     1       0.508   2.618   0.748  1.00  0.00           C  
HETATM   21  C21 UNL     1       0.613   1.827  -0.510  1.00  0.00           C  
HETATM   22  C22 UNL     1       1.635   0.729  -0.424  1.00  0.00           C  
HETATM   23  O1  UNL     1       2.262   0.565   0.630  1.00  0.00           O  
HETATM   24  O2  UNL     1       1.878  -0.081  -1.489  1.00  0.00           O  
HETATM   25  C23 UNL     1       2.768  -1.113  -1.612  1.00  0.00           C  
HETATM   26  C24 UNL     1       4.219  -0.801  -1.611  1.00  0.00           C  
HETATM   27  O3  UNL     1       4.627   0.067  -2.640  1.00  0.00           O  
HETATM   28  C25 UNL     1       4.817  -0.389  -0.315  1.00  0.00           C  
HETATM   29  O4  UNL     1       6.241  -0.511  -0.420  1.00  0.00           O  
HETATM   30  P1  UNL     1       6.876  -0.034   1.080  1.00  0.00           P  
HETATM   31  O5  UNL     1       6.376  -1.026   2.108  1.00  0.00           O  
HETATM   32  O6  UNL     1       6.267   1.475   1.491  1.00  0.00           O1-
HETATM   33  O7  UNL     1       8.542  -0.033   1.127  1.00  0.00           O  
HETATM   34  C26 UNL     1       9.066  -1.318   1.078  1.00  0.00           C  
HETATM   35  C27 UNL     1      10.566  -1.232   1.135  1.00  0.00           C  
HETATM   36  N1  UNL     1      11.158  -0.489   0.064  1.00  0.00           N1+
HETATM   37  C28 UNL     1      10.618   0.849  -0.066  1.00  0.00           C  
HETATM   38  C29 UNL     1      11.101  -1.181  -1.207  1.00  0.00           C  
HETATM   39  C30 UNL     1      12.581  -0.325   0.400  1.00  0.00           C  
HETATM   40  H1  UNL     1     -10.071   0.270  -2.323  1.00  0.00           H  
HETATM   41  H2  UNL     1     -11.603  -0.696  -2.341  1.00  0.00           H  
HETATM   42  H3  UNL     1      -9.981  -1.469  -1.958  1.00  0.00           H  
HETATM   43  H4  UNL     1     -11.586   0.568  -0.361  1.00  0.00           H  
HETATM   44  H5  UNL     1      -9.814   0.191  -0.088  1.00  0.00           H  
HETATM   45  H6  UNL     1     -12.180  -1.880  -0.051  1.00  0.00           H  
HETATM   46  H7  UNL     1     -10.978  -2.944   1.717  1.00  0.00           H  
HETATM   47  H8  UNL     1      -9.486  -1.452   2.961  1.00  0.00           H  
HETATM   48  H9  UNL     1      -9.066  -0.489   1.530  1.00  0.00           H  
HETATM   49  H10 UNL     1      -8.420  -3.487   2.119  1.00  0.00           H  
HETATM   50  H11 UNL     1      -6.423  -3.237   0.861  1.00  0.00           H  
HETATM   51  H12 UNL     1      -7.489  -0.302   0.491  1.00  0.00           H  
HETATM   52  H13 UNL     1      -5.822  -0.824   0.693  1.00  0.00           H  
HETATM   53  H14 UNL     1      -7.578  -1.920  -1.690  1.00  0.00           H  
HETATM   54  H15 UNL     1      -5.643  -1.474  -2.943  1.00  0.00           H  
HETATM   55  H16 UNL     1      -3.577  -1.318  -1.660  1.00  0.00           H  
HETATM   56  H17 UNL     1      -4.265  -0.425  -0.331  1.00  0.00           H  
HETATM   57  H18 UNL     1      -4.000   0.260  -3.355  1.00  0.00           H  
HETATM   58  H19 UNL     1      -3.747   2.501  -2.895  1.00  0.00           H  
HETATM   59  H20 UNL     1      -3.204   3.213  -0.557  1.00  0.00           H  
HETATM   60  H21 UNL     1      -4.926   3.324  -0.848  1.00  0.00           H  
HETATM   61  H22 UNL     1      -5.497   1.374   0.563  1.00  0.00           H  
HETATM   62  H23 UNL     1      -4.066   1.126   2.401  1.00  0.00           H  
HETATM   63  H24 UNL     1      -1.992   2.966   0.870  1.00  0.00           H  
HETATM   64  H25 UNL     1      -2.296   2.854   2.597  1.00  0.00           H  
HETATM   65  H26 UNL     1      -1.274   0.408   1.085  1.00  0.00           H  
HETATM   66  H27 UNL     1      -1.425   0.671   2.829  1.00  0.00           H  
HETATM   67  H28 UNL     1       0.862   1.153   2.293  1.00  0.00           H  
HETATM   68  H29 UNL     1       0.031   2.620   2.799  1.00  0.00           H  
HETATM   69  H30 UNL     1       1.541   3.033   0.996  1.00  0.00           H  
HETATM   70  H31 UNL     1      -0.095   3.547   0.593  1.00  0.00           H  
HETATM   71  H32 UNL     1      -0.367   1.350  -0.729  1.00  0.00           H  
HETATM   72  H33 UNL     1       0.920   2.506  -1.329  1.00  0.00           H  
HETATM   73  H34 UNL     1       2.495  -1.673  -2.566  1.00  0.00           H  
HETATM   74  H35 UNL     1       2.578  -1.856  -0.753  1.00  0.00           H  
HETATM   75  H36 UNL     1       4.757  -1.780  -1.899  1.00  0.00           H  
HETATM   76  H37 UNL     1       4.021   0.841  -2.627  1.00  0.00           H  
HETATM   77  H38 UNL     1       4.491  -0.960   0.538  1.00  0.00           H  
HETATM   78  H39 UNL     1       4.685   0.726  -0.193  1.00  0.00           H  
HETATM   79  H40 UNL     1       8.757  -1.810   0.140  1.00  0.00           H  
HETATM   80  H41 UNL     1       8.743  -1.893   1.971  1.00  0.00           H  
HETATM   81  H42 UNL     1      10.834  -0.734   2.092  1.00  0.00           H  
HETATM   82  H43 UNL     1      11.012  -2.234   1.159  1.00  0.00           H  
HETATM   83  H44 UNL     1      10.457   1.281   0.929  1.00  0.00           H  
HETATM   84  H45 UNL     1      11.380   1.493  -0.570  1.00  0.00           H  
HETATM   85  H46 UNL     1       9.723   0.879  -0.689  1.00  0.00           H  
HETATM   86  H47 UNL     1      11.841  -0.738  -1.902  1.00  0.00           H  
HETATM   87  H48 UNL     1      11.343  -2.247  -1.033  1.00  0.00           H  
HETATM   88  H49 UNL     1      10.080  -1.120  -1.619  1.00  0.00           H  
HETATM   89  H50 UNL     1      12.985  -1.296   0.701  1.00  0.00           H  
HETATM   90  H51 UNL     1      12.627   0.358   1.278  1.00  0.00           H  
HETATM   91  H52 UNL     1      13.148   0.107  -0.448  1.00  0.00           H  
CONECT    1    2   40   41   42
CONECT    2    3   43   44
CONECT    3    4    4   45
CONECT    4    5   46
CONECT    5    6   47   48
CONECT    6    7    7   49
CONECT    7    8   50
CONECT    8    9   51   52
CONECT    9   10   10   53
CONECT   10   11   54
CONECT   11   12   55   56
CONECT   12   13   13   57
CONECT   13   14   58
CONECT   14   15   59   60
CONECT   15   16   16   61
CONECT   16   17   62
CONECT   17   18   63   64
CONECT   18   19   65   66
CONECT   19   20   67   68
CONECT   20   21   69   70
CONECT   21   22   71   72
CONECT   22   23   23   24
CONECT   24   25
CONECT   25   26   73   74
CONECT   26   27   28   75
CONECT   27   76
CONECT   28   29   77   78
CONECT   29   30
CONECT   30   31   31   32   33
CONECT   33   34
CONECT   34   35   79   80
CONECT   35   36   81   82
CONECT   36   37   38   39
CONECT   37   83   84   85
CONECT   38   86   87   88
CONECT   39   89   90   91
END

HMDB0010403
     RDKit          3D
LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0)
 91 90  0  0  0  0  0  0  0  0999 V2000
  -10.6280   -0.5739   -1.8645 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7914   -0.2197   -0.3705 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2270   -1.4384    0.3009 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5549   -2.0090    1.2727 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2680   -1.4966    1.8206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2391   -2.5187    1.6292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1285   -2.4129    0.9415 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8109   -1.1123    0.2374 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6942   -1.4339   -1.1911 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6312   -1.1795   -1.8726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4107   -0.5484   -1.3946 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1168    0.5926   -2.2593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9842    1.8313   -1.9825 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0831    2.5232   -0.7273 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4569    1.8125    0.4864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6577    1.7011    1.5278 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3124    2.2563    1.6239 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2567    1.1843    1.8520 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0929    1.8558    1.9611 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5084    2.6178    0.7477 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6135    1.8269   -0.5098 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6352    0.7294   -0.4238 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2616    0.5654    0.6302 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8776   -0.0812   -1.4892 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7678   -1.1126   -1.6123 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2189   -0.8012   -1.6115 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6270    0.0668   -2.6404 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8173   -0.3889   -0.3152 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2407   -0.5111   -0.4198 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8764   -0.0345    1.0801 P   0  0  0  0  0  5  0  0  0  0  0  0
    6.3756   -1.0259    2.1076 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2670    1.4751    1.4911 O   0  0  0  0  0  1  0  0  0  0  0  0
    8.5416   -0.0334    1.1266 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0656   -1.3175    1.0780 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5657   -1.2319    1.1350 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1575   -0.4892    0.0635 N   0  0  0  0  0  4  0  0  0  0  0  0
   10.6182    0.8486   -0.0660 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1009   -1.1809   -1.2068 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5815   -0.3250    0.3996 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0714    0.2696   -2.3226 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6035   -0.6958   -2.3409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9805   -1.4694   -1.9579 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5855    0.5682   -0.3608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8137    0.1913   -0.0884 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1799   -1.8804   -0.0507 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9782   -2.9441    1.7175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4857   -1.4523    2.9609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0664   -0.4886    1.5299 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4196   -3.4875    2.1195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4226   -3.2372    0.8611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4885   -0.3020    0.4906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8221   -0.8240    0.6928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5780   -1.9203   -1.6898 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6426   -1.4744   -2.9435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5769   -1.3176   -1.6602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2653   -0.4248   -0.3314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0005    0.2598   -3.3552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7467    2.5014   -2.8947 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2043    3.2132   -0.5570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9259    3.3242   -0.8480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4971    1.3738    0.5629 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0661    1.1261    2.4007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9921    2.9655    0.8701 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2958    2.8543    2.5970 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2744    0.4085    1.0853 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4248    0.6708    2.8286 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8618    1.1528    2.2930 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0308    2.6197    2.7987 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5414    3.0335    0.9960 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0953    3.5468    0.5927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3673    1.3503   -0.7294 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9201    2.5060   -1.3293 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4949   -1.6732   -2.5659 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5780   -1.8560   -0.7535 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7566   -1.7804   -1.8994 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0214    0.8408   -2.6273 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4908   -0.9598    0.5375 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6854    0.7265   -0.1932 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7568   -1.8104    0.1398 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7433   -1.8928    1.9708 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.8335   -0.7336    2.0919 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0120   -2.2342    1.1593 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4570    1.2807    0.9294 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3803    1.4932   -0.5704 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7226    0.8785   -0.6895 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8414   -0.7382   -1.9021 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3434   -2.2466   -1.0332 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0801   -1.1199   -1.6187 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.9853   -1.2956    0.7009 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.6267    0.3576    1.2781 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1483    0.1070   -0.4479 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  2  0
 30 32  1  0
 30 33  1  0
 33 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  1  0
 36 38  1  0
 36 39  1  0
  1 40  1  0
  1 41  1  0
  1 42  1  0
  2 43  1  0
  2 44  1  0
  3 45  1  0
  4 46  1  0
  5 47  1  0
  5 48  1  0
  6 49  1  0
  7 50  1  0
  8 51  1  0
  8 52  1  0
  9 53  1  0
 10 54  1  0
 11 55  1  0
 11 56  1  0
 12 57  1  0
 13 58  1  0
 14 59  1  0
 14 60  1  0
 15 61  1  0
 16 62  1  0
 17 63  1  0
 17 64  1  0
 18 65  1  0
 18 66  1  0
 19 67  1  0
 19 68  1  0
 20 69  1  0
 20 70  1  0
 21 71  1  0
 21 72  1  0
 25 73  1  0
 25 74  1  0
 26 75  1  6
 27 76  1  0
 28 77  1  0
 28 78  1  0
 34 79  1  0
 34 80  1  0
 35 81  1  0
 35 82  1  0
 37 83  1  0
 37 84  1  0
 37 85  1  0
 38 86  1  0
 38 87  1  0
 38 88  1  0
 39 89  1  0
 39 90  1  0
 39 91  1  0
M  CHG  2  32  -1  36   1
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
1-Docosapentaenoyl-glycero-3-phosphocholine	ChEBI
1-Docosapentaenoyl-GPC	ChEBI
1-Docosapentaenoyl-GPC (22:5n3)	ChEBI
GPC(22:5n3)	ChEBI
LPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0)	ChEBI
LPC(22:5)	ChEBI
LPC(22:5/0:0)	ChEBI
LPC(22:5n3/0:0)	ChEBI
LPC(22:5W3/0:0)	ChEBI
LyPC(22:5)	ChEBI
LyPC(22:5/0:0)	ChEBI
LyPC(22:5n3/0:0)	ChEBI
LyPC(22:5W3/0:0)	ChEBI
LysoPC(22:5)	ChEBI
LysoPC(22:5/0:0)	ChEBI
LysoPC(22:5n3/0:0)	ChEBI
LysoPC(22:5W3/0:0)	ChEBI
Lysophosphatidylcholine(22:5(7Z,10Z,13Z,16Z,19Z)/0:0)	ChEBI
Lysophosphatidylcholine(22:5)	ChEBI
Lysophosphatidylcholine(22:5/0:0)	ChEBI
Lysophosphatidylcholine(22:5n3/0:0)	ChEBI
Lysophosphatidylcholine(22:5W3/0:0)	ChEBI
PC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0)	ChEBI
PC(22:5/0:0)	ChEBI
PC(22:5n3)	ChEBI
LysoPC(22:5(7Z,10Z,13Z,16Z,19Z))	HMDB
1-(7Z,10Z,13Z,16Z,19Z-Docosapentaenoyl)-glycero-3-phosphocholine	HMDB
1-Docosapentaenoylglycerophosphocholine	HMDB

Chemical Formula

C₃₀H₅₂NO₇P

Average Molecular Weight

569.7101

Monoisotopic Molecular Weight

569.348139535

IUPAC Name

(2-{[(2R)-3-[(7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoyloxy]-2-hydroxypropyl phosphono]oxy}ethyl)trimethylazanium

Traditional Name

(2-{[(2R)-3-[(7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoyloxy]-2-hydroxypropyl phosphono]oxy}ethyl)trimethylazanium

CAS Registry Number

Not Available

SMILES

CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCCCC(=O)OC[C@](O)([H])COP([O-])(=O)OCC[N+](C)(C)C

InChI Identifier

InChI=1S/C30H52NO7P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-30(33)36-27-29(32)28-38-39(34,35)37-26-25-31(2,3)4/h6-7,9-10,12-13,15-16,18-19,29,32H,5,8,11,14,17,20-28H2,1-4H3/b7-6-,10-9-,13-12-,16-15-,19-18-/t29-/m1/s1

InChI Key

BIEOSECQPGGZMF-NAIWXXGBSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 1-acyl-sn-glycero-3-phosphocholines. These are glycerophosphocholines in which the glycerol is esterified with a fatty acid at O-1 position, and linked at position 3 to a phosphocholine.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

Glycerophosphocholines

Direct Parent

1-acyl-sn-glycero-3-phosphocholines

Alternative Parents

Substituents

1-acyl-sn-glycero-3-phosphocholine
Phosphocholine
Fatty acid ester
Dialkyl phosphate
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Fatty acyl
Tetraalkylammonium salt
Quaternary ammonium salt
Secondary alcohol
Carboxylic acid ester
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Organic oxide
Organooxygen compound
Organonitrogen compound
Organic nitrogen compound
Alcohol
Organic oxygen compound
Organopnictogen compound
Carbonyl group
Organic salt
Amine
Hydrocarbon derivative
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Health effect

Nervous system disorder

Central nervous system disorder

Alzheimer's Disease (PMID: 30845751)

Renal system and urinary system

Renal disorder

Renal failure (PMID: 30845751)
Renal cell carcinoma (PMID: 26162894)

Cancer

Ovarian cancer (PMID: 30845751)
Colorectal cancer (PMID: 26162894)

Digestive system disorder

Gastrointestinal disorder

Stomach cancer (PMID: 26162894)

Disposition

Biological location

Tissue

All Tissues (HMDB: HMDB0010403)

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 18953024)

Cellular substructure

Cell

All cells and tissues (HMDB: HMDB0010403)

Greylag goose (FooDB: FOOD00368)
Guinea hen (FooDB: FOOD00373)
Ostrich (FooDB: FOOD00422)
Velvet duck (FooDB: FOOD00427)
Pheasant (FooDB: FOOD00430)
Squab (FooDB: FOOD00481)
Turkey (FooDB: FOOD00494)
Quail (FooDB: FOOD00541)
Anatidae (FooDB: FOOD00576)
Rock ptarmigan (FooDB: FOOD00597)
Columbidae (Dove, Pigeon) (FooDB: FOOD00610)
Chicken (FooDB: FOOD00329)
Mallard duck (FooDB: FOOD00353)
Emu (FooDB: FOOD00360)

Equine

Horse (FooDB: FOOD00378)

Lagomorph

Ovis

Sheep (Mutton, Lamb) (FooDB: FOOD00473)

Bovine

Venison

Deer (FooDB: FOOD00524)
Mule deer (FooDB: FOOD00348)
Elk (FooDB: FOOD00359)

Caprae

Domestic goat (FooDB: FOOD00529)

Swine

Domestic pig (FooDB: FOOD00536)
Wild boar (FooDB: FOOD00307)

Process

Naturally occurring process

Biological process

Cellular process

Apoptosis (PMID: 30845751)

Biochemical pathway

Signaling pathway

Apoptosis (PMID: 30845751)

Role

Industrial application

Pharmaceutical industry

Biomarker

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.00022 g/L	ALOGPS
logP	2.77	ALOGPS
logP	2.05	ChemAxon
logS	-6.5	ALOGPS
pKa (Strongest Acidic)	1.86	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	105.12 Å²	ChemAxon
Rotatable Bond Count	25	ChemAxon
Refractivity	175.46 m³·mol⁻¹	ChemAxon
Polarizability	64.01 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	239.411	30932474
DeepCCS	[M-H]-	237.515	30932474
DeepCCS	[M-2H]-	270.754	30932474
DeepCCS	[M+Na]+	245.81	30932474
AllCCS	[M+H]+	242.5	32859911
AllCCS	[M+H-H2O]+	241.3	32859911
AllCCS	[M+NH4]+	243.6	32859911
AllCCS	[M+Na]+	243.9	32859911
AllCCS	[M-H]-	241.3	32859911
AllCCS	[M+Na-2H]-	245.3	32859911
AllCCS	[M+HCOO]-	249.7	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0)	CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCCCC(=O)OC[C@](O)([H])COP([O-])(=O)OCC[N+](C)(C)C	4624.0	Standard polar	33892256
LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0)	CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCCCC(=O)OC[C@](O)([H])COP([O-])(=O)OCC[N+](C)(C)C	3234.9	Standard non polar	33892256
LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0)	CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCCCC(=O)OC[C@](O)([H])COP([O-])(=O)OCC[N+](C)(C)C	3878.6	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0),1TMS,isomer #1	CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)OC[C@H](COP(=O)([O-])OCC[N+](C)(C)C)O[Si](C)(C)C	3908.4	Semi standard non polar	33892256
LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0),1TBDMS,isomer #1	CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCCCC(=O)OC[C@H](COP(=O)([O-])OCC[N+](C)(C)C)O[Si](C)(C)C(C)(C)C	4139.4	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) GC-MS (1 TMS) - 70eV, Positive	splash10-03mu-9432002000-707cebb56ad76795da75	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) GC-MS ("LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0),1TMS,#1" TMS) - 70eV, Positive	Not Available	2021-10-14	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-10-15	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 10V, Negative-QTOF	splash10-0udi-0000039000-0db65398a1e2c7312322	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 20V, Negative-QTOF	splash10-0fb9-0009016000-591393aae2d684545397	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 40V, Negative-QTOF	splash10-004i-0039011000-0f2b69851f9700bff3f9	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 10V, Positive-QTOF	splash10-0006-0000090000-d19ac52f6fdee18f18ba	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 20V, Positive-QTOF	splash10-001l-0000090000-6e5cfc43d4f6c4170e27	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 40V, Positive-QTOF	splash10-0pcr-1601790000-6b8abe8133d3bcfb94f8	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 10V, Positive-QTOF	splash10-0fk9-0000090000-d3a448ba125a1d0c601b	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 20V, Positive-QTOF	splash10-0089-0900060000-679d7ca4b87c9ad34b9a	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 40V, Positive-QTOF	splash10-0ue9-0910040000-822ce24804b35ab1bc67	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 10V, Positive-QTOF	splash10-004i-0000090000-9157bb4ea7537c0f0d37	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 20V, Positive-QTOF	splash10-0190-0001090000-577f31cecd946342d9d0	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 40V, Positive-QTOF	splash10-0frl-0309040000-5fa1f20139316d5e9d40	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 10V, Negative-QTOF	splash10-014i-0003090000-bbf1bdbde0bf4b9a91b0	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 20V, Negative-QTOF	splash10-004i-1009010000-663b681e8c7f5244768e	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) 40V, Negative-QTOF	splash10-004i-1009000000-bfdb63fe967da11007c8	2021-09-24	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Blood

Tissue Locations

All Tissues

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected and Quantified	0.743 +/- 0.219 uM	Adult (>18 years old)	Both	Normal	18953024	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB027554

KNApSAcK ID

Not Available

Chemspider ID

24766538

KEGG Compound ID

C04230

BioCyc ID

PHOSPHATIDYLCHOLINE

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53480475

PDB ID

Not Available

ChEBI ID

133734

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Wernly B, Lichtenauer M, Hoppe UC, Jung C: Hyperglycemia in septic patients: an essential stress survival response in all, a robust marker for risk stratification in some, to be messed with in none. J Thorac Dis. 2016 Jul;8(7):E621-4. doi: 10.21037/jtd.2016.05.24. [PubMed:27501420 ]
Knuplez E, Marsche G: An Updated Review of Pro- and Anti-Inflammatory Properties of Plasma Lysophosphatidylcholines in the Vascular System. Int J Mol Sci. 2020 Jun 24;21(12). pii: ijms21124501. doi: 10.3390/ijms21124501. [PubMed:32599910 ]
Sun JK, Sun F, Wang X, Yuan ST, Zheng SY, Mu XW: Risk factors and prognosis of hypoalbuminemia in surgical septic patients. PeerJ. 2015 Oct 1;3:e1267. doi: 10.7717/peerj.1267. eCollection 2015. [PubMed:26557421 ]

Only showing the first 10 proteins. There are 29 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details

1. Acyl-protein thioesterase 1

General function:: Involved in hydrolase activity
Specific function:: Hydrolyzes fatty acids from S-acylated cysteine residues in proteins such as trimeric G alpha proteins or HRAS. Has depalmitoylating activity and also low lysophospholipase activity.
Gene Name:: LYPLA1
Uniprot ID:: O75608
Molecular weight:: 24669.355

Enzyme Details

2. Group XV phospholipase A2

General function:: Involved in phosphatidylcholine-sterol O-acyltransferase activity
Specific function:: Has transacylase and calcium-independent phospholipase A2 activity. Catalyzes the formation of 1-O-acyl-N-acetylsphingosine and the concomitant release of a lyso-phospholipid (By similarity). May have weak lysophospholipase activity.
Gene Name:: PLA2G15
Uniprot ID:: Q8NCC3
Molecular weight:: Not Available

Enzyme Details

3. Calcium-dependent phospholipase A2

General function:: Involved in phospholipase A2 activity
Specific function:: PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. This isozyme hydrolyzes more efficiently L-alpha-1-palmitoyl-2-oleoyl phosphatidylcholine than L-alpha-1-palmitoyl-2-arachidonyl phosphatidylcholine, L-alpha-1-palmitoyl-2-arachidonyl phosphatidylethanolamine, or L-alpha-1-stearoyl-2-arachidonyl phosphatidylinositol. May be involved in the production of lung surfactant, the remodeling or regulation of cardiac muscle.
Gene Name:: PLA2G5
Uniprot ID:: P39877
Molecular weight:: 15674.065

Enzyme Details

4. Group IIF secretory phospholipase A2

General function:: Involved in phospholipase A2 activity
Specific function:: PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Hydrolyzes phosphatidylglycerol versus phosphatidylcholine with a 15-fold preference.
Gene Name:: PLA2G2F
Uniprot ID:: Q9BZM2
Molecular weight:: 23256.29

Enzyme Details

5. Cytosolic phospholipase A2

General function:: Involved in metabolic process
Specific function:: Selectively hydrolyzes arachidonyl phospholipids in the sn-2 position releasing arachidonic acid. Together with its lysophospholipid activity, it is implicated in the initiation of the inflammatory response.
Gene Name:: PLA2G4A
Uniprot ID:: P47712
Molecular weight:: 85210.19

Enzyme Details

6. Phospholipase A2

General function:: Involved in phospholipase A2 activity
Specific function:: PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides.
Gene Name:: PLA2G1B
Uniprot ID:: P04054
Molecular weight:: 16359.535

Enzyme Details

7. Group XIIB secretory phospholipase A2-like protein

General function:: Involved in phospholipase A2 activity
Specific function:: Not known; does not seem to have catalytic activity.
Gene Name:: PLA2G12B
Uniprot ID:: Q9BX93
Molecular weight:: Not Available

Enzyme Details

8. Group 10 secretory phospholipase A2

General function:: Involved in phospholipase A2 activity
Specific function:: PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Has a powerful potency for releasing arachidonic acid from cell membrane phospholipids. Prefers phosphatidylethanolamine and phosphatidylcholine liposomes to those of phosphatidylserine.
Gene Name:: PLA2G10
Uniprot ID:: O15496
Molecular weight:: 18153.04

Enzyme Details

9. Group IIE secretory phospholipase A2

General function:: Involved in phospholipase A2 activity
Specific function:: PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides. Has a preference for arachidonic-containing phospholipids.
Gene Name:: PLA2G2E
Uniprot ID:: Q9NZK7
Molecular weight:: 15988.525

Enzyme Details

10. Acyl-protein thioesterase 2

General function:: Involved in hydrolase activity
Specific function:: May hydrolyze fatty acids from S-acylated cysteine residues in proteins such as trimeric G alpha proteins or HRAS. Has lysophospholipase activity (By similarity). Deacylates GAP43.
Gene Name:: LYPLA2
Uniprot ID:: O95372
Molecular weight:: 24736.71

Only showing the first 10 proteins. There are 29 proteins in total.

Show all enzymes and transporters

Showing metabocard for LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0) (HMDB0010403)

MOL for HMDB0010403 (LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0))

3D MOL for HMDB0010403 (LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0))

3D SDF for HMDB0010403 (LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0))

3D-SDF for HMDB0010403 (LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0))

PDB for HMDB0010403 (LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0))

3D PDB for HMDB0010403 (LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0))

SMILES for HMDB0010403 (LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0))

INCHI for HMDB0010403 (LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0))

Structure for HMDB0010403 (LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0))

3D Structure for HMDB0010403 (LysoPC(22:5(7Z,10Z,13Z,16Z,19Z)/0:0))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra

Enzymes