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Showing metabocard for (S)-3,4-Dihydroxybutyric acid (HMDB0000337)

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Record Information
Version5.0
StatusDetected and Quantified
Creation Date2005-11-16 15:48:42 UTC
Update Date2023-05-30 20:56:00 UTC
HMDB IDHMDB0000337
Secondary Accession Numbers
  • HMDB0006118
  • HMDB00337
  • HMDB06118
Metabolite Identification
Common Name(S)-3,4-Dihydroxybutyric acid
Description3,4-Dihydroxybutyric acid (also known as 3,4-Dihydroxybutanoic acid or 3,4-DB, or 2-deoxytetronic acid, or 2-DTA) is a normal human urinary metabolite that is excreted in increased concentration in patients with succinic semialdehyde dehydrogenase (SSADH) deficiency (PMID 12127325 ), which is a genetic disorder. SSADH deficiency is caused by an enzyme deficiency in GABA degradation. The most constant features with this disease are developmental delay, hypotonia and intellectual disability. Nearly half of SSADH patients exhibit ataxia, behavioral problems, seizures, and hyporeflexia. Normal adults excrete 0.37 +/- 0.15 (SD) mmoles of 3,4-dihydroxybutyrate per 24 hr. 3,4-dihydroxybutyrate is also detectable in blood. The renal clearance of 3,4-dihydroxybutyrate is roughly equal that of creatinine. 3,4-dihydroxybutyric acid has also been found in foods and is believed to be formed via the degradation (cooking) of di- and poly-saccharides (PMID: 1167165 ). 3,4-Dihydroxybutyric acid is believed to play a role in satiety or the feeling of fullness and suppresses food intake (PMID: 3191387 ; PMID: 6720928 ). 3,4-dihydroxybutyric acid is also elevated in the serum of individuals with dementia and may even serve as a predictive biomarker for dementia (PMID: 25177334 ). 3,4-Dihydroxybutyric acid is also a metabolite produced in Escherichia (PMID: 28342964 ).
Structure
Data?1676999683
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0000337 ((S)-3,4-Dihydroxybutyric acid)

3,4-Dihydroxybutyric acid.mol
  Mrv0541 02231218282D          

  8  7  0  0  0  0            999 V2000
    0.7134    0.2091    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.2053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7156    0.2053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -0.2091    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7112    1.0341    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.2016    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4268   -1.0341    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7177    1.0303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  1  5  2  0  0  0  0
  1  6  1  0  0  0  0
  4  7  1  0  0  0  0
  3  8  1  0  0  0  0
M  END
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3D MOL for HMDB0000337 ((S)-3,4-Dihydroxybutyric acid)

HMDB0000337
     RDKit          3D
(S)-3,4-Dihydroxybutyric acid
 16 15  0  0  0  0  0  0  0  0999 V2000
    2.2322   -0.1581   -1.4966 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7917   -0.0856   -0.3209 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3137    0.8969    0.5052 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7601   -1.0096    0.1607 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6201   -0.6483   -0.3462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6229   -0.6842   -1.7214 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0757    0.6881    0.1641 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3719    0.8976   -0.3067 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8495    1.6861    0.1333 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9742   -2.0345   -0.2475 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7568   -1.1266    1.2649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3031   -1.4561    0.0263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5396   -0.8432   -2.0685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3771    1.4718   -0.1331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0903    0.6561    1.2802 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6774    1.7499    0.1258 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  3  9  1  0
  4 10  1  0
  4 11  1  0
  5 12  1  0
  6 13  1  0
  7 14  1  0
  7 15  1  0
  8 16  1  0
M  END
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3D SDF for HMDB0000337 ((S)-3,4-Dihydroxybutyric acid)

3,4-Dihydroxybutyric acid.mol
  Mrv0541 02231218282D          

  8  7  0  0  0  0            999 V2000
    0.7134    0.2091    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.2053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7156    0.2053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -0.2091    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7112    1.0341    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.2016    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4268   -1.0341    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7177    1.0303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  1  5  2  0  0  0  0
  1  6  1  0  0  0  0
  4  7  1  0  0  0  0
  3  8  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0000337

> <DATABASE_NAME>
hmdb

> <SMILES>
OCC(O)CC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C4H8O4/c5-2-3(6)1-4(7)8/h3,5-6H,1-2H2,(H,7,8)

> <INCHI_KEY>
DZAIOXUZHHTJKN-UHFFFAOYSA-N

> <FORMULA>
C4H8O4

> <MOLECULAR_WEIGHT>
120.1039

> <EXACT_MASS>
120.042258744

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
10.9061022959665

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3,4-dihydroxybutanoic acid

> <ALOGPS_LOGP>
-1.54

> <JCHEM_LOGP>
-1.433915966

> <ALOGPS_LOGS>
0.84

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.288104053178337

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.086188822234564

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9449499833882467

> <JCHEM_POLAR_SURFACE_AREA>
77.76

> <JCHEM_REFRACTIVITY>
25.0078

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.32e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3,4-dihydroxybutanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0000337 ((S)-3,4-Dihydroxybutyric acid)

HMDB0000337
     RDKit          3D
(S)-3,4-Dihydroxybutyric acid
 16 15  0  0  0  0  0  0  0  0999 V2000
    2.2322   -0.1581   -1.4966 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7917   -0.0856   -0.3209 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3137    0.8969    0.5052 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7601   -1.0096    0.1607 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6201   -0.6483   -0.3462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6229   -0.6842   -1.7214 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0757    0.6881    0.1641 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3719    0.8976   -0.3067 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8495    1.6861    0.1333 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9742   -2.0345   -0.2475 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7568   -1.1266    1.2649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3031   -1.4561    0.0263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5396   -0.8432   -2.0685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3771    1.4718   -0.1331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0903    0.6561    1.2802 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6774    1.7499    0.1258 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  3  9  1  0
  4 10  1  0
  4 11  1  0
  5 12  1  0
  6 13  1  0
  7 14  1  0
  7 15  1  0
  8 16  1  0
M  END
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PDB for HMDB0000337 ((S)-3,4-Dihydroxybutyric acid)

HEADER    PROTEIN                                 23-FEB-12   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: 3,4-Dihydroxybutyric acid.mol                     
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-FEB-12         0                                  
HETATM    1  C   UNK     0       1.332   0.390   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000  -0.383   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.336   0.383   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.667  -0.390   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       1.328   1.930   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0       2.667  -0.376   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0      -2.663  -1.930   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0      -1.340   1.923   0.000  0.00  0.00           O+0
CONECT    1    2    5    6                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    7                                                       
CONECT    5    1                                                            
CONECT    6    1                                                            
CONECT    7    4                                                            
CONECT    8    3                                                            
MASTER        0    0    0    0    0    0    0    0    8    0   14    0
END
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3D PDB for HMDB0000337 ((S)-3,4-Dihydroxybutyric acid)

COMPND    HMDB0000337
HETATM    1  O1  UNL     1       2.232  -0.158  -1.497  1.00  0.00           O  
HETATM    2  C1  UNL     1       1.792  -0.086  -0.321  1.00  0.00           C  
HETATM    3  O2  UNL     1       2.314   0.897   0.505  1.00  0.00           O  
HETATM    4  C2  UNL     1       0.760  -1.010   0.161  1.00  0.00           C  
HETATM    5  C3  UNL     1      -0.620  -0.648  -0.346  1.00  0.00           C  
HETATM    6  O3  UNL     1      -0.623  -0.684  -1.721  1.00  0.00           O  
HETATM    7  C4  UNL     1      -1.076   0.688   0.164  1.00  0.00           C  
HETATM    8  O4  UNL     1      -2.372   0.898  -0.307  1.00  0.00           O  
HETATM    9  H1  UNL     1       2.849   1.686   0.133  1.00  0.00           H  
HETATM   10  H2  UNL     1       0.974  -2.035  -0.248  1.00  0.00           H  
HETATM   11  H3  UNL     1       0.757  -1.127   1.265  1.00  0.00           H  
HETATM   12  H4  UNL     1      -1.303  -1.456   0.026  1.00  0.00           H  
HETATM   13  H5  UNL     1      -1.540  -0.843  -2.068  1.00  0.00           H  
HETATM   14  H6  UNL     1      -0.377   1.472  -0.133  1.00  0.00           H  
HETATM   15  H7  UNL     1      -1.090   0.656   1.280  1.00  0.00           H  
HETATM   16  H8  UNL     1      -2.677   1.750   0.126  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3    4
CONECT    3    9
CONECT    4    5   10   11
CONECT    5    6    7   12
CONECT    6   13
CONECT    7    8   14   15
CONECT    8   16
END
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SMILES for HMDB0000337 ((S)-3,4-Dihydroxybutyric acid)

OCC(O)CC(O)=O
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INCHI for HMDB0000337 ((S)-3,4-Dihydroxybutyric acid)

InChI=1S/C4H8O4/c5-2-3(6)1-4(7)8/h3,5-6H,1-2H2,(H,7,8)
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View in JSmolView NMR AssignmentsView Stereo Labels
Synonyms
ValueSource
(S)-3,4-DihydroxybutyrateGenerator
(S)-3,4-Dihydroxy-butyric acidHMDB
(S)-3,4-DihydroxybutanoateHMDB
(S)-3,4-Dihydroxybutanoic acidHMDB
2-DeoxytetronateHMDB
2-Deoxytetronic acidHMDB
3,4-DihydroxybutanoateHMDB
3,4-Dihydroxybutanoic acidHMDB
3,4-Dihydroxybutanoic acid, (S)-isomerHMDB
3,4-Dihydroxybutanoic acid, monosodium saltHMDB
Chemical FormulaC4H8O4
Average Molecular Weight120.1039
Monoisotopic Molecular Weight120.042258744
IUPAC Name3,4-dihydroxybutanoic acid
Traditional Name3,4-dihydroxybutanoic acid
CAS Registry Number51267-44-8
SMILES
OCC(O)CC(O)=O
InChI Identifier
InChI=1S/C4H8O4/c5-2-3(6)1-4(7)8/h3,5-6H,1-2H2,(H,7,8)
InChI KeyDZAIOXUZHHTJKN-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as beta hydroxy acids and derivatives. Beta hydroxy acids and derivatives are compounds containing a carboxylic acid substituted with a hydroxyl group on the C3 carbon atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassHydroxy acids and derivatives
Sub ClassBeta hydroxy acids and derivatives
Direct ParentBeta hydroxy acids and derivatives
Alternative Parents
Substituents
  • Beta-hydroxy acid
  • Short-chain hydroxy acid
  • Fatty acid
  • 1,2-diol
  • Secondary alcohol
  • Carboxylic acid derivative
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Organic oxygen compound
  • Organooxygen compound
  • Primary alcohol
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Alcohol
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
Role
Industrial application
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility832 g/LALOGPS
logP-1.5ALOGPS
logP-1.4ChemAxon
logS0.84ALOGPS
pKa (Strongest Acidic)4.09ChemAxon
pKa (Strongest Basic)-2.9ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area77.76 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity25.01 m³·mol⁻¹ChemAxon
Polarizability10.91 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+126.09631661259
DarkChem[M-H]-118.65531661259
AllCCS[M+H]+129.48232859911
AllCCS[M-H]-123.56332859911
DeepCCS[M+H]+133.01230932474
DeepCCS[M-H]-130.24930932474
DeepCCS[M-2H]-166.60330932474
DeepCCS[M+Na]+141.49330932474
AllCCS[M+H]+129.532859911
AllCCS[M+H-H2O]+125.332859911
AllCCS[M+NH4]+133.432859911
AllCCS[M+Na]+134.532859911
AllCCS[M-H]-123.632859911
AllCCS[M+Na-2H]-126.832859911
AllCCS[M+HCOO]-130.332859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(S)-3,4-Dihydroxybutyric acidOCC(O)CC(O)=O2636.1Standard polar33892256
(S)-3,4-Dihydroxybutyric acidOCC(O)CC(O)=O1148.1Standard non polar33892256
(S)-3,4-Dihydroxybutyric acidOCC(O)CC(O)=O1210.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(S)-3,4-Dihydroxybutyric acid,1TMS,isomer #1C[Si](C)(C)OCC(O)CC(=O)O1307.9Semi standard non polar33892256
(S)-3,4-Dihydroxybutyric acid,1TMS,isomer #2C[Si](C)(C)OC(CO)CC(=O)O1282.7Semi standard non polar33892256
(S)-3,4-Dihydroxybutyric acid,1TMS,isomer #3C[Si](C)(C)OC(=O)CC(O)CO1269.9Semi standard non polar33892256
(S)-3,4-Dihydroxybutyric acid,2TMS,isomer #1C[Si](C)(C)OCC(CC(=O)O)O[Si](C)(C)C1379.9Semi standard non polar33892256
(S)-3,4-Dihydroxybutyric acid,2TMS,isomer #2C[Si](C)(C)OCC(O)CC(=O)O[Si](C)(C)C1366.6Semi standard non polar33892256
(S)-3,4-Dihydroxybutyric acid,2TMS,isomer #3C[Si](C)(C)OC(=O)CC(CO)O[Si](C)(C)C1339.2Semi standard non polar33892256
(S)-3,4-Dihydroxybutyric acid,3TMS,isomer #1C[Si](C)(C)OCC(CC(=O)O[Si](C)(C)C)O[Si](C)(C)C1432.9Semi standard non polar33892256
(S)-3,4-Dihydroxybutyric acid,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC(O)CC(=O)O1561.3Semi standard non polar33892256
(S)-3,4-Dihydroxybutyric acid,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(CO)CC(=O)O1539.4Semi standard non polar33892256
(S)-3,4-Dihydroxybutyric acid,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)CC(O)CO1496.4Semi standard non polar33892256
(S)-3,4-Dihydroxybutyric acid,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC(CC(=O)O)O[Si](C)(C)C(C)(C)C1842.2Semi standard non polar33892256
(S)-3,4-Dihydroxybutyric acid,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OCC(O)CC(=O)O[Si](C)(C)C(C)(C)C1799.7Semi standard non polar33892256
(S)-3,4-Dihydroxybutyric acid,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)CC(CO)O[Si](C)(C)C(C)(C)C1776.9Semi standard non polar33892256
(S)-3,4-Dihydroxybutyric acid,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OCC(CC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2061.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-EI-TOF (Non-derivatized)splash10-0012-0910000000-4054231c9c4cffa8a3c92017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-EI-TOF (Non-derivatized)splash10-0012-0910000000-4054231c9c4cffa8a3c92018-05-18HMDB team, MONA, MassBankView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-08iu-9000000000-92e0a2008c94b2db1bc72017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (3 TMS) - 70eV, Positivesplash10-00di-9282000000-4da1d5189d3237b2686b2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (TMS_2_2) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (TMS_2_3) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (TBDMS_1_3) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (TBDMS_2_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (TBDMS_2_2) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (TBDMS_2_3) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-3,4-Dihydroxybutyric acid GC-MS (TBDMS_3_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,4-Dihydroxybutyric acid 10V, Positive-QTOFsplash10-0udr-5900000000-87e855dfa4a5229ec1062015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,4-Dihydroxybutyric acid 20V, Positive-QTOFsplash10-0gw0-9300000000-88020d54d9b37645b8732015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,4-Dihydroxybutyric acid 40V, Positive-QTOFsplash10-0a4u-9000000000-d0c64e75e2e9de34f6832015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,4-Dihydroxybutyric acid 10V, Negative-QTOFsplash10-014i-7900000000-6aec80cde1bf2e0bca192015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,4-Dihydroxybutyric acid 20V, Negative-QTOFsplash10-0pxr-9300000000-93d09801aa0c902a4e8f2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,4-Dihydroxybutyric acid 40V, Negative-QTOFsplash10-0a4l-9000000000-d765ea0631d1952408812015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,4-Dihydroxybutyric acid 10V, Negative-QTOFsplash10-100r-9800000000-ffa16223efb911c9d73f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,4-Dihydroxybutyric acid 20V, Negative-QTOFsplash10-052f-9000000000-bc157a746d15e9e7e4db2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,4-Dihydroxybutyric acid 40V, Negative-QTOFsplash10-052f-9000000000-7757ca7f030b13718ba52021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,4-Dihydroxybutyric acid 10V, Positive-QTOFsplash10-0zg3-9300000000-c6d15c164679f4cee3182021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,4-Dihydroxybutyric acid 20V, Positive-QTOFsplash10-0a4u-9000000000-2bf7e4eaae1145abfaf62021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-3,4-Dihydroxybutyric acid 40V, Positive-QTOFsplash10-0006-9000000000-c0f696c0c09a7059f8aa2021-09-23Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-03FELIX labView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
  • Cerebrospinal Fluid (CSF)
  • Feces
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified18.0 (0.0-54.0) uMAdult (>18 years old)BothNormal details
Cerebrospinal Fluid (CSF)Detected and Quantified15.0 +/- 15.0 uMAdult (>18 years old)BothNormal details
FecesDetected but not QuantifiedNot QuantifiedNot SpecifiedNot Specified
Normal		 details
FecesDetected but not QuantifiedNot QuantifiedInfant (0-1 year old)Both
Normal		 details
UrineDetected and Quantified67.400 +/- 56.200 umol/mmol creatinineInfant (0-1 year old)Both
Normal		 details
UrineDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Both
Normal		 details
UrineDetected and Quantified21.2 (9.3-47.0) umol/mmol creatinineNewborn (0-30 days old)BothNormal details
UrineDetected and Quantified23.9 (12.4-31.8) umol/mmol creatinineInfant (0-1 year old)BothNormal details
UrineDetected and Quantified10.2 (6.4-16.7) umol/mmol creatinineChildren (1-13 years old)BothNormal details
UrineDetected and Quantified8.3 (4.8-22.4) umol/mmol creatinineAdolescent (13-18 years old)BothNormal details
UrineDetected and Quantified73.0 +/- 24.0 umol/mmol creatinineNewborn (0-30 days old)BothNormal
    • Geigy Scientific ...
 details
UrineDetected and Quantified8.0 +/- 3.0 umol/mmol creatinineAdult (>18 years old)BothNormal
    • Geigy Scientific ...
 details
UrineDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothNormal details
UrineDetected and Quantified34.9 (12.5 - 57.2) umol/mmol creatinineAdult (>18 years old)Not SpecifiedNormal details
UrineDetected and Quantified42.2 (21.9-56.1) umol/mmol creatinineAdult (>18 years old)Both
Normal		 details
UrineDetected and Quantified5.26 (4.24-6.80) umol/mmol creatinineNewborn (0-30 days old)Both
Normal
    • Analysis of 40 NI...
 details
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
UrineDetected and Quantified137.5 (50.0-225.0) umol/mmol creatinineChildren (1-13 years old)Both4-Hydroxybutyric Aciduria
    • MetaGene: Metabol...
 details
UrineDetected and Quantified810-1160 umol/mmol creatinineInfant (0-1 year old)Male
Succinic semialdehyde dehydrogenase deficiency		 details
UrineDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothBladder cancer details
Associated Disorders and Diseases
Disease References
Succinic semialdehyde dehydrogenase deficiency
  1. Shinka T, Inoue Y, Ohse M, Ito A, Ohfu M, Hirose S, Kuhara T: Rapid and sensitive detection of urinary 4-hydroxybutyric acid and its related compounds by gas chromatography-mass spectrometry in a patient with succinic semialdehyde dehydrogenase deficiency. J Chromatogr B Analyt Technol Biomed Life Sci. 2002 Aug 25;776(1):57-63. [PubMed:12127325 ]
  2. G.Frauendienst-Egger, Friedrich K. Trefz (2017). MetaGene: Metabolic & Genetic Information Center (MIC: http://www.metagene.de). METAGENE consortium.
Associated OMIM IDs
  • 271980 (Succinic semialdehyde dehydrogenase deficiency)
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB021961
KNApSAcK IDC00052139
Chemspider ID133026
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound150929
PDB IDNot Available
ChEBI ID86371
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDMDB00000147
Good Scents IDNot Available
References
Synthesis ReferenceCho, Yik-haeng; Chun, Jongpil; Park, Youngmi; Roh, Kyoungrok; Yu, Hosung; Hwang, Daeil. Process for preparing optically pure (S)-3,4-dihydroxybutyric acid derivatives. PCT Int. Appl. (2000), 29 pp.
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Guneral F, Bachmann C: Age-related reference values for urinary organic acids in a healthy Turkish pediatric population. Clin Chem. 1994 Jun;40(6):862-6. [PubMed:8087979 ]
  2. Ohdoi C, Nyhan WL, Kuhara T: Chemical diagnosis of Lesch-Nyhan syndrome using gas chromatography-mass spectrometry detection. J Chromatogr B Analyt Technol Biomed Life Sci. 2003 Jul 15;792(1):123-30. [PubMed:12829005 ]
  3. Nakajima MO, Etoh Y, Yanai M, Kawamura R, Kaneko K, Aoyagi K, Koiso K: [Novel renal function marker, ATP--establishing the normal range, cases of anti-tumor drags administration for urinary-track tumor, diabetic diseases and a newborn baby]. Rinsho Byori. 2002 May;50(5):513-8. [PubMed:12078051 ]
  4. Fell V, Lee CR, Pollitt RJ: The occurrence of (S)-3,4-dihydroxybutyrate in human blood and urine. Biochem Med. 1975 May;13(1):40-5. [PubMed:1167165 ]
  5. Shinka T, Inoue Y, Ohse M, Ito A, Ohfu M, Hirose S, Kuhara T: Rapid and sensitive detection of urinary 4-hydroxybutyric acid and its related compounds by gas chromatography-mass spectrometry in a patient with succinic semialdehyde dehydrogenase deficiency. J Chromatogr B Analyt Technol Biomed Life Sci. 2002 Aug 25;776(1):57-63. [PubMed:12127325 ]
  6. Minami T, Oomura Y, Nabekura J, Fukuda A: Direct effects of 3,4-dihydroxybutanoic acid gamma-lactone and 2,4,5-trihydroxypentanoic acid gamma-lactone on lateral and ventromedial hypothalamic neurons. Brain Res. 1988 Oct 18;462(2):258-64. [PubMed:3191387 ]
  7. Shimizu N, Oomura Y, Sakata T: Modulation of feeding by endogenous sugar acids acting as hunger or satiety factors. Am J Physiol. 1984 Apr;246(4 Pt 2):R542-50. doi: 10.1152/ajpregu.1984.246.4.R542. [PubMed:6720928 ]
  8. Mousavi M, Jonsson P, Antti H, Adolfsson R, Nordin A, Bergdahl J, Eriksson K, Moritz T, Nilsson LG, Nyberg L: Serum metabolomic biomarkers of dementia. Dement Geriatr Cogn Dis Extra. 2014 Jul 11;4(2):252-62. doi: 10.1159/000364816. eCollection 2014 May. [PubMed:25177334 ]
  9. Wang J, Shen X, Jain R, Wang J, Yuan Q, Yan Y: Establishing a novel biosynthetic pathway for the production of 3,4-dihydroxybutyric acid from xylose in Escherichia coli. Metab Eng. 2017 May;41:39-45. doi: 10.1016/j.ymben.2017.03.003. Epub 2017 Mar 23. [PubMed:28342964 ]