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Showing metabocard for Pyrroline hydroxycarboxylic acid (HMDB0001369)

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IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesenzymes (4) Show 4 proteinsXML
enzymes (4) Show 4 proteins
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2005-11-16 15:48:42 UTC
Update Date2021-09-14 15:38:57 UTC
HMDB IDHMDB0001369
Secondary Accession Numbers
  • HMDB01369
Metabolite Identification
Common NamePyrroline hydroxycarboxylic acid
DescriptionPyrroline hydroxycarboxylic acid is a metabolite identified in the urine of patients with type II hyperprolinemia. (OMIM 239510 ). The urinary excretion of Pyrroline hydroxycarboxylic acid increased in hyperprolinemic patients but not in healthy controls during oral loading of hydroxyproline and hydroxyproline-ornithine. (PMID: 533224 ). Hyperprolinemia type II (HP II) is a rare inherited metabolic disease due to the deficiency of pyroline-5-carboxylate dehydrogenase. It is generally believed to be a benign condition although some patients have neurological problems such as refractory convulsions. (PMID: 15214748 ). The oxidation of pyrroline-carboxylate generates glutamate and pyrroline-hydroxycarboxylate, a reaction catalyzed by hydroxyproline oxidase (PMID: 500817 ).
Structure
Data?1582752196
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0001369 (Pyrroline hydroxycarboxylic acid)


  Mrv0541 02231219052D          

  9  9  0  0  0  0            999 V2000
   -0.2994    0.1099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2994   -0.7126    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4093    0.5268    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0157    0.5192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1219   -0.7126    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1219    0.1099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0157    1.3454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7283    0.1023    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7055   -1.2962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  3  1  0  0  0  0
  1  4  1  0  0  0  0
  2  5  1  0  0  0  0
  3  6  2  0  0  0  0
  4  7  1  0  0  0  0
  4  8  2  0  0  0  0
  5  9  1  0  0  0  0
  5  6  1  0  0  0  0
M  END
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3D MOL for HMDB0001369 (Pyrroline hydroxycarboxylic acid)

HMDB0001369
     RDKit          3D
Pyrroline hydroxycarboxylic acid
 16 16  0  0  0  0  0  0  0  0999 V2000
    2.5616   -0.4281   -0.5805 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7284    0.0099    0.2582 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9488    1.2521    0.8497 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5606   -0.8335    0.5610 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3144   -1.0430   -0.6865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3151    0.0547   -0.4833 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9102    1.2497   -1.0722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3478    0.2257    0.9842 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3192   -0.2658    1.5097 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2752    2.0247    0.2844 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9067   -1.8228    0.9623 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7371   -2.0422   -0.6006 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3373   -0.8948   -1.5723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3221   -0.1963   -0.8717 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8572    1.9767   -0.4106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1954    0.7331    1.5280 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  9  4  1  0
  3 10  1  0
  4 11  1  0
  5 12  1  0
  5 13  1  0
  6 14  1  0
  7 15  1  0
  8 16  1  0
M  END
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3D SDF for HMDB0001369 (Pyrroline hydroxycarboxylic acid)


  Mrv0541 02231219052D          

  9  9  0  0  0  0            999 V2000
   -0.2994    0.1099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2994   -0.7126    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4093    0.5268    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0157    0.5192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1219   -0.7126    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1219    0.1099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0157    1.3454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7283    0.1023    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7055   -1.2962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  3  1  0  0  0  0
  1  4  1  0  0  0  0
  2  5  1  0  0  0  0
  3  6  2  0  0  0  0
  4  7  1  0  0  0  0
  4  8  2  0  0  0  0
  5  9  1  0  0  0  0
  5  6  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0001369

> <DATABASE_NAME>
hmdb

> <SMILES>
OC1CC(N=C1)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C5H7NO3/c7-3-1-4(5(8)9)6-2-3/h2-4,7H,1H2,(H,8,9)

> <INCHI_KEY>
WFOFKRKDDKGRIK-UHFFFAOYSA-N

> <FORMULA>
C5H7NO3

> <MOLECULAR_WEIGHT>
129.114

> <EXACT_MASS>
129.042593095

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
11.595062277388251

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
4-hydroxy-3,4-dihydro-2H-pyrrole-2-carboxylic acid

> <ALOGPS_LOGP>
-1.10

> <JCHEM_LOGP>
-1.4545071951925133

> <ALOGPS_LOGS>
-0.58

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.25483703022578

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.7212230695209163

> <JCHEM_PKA_STRONGEST_BASIC>
2.5899435587205386

> <JCHEM_POLAR_SURFACE_AREA>
69.89

> <JCHEM_REFRACTIVITY>
28.8459

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.39e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
pyrroline-hydroxy-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0001369 (Pyrroline hydroxycarboxylic acid)

HMDB0001369
     RDKit          3D
Pyrroline hydroxycarboxylic acid
 16 16  0  0  0  0  0  0  0  0999 V2000
    2.5616   -0.4281   -0.5805 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7284    0.0099    0.2582 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9488    1.2521    0.8497 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5606   -0.8335    0.5610 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3144   -1.0430   -0.6865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3151    0.0547   -0.4833 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9102    1.2497   -1.0722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3478    0.2257    0.9842 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3192   -0.2658    1.5097 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2752    2.0247    0.2844 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9067   -1.8228    0.9623 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7371   -2.0422   -0.6006 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3373   -0.8948   -1.5723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3221   -0.1963   -0.8717 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8572    1.9767   -0.4106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1954    0.7331    1.5280 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  9  4  1  0
  3 10  1  0
  4 11  1  0
  5 12  1  0
  5 13  1  0
  6 14  1  0
  7 15  1  0
  8 16  1  0
M  END
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PDB for HMDB0001369 (Pyrroline hydroxycarboxylic acid)

HEADER    PROTEIN                                 23-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-FEB-12         0                                  
HETATM    1  C   UNK     0      -0.559   0.205   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.559  -1.330   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0       0.764   0.983   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0      -1.896   0.969   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.094  -1.330   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.094   0.205   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -1.896   2.511   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0      -3.226   0.191   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0       3.184  -2.420   0.000  0.00  0.00           O+0
CONECT    1    2    3    4                                                  
CONECT    2    1    5                                                       
CONECT    3    1    6                                                       
CONECT    4    1    7    8                                                  
CONECT    5    2    9    6                                                  
CONECT    6    3    5                                                       
CONECT    7    4                                                            
CONECT    8    4                                                            
CONECT    9    5                                                            
MASTER        0    0    0    0    0    0    0    0    9    0   18    0
END
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3D PDB for HMDB0001369 (Pyrroline hydroxycarboxylic acid)

COMPND    HMDB0001369
HETATM    1  O1  UNL     1       2.562  -0.428  -0.580  1.00  0.00           O  
HETATM    2  C1  UNL     1       1.728   0.010   0.258  1.00  0.00           C  
HETATM    3  O2  UNL     1       1.949   1.252   0.850  1.00  0.00           O  
HETATM    4  C2  UNL     1       0.561  -0.834   0.561  1.00  0.00           C  
HETATM    5  C3  UNL     1      -0.314  -1.043  -0.687  1.00  0.00           C  
HETATM    6  C4  UNL     1      -1.315   0.055  -0.483  1.00  0.00           C  
HETATM    7  O3  UNL     1      -0.910   1.250  -1.072  1.00  0.00           O  
HETATM    8  C5  UNL     1      -1.348   0.226   0.984  1.00  0.00           C  
HETATM    9  N1  UNL     1      -0.319  -0.266   1.510  1.00  0.00           N  
HETATM   10  H1  UNL     1       2.275   2.025   0.284  1.00  0.00           H  
HETATM   11  H2  UNL     1       0.907  -1.823   0.962  1.00  0.00           H  
HETATM   12  H3  UNL     1      -0.737  -2.042  -0.601  1.00  0.00           H  
HETATM   13  H4  UNL     1       0.337  -0.895  -1.572  1.00  0.00           H  
HETATM   14  H5  UNL     1      -2.322  -0.196  -0.872  1.00  0.00           H  
HETATM   15  H6  UNL     1      -0.857   1.977  -0.411  1.00  0.00           H  
HETATM   16  H7  UNL     1      -2.195   0.733   1.528  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3    4
CONECT    3   10
CONECT    4    5    9   11
CONECT    5    6   12   13
CONECT    6    7    8   14
CONECT    7   15
CONECT    8    9    9   16
END
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SMILES for HMDB0001369 (Pyrroline hydroxycarboxylic acid)

OC1CC(N=C1)C(O)=O
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INCHI for HMDB0001369 (Pyrroline hydroxycarboxylic acid)

InChI=1S/C5H7NO3/c7-3-1-4(5(8)9)6-2-3/h2-4,7H,1H2,(H,8,9)
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View in JSmolView NMR AssignmentsView Stereo Labels
Synonyms
ValueSource
Pyrroline hydroxycarboxylateGenerator
3-Hydroxy-L-1-pyrroline-5-carboxylateHMDB
L-1-Pyrroline 3-hydroxy-5-carboxylateHMDB
L-1-Pyrroline-3-hydroxy-5-carboxylateHMDB
L-Delta1-Pyrroline 3-hydroxy-5-carboxylateHMDB
Pyrroline-hydroxy-carboxylateHMDB
3,4-Dihydro-3-hydroxy-2H-pyrrole-5-carboxylic acidHMDB
3-Hydroxy delta 1-pyrroline-5-carboxylic acidHMDB
3-Hydroxy delta 1-pyrroline-5-carboxylic acid, anionHMDB
Chemical FormulaC5H7NO3
Average Molecular Weight129.114
Monoisotopic Molecular Weight129.042593095
IUPAC Name4-hydroxy-3,4-dihydro-2H-pyrrole-2-carboxylic acid
Traditional Namepyrroline-hydroxy-carboxylate
CAS Registry Number22573-88-2
SMILES
OC1CC(N=C1)C(O)=O
InChI Identifier
InChI=1S/C5H7NO3/c7-3-1-4(5(8)9)6-2-3/h2-4,7H,1H2,(H,8,9)
InChI KeyWFOFKRKDDKGRIK-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentAlpha amino acids and derivatives
Alternative Parents
Substituents
  • Alpha-amino acid or derivatives
  • Pyrroline carboxylic acid
  • Pyrroline carboxylic acid or derivatives
  • Pyrroline
  • Secondary alcohol
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Propargyl-type 1,3-dipolar organic compound
  • Organic 1,3-dipolar compound
  • Organoheterocyclic compound
  • Azacycle
  • Organopnictogen compound
  • Organic oxygen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Carbonyl group
  • Alcohol
  • Imine
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External Descriptors
Ontology
Disposition

Biological location

Source

Process

Naturally occurring process

Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility33.9 g/LALOGPS
logP-1.1ALOGPS
logP-1.5ChemAxon
logS-0.58ALOGPS
pKa (Strongest Acidic)3.72ChemAxon
pKa (Strongest Basic)2.59ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area69.89 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity28.85 m³·mol⁻¹ChemAxon
Polarizability11.6 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+127.35131661259
DarkChem[M-H]-123.38131661259
AllCCS[M+H]+128.80932859911
AllCCS[M-H]-121.78232859911
DeepCCS[M+H]+123.71830932474
DeepCCS[M-H]-120.91730932474
DeepCCS[M-2H]-157.39930932474
DeepCCS[M+Na]+132.1530932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Pyrroline hydroxycarboxylic acidOC1CC(N=C1)C(O)=O2168.4Standard polar33892256
Pyrroline hydroxycarboxylic acidOC1CC(N=C1)C(O)=O1201.3Standard non polar33892256
Pyrroline hydroxycarboxylic acidOC1CC(N=C1)C(O)=O1379.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Pyrroline hydroxycarboxylic acid,1TMS,isomer #1C[Si](C)(C)OC1C=NC(C(=O)O)C11393.9Semi standard non polar33892256
Pyrroline hydroxycarboxylic acid,1TMS,isomer #2C[Si](C)(C)OC(=O)C1CC(O)C=N11277.1Semi standard non polar33892256
Pyrroline hydroxycarboxylic acid,2TMS,isomer #1C[Si](C)(C)OC(=O)C1CC(O[Si](C)(C)C)C=N11407.7Semi standard non polar33892256
Pyrroline hydroxycarboxylic acid,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1C=NC(C(=O)O)C11640.6Semi standard non polar33892256
Pyrroline hydroxycarboxylic acid,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1CC(O)C=N11549.4Semi standard non polar33892256
Pyrroline hydroxycarboxylic acid,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1CC(O[Si](C)(C)C(C)(C)C)C=N11839.4Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Pyrroline hydroxycarboxylic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-0a4l-9100000000-81454e4422185c7858e42016-09-22Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Pyrroline hydroxycarboxylic acid GC-MS (2 TMS) - 70eV, Positivesplash10-0a4i-5910000000-0d5241ee660e7a60b0f92017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Pyrroline hydroxycarboxylic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - Pyrroline hydroxycarboxylic acid Quattro_QQQ 10V, Positive-QTOF (Annotated)splash10-001i-9600000000-8e7afe6ced148f01b7152012-07-24HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrroline hydroxycarboxylic acid 10V, Positive-QTOFsplash10-03di-3900000000-91b528e579ac4acfac932016-09-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrroline hydroxycarboxylic acid 20V, Positive-QTOFsplash10-02u0-9400000000-c804fee192934438c5322016-09-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrroline hydroxycarboxylic acid 40V, Positive-QTOFsplash10-014i-9000000000-7da85099ac98a08f57412016-09-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrroline hydroxycarboxylic acid 10V, Negative-QTOFsplash10-004i-2900000000-ee7c942618fc6b2d94a92016-09-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrroline hydroxycarboxylic acid 20V, Negative-QTOFsplash10-02e9-9700000000-1d9848f227e64812ada62016-09-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrroline hydroxycarboxylic acid 40V, Negative-QTOFsplash10-015c-9000000000-0d2b20e1b4dbed83a1442016-09-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrroline hydroxycarboxylic acid 10V, Negative-QTOFsplash10-004i-0900000000-06e1bd2d2793c5f0afaa2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrroline hydroxycarboxylic acid 20V, Negative-QTOFsplash10-0059-9400000000-a84600f4fc13459b94482021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrroline hydroxycarboxylic acid 40V, Negative-QTOFsplash10-0006-9000000000-d2c2d7b1e05ce54b09322021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrroline hydroxycarboxylic acid 10V, Positive-QTOFsplash10-001i-9300000000-c26ff3ebe1bb758e52522021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrroline hydroxycarboxylic acid 20V, Positive-QTOFsplash10-053r-9000000000-97da4a76921516901d462021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrroline hydroxycarboxylic acid 40V, Positive-QTOFsplash10-0pc3-9000000000-8982b409276eceb00f1b2021-09-22Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Mitochondria
Biospecimen Locations
  • Saliva
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
SalivaDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothNormal details
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
SalivaDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothOral cancer details
SalivaDetected but not QuantifiedNot QuantifiedAdult (>18 years old)FemaleBreast cancer details
SalivaDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Not SpecifiedPancreatic cancer details
SalivaDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Not SpecifiedPeriodontal diseases details
Associated Disorders and Diseases
Disease References
Perillyl alcohol administration for cancer treatment
  1. Sugimoto M, Wong DT, Hirayama A, Soga T, Tomita M: Capillary electrophoresis mass spectrometry-based saliva metabolomics identified oral, breast and pancreatic cancer-specific profiles. Metabolomics. 2010 Mar;6(1):78-95. Epub 2009 Sep 10. [PubMed:20300169 ]
Pancreatic cancer
  1. Sugimoto M, Wong DT, Hirayama A, Soga T, Tomita M: Capillary electrophoresis mass spectrometry-based saliva metabolomics identified oral, breast and pancreatic cancer-specific profiles. Metabolomics. 2010 Mar;6(1):78-95. Epub 2009 Sep 10. [PubMed:20300169 ]
Periodontal disease
  1. Sugimoto M, Wong DT, Hirayama A, Soga T, Tomita M: Capillary electrophoresis mass spectrometry-based saliva metabolomics identified oral, breast and pancreatic cancer-specific profiles. Metabolomics. 2010 Mar;6(1):78-95. Epub 2009 Sep 10. [PubMed:20300169 ]
Associated OMIM IDs
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB022582
KNApSAcK IDNot Available
Chemspider ID1030
KEGG Compound IDC04281
BioCyc IDNot Available
BiGG ID43511
Wikipedia LinkNot Available
METLIN ID6196
PubChem Compound1059
PDB IDNot Available
ChEBI ID27391
Food Biomarker OntologyNot Available
VMH ID1P3H5C
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simila S: Hydroxyproline metabolism in type II hyperprolinaemia. Ann Clin Biochem. 1979 Jul;16(4):177-81. [PubMed:533224 ]
  2. Onenli-Mungan N, Yuksel B, Elkay M, Topaloglu AK, Baykal T, Ozer G: Type II hyperprolinemia: a case report. Turk J Pediatr. 2004 Apr-Jun;46(2):167-9. [PubMed:15214748 ]
  3. Valle D, Goodman SI, Harris SC, Phang JM: Genetic evidence for a common enzyme catalyzing the second step in the degradation of proline and hydroxyproline. J Clin Invest. 1979 Nov;64(5):1365-70. [PubMed:500817 ]

Enzymes

Enzyme Details
1. Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial
General function:
Involved in oxidoreductase activity
Specific function:
Irreversible conversion of delta-1-pyrroline-5-carboxylate (P5C), derived either from proline or ornithine, to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes.
Gene Name:
ALDH4A1
Uniprot ID:
P30038
Molecular weight:
55117.24
Reactions
Pyrroline hydroxycarboxylic acid + NAD + Water → 4-Hydroxy-L-glutamic acid + NADH + Hydrogen Iondetails
Pyrroline hydroxycarboxylic acid + NADP + Water → 4-Hydroxy-L-glutamic acid + NADPH + Hydrogen Iondetails
Enzyme Details
2. Pyrroline-5-carboxylate reductase 1, mitochondrial
General function:
Involved in oxidoreductase activity
Specific function:
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. Can utilize both NAD and NADP, but has higher affinity for NAD. Involved in the cellular response to oxidative stress.
Gene Name:
PYCR1
Uniprot ID:
P32322
Molecular weight:
33360.27
Reactions
4-Hydroxyproline + NAD → Pyrroline hydroxycarboxylic acid + NADH + Hydrogen Iondetails
4-Hydroxyproline + NADP → Pyrroline hydroxycarboxylic acid + NADPH + Hydrogen Iondetails
Enzyme Details
3. Pyrroline-5-carboxylate reductase 2
General function:
Involved in oxidoreductase activity
Specific function:
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH.
Gene Name:
PYCR2
Uniprot ID:
Q96C36
Molecular weight:
25867.975
Reactions
4-Hydroxyproline + NAD → Pyrroline hydroxycarboxylic acid + NADH + Hydrogen Iondetails
4-Hydroxyproline + NADP → Pyrroline hydroxycarboxylic acid + NADPH + Hydrogen Iondetails
Enzyme Details
4. Pyrroline-5-carboxylate reductase 3
General function:
Involved in oxidoreductase activity
Specific function:
Not Available
Gene Name:
PYCRL
Uniprot ID:
Q53H96
Molecular weight:
29892.415
Reactions
4-Hydroxyproline + NAD → Pyrroline hydroxycarboxylic acid + NADH + Hydrogen Iondetails
4-Hydroxyproline + NADP → Pyrroline hydroxycarboxylic acid + NADPH + Hydrogen Iondetails