Hmdb loader

Showing metabocard for 2-Hydroxyvaleric acid (HMDB0001863)

Jump To Section:
IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesenzymes (2) Show 2 proteinsXML
enzymes (2) Show 2 proteins
Record Information
Version5.0
StatusDetected and Quantified
Creation Date2006-02-23 10:30:31 UTC
Update Date2023-02-21 17:15:51 UTC
HMDB IDHMDB0001863
Secondary Accession Numbers
  • HMDB01863
Metabolite Identification
Common Name2-Hydroxyvaleric acid
Description2-Hydroxyvaleric acid is an organic acid present in human biofluids. Its presence in urine has been associated with lactic acidosis, which occurs in Succinic Acidemia (OMIM 600335 ), a syndrome of organic acidemia associated with congenital lactic acidosis and decreased NADH-cytochrome c reductase activity. 2-Hydroxyvaleric acid presence associated with lactic acidosis has also been found in Propionyl-CoA carboxylase deficiency (OMIM 253260 ), or Multiple carboxylase deficiency (MCD), an autosomal recessive metabolic disorder characterized primarily by cutaneous and neurologic abnormalities. (PMID: 9389332 , 1790187 , 3378323 , 3383430 , 7313494 ).
Structure
Data?1676999751
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0001863 (2-Hydroxyvaleric acid)


  Mrv0541 02231219142D          

  8  7  0  0  0  0            999 V2000
   17.8875   -4.9871    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.3163   -4.1622    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.6020   -2.9247    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.1730   -3.7497    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4585   -4.1622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8875   -4.1622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7441   -3.7497    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6020   -3.7497    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  6  1  0  0  0  0
  2  8  1  0  0  0  0
  3  8  2  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  5  7  1  0  0  0  0
  6  8  1  0  0  0  0
M  END
Download

3D MOL for HMDB0001863 (2-Hydroxyvaleric acid)

HMDB0001863
     RDKit          3D
2-Hydroxyvaleric acid
 18 17  0  0  0  0  0  0  0  0999 V2000
   -2.5179   -0.6479    0.3145 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1224   -0.1171    0.6778 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3631    0.2177   -0.5540 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0104    0.7495   -0.3262 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6606    1.0429   -1.5322 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9149   -0.1268    0.4223 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5791   -0.5304    1.5646 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1471   -0.5584   -0.0430 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0035    0.0087   -0.4311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0928   -0.6244    1.2669 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3904   -1.6708   -0.0882 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3144    0.7603    1.3334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6947   -0.8996    1.3120 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3795   -0.6681   -1.2275 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9353    1.0097   -1.0945 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9039    1.7212    0.2238 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2762    1.7838   -1.3666 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3221   -1.4503   -0.4520 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  2  0
  6  8  1  0
  1  9  1  0
  1 10  1  0
  1 11  1  0
  2 12  1  0
  2 13  1  0
  3 14  1  0
  3 15  1  0
  4 16  1  0
  5 17  1  0
  8 18  1  0
M  END
Download

3D SDF for HMDB0001863 (2-Hydroxyvaleric acid)


  Mrv0541 02231219142D          

  8  7  0  0  0  0            999 V2000
   17.8875   -4.9871    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.3163   -4.1622    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.6020   -2.9247    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.1730   -3.7497    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4585   -4.1622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8875   -4.1622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7441   -3.7497    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6020   -3.7497    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  6  1  0  0  0  0
  2  8  1  0  0  0  0
  3  8  2  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  5  7  1  0  0  0  0
  6  8  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0001863

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCC(O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C5H10O3/c1-2-3-4(6)5(7)8/h4,6H,2-3H2,1H3,(H,7,8)

> <INCHI_KEY>
JRHWHSJDIILJAT-UHFFFAOYSA-N

> <FORMULA>
C5H10O3

> <MOLECULAR_WEIGHT>
118.1311

> <EXACT_MASS>
118.062994186

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_AVERAGE_POLARIZABILITY>
11.834773660076316

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-hydroxypentanoic acid

> <ALOGPS_LOGP>
0.26

> <JCHEM_LOGP>
0.49526154199999994

> <ALOGPS_LOGS>
0.24

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.284641269964371

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.1421099451224626

> <JCHEM_PKA_STRONGEST_BASIC>
-3.7973131043245454

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
27.9648

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.04e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
pentanoic acid, 2-hydroxy-

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0001863 (2-Hydroxyvaleric acid)

HMDB0001863
     RDKit          3D
2-Hydroxyvaleric acid
 18 17  0  0  0  0  0  0  0  0999 V2000
   -2.5179   -0.6479    0.3145 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1224   -0.1171    0.6778 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3631    0.2177   -0.5540 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0104    0.7495   -0.3262 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6606    1.0429   -1.5322 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9149   -0.1268    0.4223 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5791   -0.5304    1.5646 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1471   -0.5584   -0.0430 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0035    0.0087   -0.4311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0928   -0.6244    1.2669 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3904   -1.6708   -0.0882 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3144    0.7603    1.3334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6947   -0.8996    1.3120 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3795   -0.6681   -1.2275 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9353    1.0097   -1.0945 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9039    1.7212    0.2238 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2762    1.7838   -1.3666 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3221   -1.4503   -0.4520 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  2  0
  6  8  1  0
  1  9  1  0
  1 10  1  0
  1 11  1  0
  2 12  1  0
  2 13  1  0
  3 14  1  0
  3 15  1  0
  4 16  1  0
  5 17  1  0
  8 18  1  0
M  END
Download

PDB for HMDB0001863 (2-Hydroxyvaleric acid)

HEADER    PROTEIN                                 23-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-FEB-12         0                                  
HETATM    1  O   UNK     0      33.390  -9.309   0.000  0.00  0.00           O+0
HETATM    2  O   UNK     0      36.057  -7.770   0.000  0.00  0.00           O+0
HETATM    3  O   UNK     0      34.724  -5.459   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      32.056  -6.999   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      30.723  -7.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      33.390  -7.770   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      29.389  -6.999   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      34.724  -6.999   0.000  0.00  0.00           C+0
CONECT    1    6                                                            
CONECT    2    8                                                            
CONECT    3    8                                                            
CONECT    4    5    6                                                       
CONECT    5    4    7                                                       
CONECT    6    1    4    8                                                  
CONECT    7    5                                                            
CONECT    8    2    3    6                                                  
MASTER        0    0    0    0    0    0    0    0    8    0   14    0
END
Download

3D PDB for HMDB0001863 (2-Hydroxyvaleric acid)

COMPND    HMDB0001863
HETATM    1  C1  UNL     1      -2.518  -0.648   0.314  1.00  0.00           C  
HETATM    2  C2  UNL     1      -1.122  -0.117   0.678  1.00  0.00           C  
HETATM    3  C3  UNL     1      -0.363   0.218  -0.554  1.00  0.00           C  
HETATM    4  C4  UNL     1       1.010   0.750  -0.326  1.00  0.00           C  
HETATM    5  O1  UNL     1       1.661   1.043  -1.532  1.00  0.00           O  
HETATM    6  C5  UNL     1       1.915  -0.127   0.422  1.00  0.00           C  
HETATM    7  O2  UNL     1       1.579  -0.530   1.565  1.00  0.00           O  
HETATM    8  O3  UNL     1       3.147  -0.558  -0.043  1.00  0.00           O  
HETATM    9  H1  UNL     1      -3.004   0.009  -0.431  1.00  0.00           H  
HETATM   10  H2  UNL     1      -3.093  -0.624   1.267  1.00  0.00           H  
HETATM   11  H3  UNL     1      -2.390  -1.671  -0.088  1.00  0.00           H  
HETATM   12  H4  UNL     1      -1.314   0.760   1.333  1.00  0.00           H  
HETATM   13  H5  UNL     1      -0.695  -0.900   1.312  1.00  0.00           H  
HETATM   14  H6  UNL     1      -0.380  -0.668  -1.227  1.00  0.00           H  
HETATM   15  H7  UNL     1      -0.935   1.010  -1.094  1.00  0.00           H  
HETATM   16  H8  UNL     1       0.904   1.721   0.224  1.00  0.00           H  
HETATM   17  H9  UNL     1       2.276   1.784  -1.367  1.00  0.00           H  
HETATM   18  H10 UNL     1       3.322  -1.450  -0.452  1.00  0.00           H  
CONECT    1    2    9   10   11
CONECT    2    3   12   13
CONECT    3    4   14   15
CONECT    4    5    6   16
CONECT    5   17
CONECT    6    7    7    8
CONECT    8   18
END
Download

SMILES for HMDB0001863 (2-Hydroxyvaleric acid)

CCCC(O)C(O)=O
Download

INCHI for HMDB0001863 (2-Hydroxyvaleric acid)

InChI=1S/C5H10O3/c1-2-3-4(6)5(7)8/h4,6H,2-3H2,1H3,(H,7,8)
Download
View in JSmolView Stereo Labels
Synonyms
ValueSource
alpha-Hydroxy-N-valeric acidChEBI
alpha-Hydroxyvaleric acidChEBI
a-Hydroxy-N-valerateGenerator
a-Hydroxy-N-valeric acidGenerator
alpha-Hydroxy-N-valerateGenerator
Α-hydroxy-N-valerateGenerator
Α-hydroxy-N-valeric acidGenerator
a-HydroxyvalerateGenerator
a-Hydroxyvaleric acidGenerator
alpha-HydroxyvalerateGenerator
Α-hydroxyvalerateGenerator
Α-hydroxyvaleric acidGenerator
2-HydroxyvalerateGenerator
(+-)-2-HydroxypentanoateHMDB
(+-)-2-Hydroxypentanoic acidHMDB
(S)-2-Hydroxyvaleric acidHMDB
2-Hydroxy-pentanoateHMDB
2-Hydroxy-pentanoic acidHMDB
2-HydroxypentanoateHMDB
2-Hydroxypentanoic acidHMDB
DL-2-Hydroxy valeric acidHMDB
DL-2-Hydroxy valerateHMDB
2-Hydroxyvaleric acidChEBI
Chemical FormulaC5H10O3
Average Molecular Weight118.1311
Monoisotopic Molecular Weight118.062994186
IUPAC Name2-hydroxypentanoic acid
Traditional Namepentanoic acid, 2-hydroxy-
CAS Registry Number617-31-2
SMILES
CCCC(O)C(O)=O
InChI Identifier
InChI=1S/C5H10O3/c1-2-3-4(6)5(7)8/h4,6H,2-3H2,1H3,(H,7,8)
InChI KeyJRHWHSJDIILJAT-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hydroxy fatty acids. These are fatty acids in which the chain bears a hydroxyl group.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acids and conjugates
Direct ParentHydroxy fatty acids
Alternative Parents
Substituents
  • Branched fatty acid
  • Methyl-branched fatty acid
  • Hydroxy fatty acid
  • Alpha-hydroxy acid
  • Hydroxy acid
  • Monosaccharide
  • Secondary alcohol
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Alcohol
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Organic oxygen compound
  • Organooxygen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Biological locationRoute of exposureSource
Process
Naturally occurring process
Role
Biological role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point34 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogP0.45SANGSTER (1993)
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility204 g/LALOGPS
logP0.26ALOGPS
logP0.5ChemAxon
logS0.24ALOGPS
pKa (Strongest Acidic)4.14ChemAxon
pKa (Strongest Basic)-3.8ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area57.53 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity27.96 m³·mol⁻¹ChemAxon
Polarizability11.83 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+125.38431661259
DarkChem[M-H]-119.26631661259
AllCCS[M+H]+129.84532859911
AllCCS[M-H]-125.43132859911
DeepCCS[M+H]+132.91730932474
DeepCCS[M-H]-130.12630932474
DeepCCS[M-2H]-166.54530932474
DeepCCS[M+Na]+141.2230932474
AllCCS[M+H]+129.832859911
AllCCS[M+H-H2O]+125.632859911
AllCCS[M+NH4]+133.832859911
AllCCS[M+Na]+135.032859911
AllCCS[M-H]-125.432859911
AllCCS[M+Na-2H]-128.632859911
AllCCS[M+HCOO]-132.232859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.1.84 minutes32390414
Predicted by Siyang on May 30, 202210.4481 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.37 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid102.3 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1220.5 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid359.7 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid94.8 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid221.1 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid90.8 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid357.2 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid373.7 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)117.6 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid750.3 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid297.8 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1025.6 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid238.2 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid289.9 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate497.9 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA266.0 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water187.6 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
2-Hydroxyvaleric acidCCCC(O)C(O)=O1952.5Standard polar33892256
2-Hydroxyvaleric acidCCCC(O)C(O)=O983.5Standard non polar33892256
2-Hydroxyvaleric acidCCCC(O)C(O)=O1055.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
2-Hydroxyvaleric acid,1TMS,isomer #1CCCC(O[Si](C)(C)C)C(=O)O1153.6Semi standard non polar33892256
2-Hydroxyvaleric acid,1TMS,isomer #2CCCC(O)C(=O)O[Si](C)(C)C1075.3Semi standard non polar33892256
2-Hydroxyvaleric acid,2TMS,isomer #1CCCC(O[Si](C)(C)C)C(=O)O[Si](C)(C)C1202.6Semi standard non polar33892256
2-Hydroxyvaleric acid,1TBDMS,isomer #1CCCC(O[Si](C)(C)C(C)(C)C)C(=O)O1370.4Semi standard non polar33892256
2-Hydroxyvaleric acid,1TBDMS,isomer #2CCCC(O)C(=O)O[Si](C)(C)C(C)(C)C1290.7Semi standard non polar33892256
2-Hydroxyvaleric acid,2TBDMS,isomer #1CCCC(O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C1619.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - 2-Hydroxyvaleric acid GC-EI-TOF (Non-derivatized)splash10-000t-1900000000-d70300be52196291976d2017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - 2-Hydroxyvaleric acid GC-EI-TOF (Non-derivatized)splash10-000t-1900000000-d70300be52196291976d2018-05-18HMDB team, MONA, MassBankView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2-Hydroxyvaleric acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-00bc-9000000000-8ef25031872550bc4b5a2016-09-22Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2-Hydroxyvaleric acid GC-MS (2 TMS) - 70eV, Positivesplash10-00g1-9520000000-c9d4fd57ae20696954b72017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2-Hydroxyvaleric acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - 2-Hydroxyvaleric acid LC-ESI-QTOF , negative-QTOFsplash10-01b9-5900000000-01385a49616d72e0af482017-09-14HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Hydroxyvaleric acid 10V, Positive-QTOFsplash10-0gb9-5900000000-3d71ffe5b1c985dfc9cc2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Hydroxyvaleric acid 20V, Positive-QTOFsplash10-0fdo-9200000000-659ff4c4697dba5925842016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Hydroxyvaleric acid 40V, Positive-QTOFsplash10-0006-9000000000-96838793607ef6f63efe2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Hydroxyvaleric acid 10V, Negative-QTOFsplash10-014i-5900000000-a4fc27ef3911175a04012016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Hydroxyvaleric acid 20V, Negative-QTOFsplash10-00di-9200000000-59dd4da8ca2bf68da3f12016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Hydroxyvaleric acid 40V, Negative-QTOFsplash10-05fu-9000000000-bc0895fffaa6399f624b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Hydroxyvaleric acid 10V, Negative-QTOFsplash10-014j-4900000000-2614517a07efec2cf55f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Hydroxyvaleric acid 20V, Negative-QTOFsplash10-01ba-9300000000-a44dada0b4de6fdaa3d52021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Hydroxyvaleric acid 40V, Negative-QTOFsplash10-0006-9000000000-e3ae3abd89704d8b46602021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Hydroxyvaleric acid 10V, Positive-QTOFsplash10-0a4i-9100000000-97bcc465197c4cce0de92021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Hydroxyvaleric acid 20V, Positive-QTOFsplash10-0a4i-9000000000-2cfc42755749c6d13ccc2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Hydroxyvaleric acid 40V, Positive-QTOFsplash10-0006-9000000000-5b66cfecc9e0301583d42021-09-23Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-03FELIX labView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
  • Feces
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot Available
Normal
      Not Available
 details
FecesDetected but not QuantifiedNot QuantifiedInfant (0-1 year old)Both
Normal		 details
UrineDetected and Quantified0.1 +/- 0.1 umol/mmol creatinineAdult (>18 years old)BothNormal details
UrineDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Both
Normal		 details
UrineDetected and Quantified0-4 umol/mmol creatinineNewborn (0-30 days old)Both
Normal		 details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB022717
KNApSAcK IDNot Available
Chemspider ID88482
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound98009
PDB IDNot Available
ChEBI ID60647
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceD'yakonov, I. A.; Vinogradova, N. B. Reactions of aliphatic diazo compounds with unsaturated compounds. VIII. Reaction of diazoacetic ester with allyl bromide. Zhurnal Obshchei Khimii (1951), 21 851-60.
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Verhaeghe BJ, Lefevere MF, De Leenheer AP: Solid-phase extraction with strong anion-exchange columns for selective isolation and concentration of urinary organic acids. Clin Chem. 1988 Jun;34(6):1077-83. [PubMed:3378323 ]
  2. Bergstrom T, Greter J, Levin AH, Steen G, Tryding N, Wass U: Propionyl-CoA carboxylase deficiency: case report, effect of low-protein diet and identification of 3-oxo-2-methylvaleric acid 3-hydroxy-2-methylvaleric acid, and maleic acid in urine. Scand J Clin Lab Invest. 1981 Apr;41(2):117-26. [PubMed:7313494 ]
  3. Jellum E, Harboe M, Bjune G, Wold S: Interpreting complicated chromatographic patterns. J Pharm Biomed Anal. 1991;9(8):663-9. [PubMed:1790187 ]
  4. Kim KR, Kim JH, Jeong DH, Paek DJ, Liebich HM: Gas chromatographic profiling analysis of urinary organic acids from nonsmokers and smokers. J Chromatogr B Biomed Sci Appl. 1997 Nov 7;701(1):1-8. [PubMed:9389332 ]
  5. Asano K, Miyamoto I, Matsushita T, Murakami Y, Minoura S, Wagatsuma T, Oshima M: Succinic acidemia: a new syndrome of organic acidemia associated with congenital lactic acidosis and decreased NADH-cytochrome c reductase activity. Clin Chim Acta. 1988 Apr 29;173(3):305-12. [PubMed:3383430 ]

Enzymes

Enzyme Details
1. Sulfotransferase family cytosolic 2B member 1
General function:
Involved in sulfotransferase activity
Specific function:
Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the sulfate conjugation of many hormones, neurotransmitters, drugs and xenobiotic compounds. Sulfonation increases the water solubility of most compounds, and therefore their renal excretion, but it can also result in bioactivation to form active metabolites. Sulfates hydroxysteroids like DHEA. Isoform 1 preferentially sulfonates cholesterol, and isoform 2 avidly sulfonates pregnenolone but not cholesterol.
Gene Name:
SULT2B1
Uniprot ID:
O00204
Molecular weight:
39598.595
Reactions
2-Hydroxyvaleric acid → 2-(sulfooxy)pentanoic aciddetails
Enzyme Details
2. UDP-glucuronosyltransferase 1-1
General function:
Involved in transferase activity, transferring hexosyl groups
Specific function:
UDPGT is of major importance in the conjugation and subsequent elimination of potentially toxic xenobiotics and endogenous compounds. This isoform glucuronidates bilirubin IX-alpha to form both the IX-alpha-C8 and IX-alpha-C12 monoconjugates and diconjugate. Is also able to catalyze the glucuronidation of 17beta-estradiol, 17alpha-ethinylestradiol, 1-hydroxypyrene, 4-methylumbelliferone, 1-naphthol, paranitrophenol, scopoletin, and umbelliferone.
Gene Name:
UGT1A1
Uniprot ID:
P22309
Molecular weight:
59590.91
Reactions
2-Hydroxyvaleric acid → 6-(1-carboxybutoxy)-3,4,5-trihydroxyoxane-2-carboxylic aciddetails
2-Hydroxyvaleric acid → 3,4,5-trihydroxy-6-[(2-hydroxypentanoyl)oxy]oxane-2-carboxylic aciddetails